Works by Rodriguez-Esteban, Raul

Results: 33

Generative AI and digital twins: shaping a paradigm shift from precision to truly personalized medicine.

Published in:

2025

By:

Bordukova, Maria;
Arneth, Alina J.;
Makarov, Nikita;
Brown, Robyn M.;
Schneider-Futschik, Elena K.;
Dharmage, Shyamali C.;
Ekinci, Elif;
Crack, Peter J.;
Hatters, Danny M.;
Stewart, Alastair G.;
Stroud, David;
Sadras, Teresa;
Anderson, Gary P.;
Schmich, Fabian;
Rodriguez-Esteban, Raul;
Menden, Michael P.

Publication type:

Editorial

Cell maps on the human genome.

Published in:

Molecular Cytogenetics (17558166), 2019, v. 12, n. 1, p. N.PAG, doi. 10.1186/s13039-019-0426-4

By:

Cherniak, Christopher;
Rodriguez-Esteban, Raul

Publication type:

Article

Identifying and classifying biomedical perturbations in text.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 3, p. 771, doi. 10.1093/nar/gkn986

By:

Rodriguez-Esteban, Raul;
Roberts, Phoebe M.;
Crawford, Matthew E.

Publication type:

Article

Oreja: A MATLAB environment for the design of psychoacoustic stimuli.

Published in:

Behavior Research Methods, 2006, v. 38, n. 4, p. 574, doi. 10.3758/BF03193887

By:

Pérez, Elvira;
Rodriguez-Esteban, Raul

Publication type:

Article

Patient listening on social media for patient-focused drug development: a synthesis of considerations from patients, industry and regulators.

Published in:

Frontiers in Medicine, 2024, p. 1, doi. 10.3389/fmed.2024.1274688

By:

Cimiano, Philipp;
Collins, Ben;
De Vuono, Maria Carmela;
Escudier, Thierry;
Gottowik, Jürgen;
Hartung, Matthias;
Leddin, Mathias;
Neupane, Bikalpa;
Rodriguez-Esteban, Raul;
Lucia Schmidt, Ana;
Starke-Knäusel, Cornelius;
Voorhaar, Maarten;
Wieckowski, Krzysztof

Publication type:

Article

Understanding the genetics of viral drug resistance by integrating clinical data and mining of the scientific literature.

Published in:

Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-17746-3

By:

Goto, An;
Rodriguez-Esteban, Raul;
Scharf, Sebastian H.;
Morris, Garrett M.

Publication type:

Article

Six senses in the literature. The bleak sensory landscape of biomedical texts.

Published in:

EMBO Reports, 2008, v. 9, n. 3, p. 212, doi. 10.1038/embor.2008.15

By:

Rodriguez-Esteban, Raul;
Rzhetsky, Andrey

Publication type:

Article

Retraction rates are on the rise.

Published in:

EMBO Reports, 2008, v. 9, n. 1, p. 2, doi. 10.1038/sj.embor.7401143

By:

Cokol, Murat;
Ozbay, Fatih;
Rodriguez-Esteban, Raul

Publication type:

Article

Response by Cokol et al.

Published in:

EMBO Reports, 2007, v. 8, n. 9, p. 793, doi. 10.1038/sj.embor.7401054

By:

Cokol, Murat;
Iossifov, Ivan;
Rodriguez-Esteban, Raul;
Rzhetsky, Andrey

Publication type:

Article

How many scientific papers should be retracted?

Published in:

EMBO Reports, 2007, v. 8, n. 5, p. 422, doi. 10.1038/sj.embor.7400970

By:

Cokol, Murat;
Iossifov, Ivan;
Rodriguez-Esteban, Raul;
Rzhetsky, Andrey

Publication type:

Article

Prediction of standard cell types and functional markers from textual descriptions of flow cytometry gating definitions using machine learning.

Published in:

Cytometry. Part B, 2022, v. 102, n. 3, p. 220, doi. 10.1002/cyto.b.22065

By:

Rodriguez‐Esteban, Raul;
Duarte, José;
Teixeira, Priscila C.;
Richard, Fabien;
Koltsova, Svetlana;
So, W. Venus

Publication type:

Article

Imitating Manual Curation of Text-Mined Facts in Biomedicine.

