Found: 12

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  • Pathway Commons 2019 Update: integration, analysis and exploration of pathway data.

    Published in:
    Nucleic Acids Research, 2020, v. 48, n. D1, p. D489, doi. 10.1093/nar/gkz946
    By:
    • Rodchenkov, Igor;
    • Babur, Ozgun;
    • Luna, Augustin;
    • Aksoy, Bulent Arman;
    • Wong, Jeffrey V;
    • Fong, Dylan;
    • Franz, Max;
    • Siper, Metin Can;
    • Cheung, Manfred;
    • Wrana, Michael;
    • Mistry, Harsh;
    • Mosier, Logan;
    • Dlin, Jonah;
    • Wen, Qizhi;
    • O'Callaghan, Caitlin;
    • Li, Wanxin;
    • Elder, Geoffrey;
    • Smith, Peter T;
    • Dallago, Christian;
    • Cerami, Ethan
    Publication type:
    Article

  • Using Biological Pathway Data with Paxtools.

    Published in:
    PLoS Computational Biology, 2013, v. 9, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003194
    By:
    • Demir, Emek;
    • Babur, Özgün;
    • Rodchenkov, Igor;
    • Aksoy, Bülent Arman;
    • Fukuda, Ken I.;
    • Gross, Benjamin;
    • Sümer, Onur Selçuk;
    • Bader, Gary D.;
    • Sander, Chris
    Publication type:
    Article

  • Pattern search in BioPAX models.

    Published in:
    Bioinformatics, 2014, v. 30, n. 1, p. 139, doi. 10.1093/bioinformatics/btt539
    By:
    • Babur, Özgün;
    • Aksoy, Bülent Arman;
    • Rodchenkov, Igor;
    • Sümer, Selçuk Onur;
    • Sander, Chris;
    • Demir, Emek
    Publication type:
    Article

  • The BioPAX Validator.

    Published in:
    Bioinformatics, 2013, v. 29, n. 20, p. 2659, doi. 10.1093/bioinformatics/btt452
    By:
    • Rodchenkov, Igor;
    • Demir, Emek;
    • Sander, Chris;
    • Bader, Gary D.
    Publication type:
    Article

  • Beyond the best match: machine learning annotation of protein sequences by integration of different sources of information.

    Published in:
    Bioinformatics, 2008, v. 24, n. 5, p. 621, doi. 10.1093/bioinformatics/btm633
    By:
    • Igor V. Tetko;
    • Igor V. Rodchenkov;
    • Mathias C. Walter;
    • Thomas Rattei;
    • Hans-Werner Mewes
    Publication type:
    Article

  • Author- sourced capture of pathway knowledge in computable form using Biofactoid.

    Published in:
    eLife, 2021, p. 1, doi. 10.7554/eLife.68292
    By:
    • WONG, JEFFREY V.;
    • FRANZ, MAX;
    • SIPER, METIN CAN;
    • FONG, DYLAN;
    • DURUPINAR, FUNDA;
    • DALLAGO, CHRISTIAN;
    • LUNA, AUGUSTIN;
    • GIORGI, JOHN;
    • RODCHENKOV, IGOR;
    • BABUR, ÖZGÜN;
    • BACHMAN, JOHN A.;
    • GYORI, BENJAMIN M.;
    • DEMIR, EMEK;
    • BADER, GARY D.;
    • SANDER, CHRIS
    Publication type:
    Article

  • PSIC: profile extraction from sequence alignments with position-specific counts of independent observations.

    Published in:
    Protein Engineering, 1999, v. 12, n. 5, p. 387, doi. 10.1093/protein/12.5.387
    By:
    • Sunyaev, Shamil R.;
    • Eisenhaber, Frank;
    • Rodchenkov, Igor V.;
    • Eisenhaber, Birgit;
    • Tumanyan, Vladimir G.;
    • Kuznetsov, Eugene N.
    Publication type:
    Article

  • Pathway Commons, a web resource for biological pathway data.

    Published in:
    Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D685, doi. 10.1093/nar/gkq1039
    By:
    • Cerami, Ethan G.;
    • Gross, Benjamin E.;
    • Demir, Emek;
    • Rodchenkov, Igor;
    • Babur, Özgün;
    • Anwar, Nadia;
    • Schultz, Nikolaus;
    • Bader, Gary D.;
    • Sander, Chris
    Publication type:
    Article

  • CCancer: a bird’s eye view on gene lists reported in cancer-related studies.

    Published in:
    Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W118, doi. 10.1093/nar/gkq515
    By:
    • Dietmann, Sabine;
    • Lee, Wanseon;
    • Wong, Philip;
    • Rodchenkov, Igor;
    • Antonov, Alexey V.
    Publication type:
    Article

  • Corrigendum: The BioPAX community standard for pathway data sharing.

    Published in:
    2012
    By:
    • Demir, Emek;
    • Cary, Michael P;
    • Paley, Suzanne;
    • Fukuda, Ken;
    • Lemer, Christian;
    • Vastrik, Imre;
    • Wu, Guanming;
    • D'Eustachio, Peter;
    • Schaefer, Carl;
    • Luciano, Joanne;
    • Schacherer, Frank;
    • Martinez-Flores, Irma;
    • Hu, Zhenjun;
    • Jimenez-Jacinto, Veronica;
    • Joshi-Tope, Geeta;
    • Kandasamy, Kumaran;
    • Lopez-Fuentes, Alejandra C;
    • Mi, Huaiyu;
    • Pichler, Elgar;
    • Rodchenkov, Igor
    Publication type:
    Erratum

  • The BioPAX community standard for pathway data sharing.

    Published in:
    2010
    By:
    • Demir, Emek;
    • Cary, Michael P;
    • Paley, Suzanne;
    • Fukuda, Ken;
    • Lemer, Christian;
    • Vastrik, Imre;
    • Wu, Guanming;
    • D'Eustachio, Peter;
    • Schaefer, Carl;
    • Luciano, Joanne;
    • Schacherer, Frank;
    • Martinez-Flores, Irma;
    • Hu, Zhenjun;
    • Jimenez-Jacinto, Veronica;
    • Joshi-Tope, Geeta;
    • Kandasamy, Kumaran;
    • Lopez-Fuentes, Alejandra C;
    • Mi, Huaiyu;
    • Pichler, Elgar;
    • Rodchenkov, Igor
    Publication type:
    Correction notice

  • The BioPAX community standard for pathway data sharing.

    Published in:
    Nature Biotechnology, 2010, v. 28, n. 9, p. 935, doi. 10.1038/nbt.1666
    By:
    • Demir, Emek;
    • Cary, Michael P.;
    • Paley, Suzanne;
    • Fukuda, Ken;
    • Lemer, Christian;
    • Vastrik, Imre;
    • Wu, Guanming;
    • D'Eustachio, Peter;
    • Schaefer, Carl;
    • Luciano, Joanne;
    • Schacherer, Frank;
    • Martinez-Flores, Irma;
    • Hu, Zhenjun;
    • Jimenez-Jacinto, Veronica;
    • Joshi-Tope, Geeta;
    • Kandasamy, Kumaran;
    • Lopez-Fuentes, Alejandra C.;
    • Mi, Huaiyu;
    • Pichler, Elgar;
    • Rodchenkov, Igor
    Publication type:
    Article