Published in:

PLoS Computational Biology, 2006, v. 2, n. 9, p. e118, doi. 10.1371/journal.pcbi.0020118

By:

Rodriguez-Esteban, Raul;
Iossifov, Ivan;
Rzhetsky, Andrey

Publication type:

Article

Semantic persistence of ambiguous biomedical names in the citation network.

Published in:

Bioinformatics, 2020, v. 36, n. 7, p. 2224, doi. 10.1093/bioinformatics/btz923

By:

Rodriguez-Esteban, Raul

Publication type:

Article

Quantifying the complexity of medical research.

Published in:

Bioinformatics, 2013, v. 29, n. 22, p. 2918, doi. 10.1093/bioinformatics/btt505

By:

Rodriguez-Esteban, Raul;
Loging, William T.

Publication type:

Article

Overview of the 8th Social Media Mining for Health Applications (#SMM4H) shared tasks at the AMIA 2023 Annual Symposium.

Published in:

Journal of the American Medical Informatics Association, 2024, v. 31, n. 4, p. 991, doi. 10.1093/jamia/ocae010

By:

Klein, Ari Z;
Banda, Juan M;
Guo, Yuting;
Schmidt, Ana Lucia;
Xu, Dongfang;
Amaro, Ivan Flores;
Rodriguez-Esteban, Raul;
Sarker, Abeed;
Gonzalez-Hernandez, Graciela

Publication type:

Article

A new approach and gold standard toward author disambiguation in MEDLINE.

Published in:

2019

By:

Vishnyakova, Dina;
Rodriguez-Esteban, Raul;
Rinaldi, Fabio

Publication type:

journal article

Revisiting the decay of scientific email addresses.

Published in:

Journal of the Association for Information Science & Technology, 2022, v. 73, n. 1, p. 136, doi. 10.1002/asi.24545

By:

Rodriguez‐Esteban, Raul;
Vishnyakova, Dina;
Rinaldi, Fabio

Publication type:

Article

PretoxTM: a text mining system for extracting treatment-related findings from preclinical toxicology reports.

Published in:

Journal of Cheminformatics, 2025, v. 17, n. 1, p. 1, doi. 10.1186/s13321-024-00925-x

By:

Corvi, Javier;
Díaz-Roussel, Nicolás;
Fernández, José M.;
Ronzano, Francesco;
Centeno, Emilio;
Accuosto, Pablo;
Ibrahim, Celine;
Asakura, Shoji;
Bringezu, Frank;
Fröhlicher, Mirjam;
Kreuchwig, Annika;
Nogami, Yoko;
Rih, Jeong;
Rodriguez-Esteban, Raul;
Sajot, Nicolas;
Wichard, Joerg;
Wu, Heng-Yi Michael;
Drew, Philip;
Steger-Hartmann, Thomas;
Valencia, Alfonso

Publication type:

Article

OntoGene web services for biomedical text mining.

Published in:

BMC Bioinformatics, 2014, v. 15, n. Suppl 14, p. 1, doi. 10.1186/1471-2105-15-S14-S6

By:

Rinaldi, Fabio;
Clematide, Simon;
Marques, Hernani;
Ellendorff, Tilia;
Romacker, Martin;
Rodriguez-Esteban, Raul

Publication type:

Article

A Drug-Centric View of Drug Development: How Drugs Spread from Disease to Disease.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 4, p. 1, doi. 10.1371/journal.pcbi.1004852

By:

Rodriguez-Esteban, Raul

Publication type:

Article

Biomedical Text Mining and Its Applications.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 12, p. 1, doi. 10.1371/journal.pcbi.1000597

By:

Rodriguez-Esteban, Raul

Publication type:

Article

Looking at Cerebellar Malformations through Text-Mined Interactomes of Mice and Humans.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 11, p. 1, doi. 10.1371/journal.pcbi.1000559

By:

Iossifov, Ivan;
Rodriguez-Esteban, Raul;
Mayzus, Ilya;
Millen, Kathleen J.;
Rzhetsky, Andrey

Publication type:

Article

The speed of information propagation in the scientific network distorts biomedical research.

Published in:

PeerJ, 2022, p. 1, doi. 10.7717/peerj.12764

By:

Rodriguez-Esteban, Raul

Publication type:

Article

Generative artificial intelligence empowers digital twins in drug discovery and clinical trials.

Published in:

Expert Opinion on Drug Discovery, 2024, v. 19, n. 1, p. 33, doi. 10.1080/17460441.2023.2273839

By:

Bordukova, Maria;
Makarov, Nikita;
Rodriguez-Esteban, Raul;
Schmich, Fabian;
Menden, Michael P.

Publication type:

Article

Automatic Extraction of Medication Mentions from Tweets—Overview of the BioCreative VII Shared Task 3 Competition.

Published in:

Database: The Journal of Biological Databases & Curation, 2023, v. 2023, p. 1, doi. 10.1093/database/baac108

By:

Weissenbacher, Davy;
O'Connor, Karen;
Rawal, Siddharth;
Zhang, Yu;
Tsai, Richard Tzong-Han;
Miller, Timothy;
Xu, Dongfang;
Anderson, Carol;
Liu, Bo;
Han, Qing;
Zhang, Jinfeng;
Kulev, Igor;
Köprü, Berkay;
Rodriguez-Esteban, Raul;
Ozkirimli, Elif;
Ayach, Ammer;
Roller, Roland;
Piccolo, Stephen;
Han, Peijin;
Vydiswaran, V G Vinod

Publication type:

Article

Challenges and opportunities for mining adverse drug reactions: perspectives from pharma, regulatory agencies, healthcare providers and consumers.

Published in:

Database: The Journal of Biological Databases & Curation, 2022, v. 2022, p. 1, doi. 10.1093/database/baac071

By:

Gonzalez-Hernandez, Graciela;
Krallinger, Martin;
Muñoz, Monica;
Rodriguez-Esteban, Raul;
Uzuner, Özlem;
Hirschman, Lynette

Publication type:

Article

New reasons for biologists to write with a formal language.

Published in:

Database: The Journal of Biological Databases & Curation, 2022, v. 2022, p. 1, doi. 10.1093/database/baac039

By:

Rodriguez-Esteban, Raul

Publication type:

Article

Biocuration with insufficient resources and fixed timelines.

Published in:

Database: The Journal of Biological Databases & Curation, 2015, v. 2015, p. 1, doi. 10.1093/database/bav116

By:

Rodriguez-Esteban, Raul

Publication type:

Article

Information processing limits on generating neuroanatomy: global optimization of rat olfactory cortex and amygdala.

Published in:

Journal of Biological Physics, 2010, v. 36, n. 1, p. 45, doi. 10.1007/s10867-009-9162-z

By:

Cherniak, Christopher;
Rodriguez-Esteban, Raul

Publication type:

Article

A Patient-Centered Conceptual Model of Symptoms and Their Impact in Early Parkinson's Disease: A Qualitative Study.

Published in:

Journal of Parkinson's Disease, 2022, v. 12, n. 1, p. 137, doi. 10.3233/JPD-202457

By:

Staunton, Hannah;
Kelly, Kim;
Newton, Louise;
Leddin, Mathias;
Rodriguez-Esteban, Raul;
Chaudhuri, K. Ray;
Weintraub, Daniel;
Postuma, Ronald B.;
Martinez-Martin, Pablo

Publication type:

Article

Body maps on the human genome.

Published in:

Molecular Cytogenetics (17558166), 2013, v. 6, n. 1, p. 1, doi. 10.1186/1755-8166-6-61

By:

Cherniak, Christopher;
Rodriguez-Esteban, Raul

Publication type:

Article

Differential gene expression in disease: a comparison between high-throughput studies and the literature.

Published in:

BMC Medical Genomics, 2017, v. 10, p. 1, doi. 10.1186/s12920-017-0293-y

By:

Rodriguez-Esteban, Raul;
Xiaoyu Jiang

Publication type:

Article

Biomedical articles share annotations with their citation neighbors.

Published in:

BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04044-4

By:

Rodriguez-Esteban, Raul

Publication type:

Article