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Belt and braces: Two escape ways to maintain the cassette reservoir of large chromosomal integrons.
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- PLoS Genetics, 2024, v. 20, n. 4, p. 1, doi. 10.1371/journal.pgen.1011231
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- Article
Phage-plasmids promote recombination and emergence of phages and plasmids.
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- Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-45757-3
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- Article
Evo‐Scope: Fully automated assessment of correlated evolution on phylogenetic trees.
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- Methods in Ecology & Evolution, 2024, v. 15, n. 2, p. 282, doi. 10.1111/2041-210X.14190
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- Article
Phage-inducible chromosomal minimalist islands (PICMIs), a novel family of small marine satellites of virulent phages.
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- Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-44965-1
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- Article
Phage-inducible chromosomal minimalist islands (PICMIs), a novel family of small marine satellites of virulent phages.
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- Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-44965-1
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- Article
Chance Favors the Prepared Genomes: Horizontal Transfer Shapes the Emergence of Antibiotic Resistance Mutations in Core Genes.
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- Molecular Biology & Evolution, 2023, v. 40, n. 10, p. 1, doi. 10.1093/molbev/msad217
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- Article
Latent evolution of biofilm formation depends on life-history and genetic background.
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- NPJ Biofilms & Microbiomes, 2023, v. 9, n. 1, p. 1, doi. 10.1038/s41522-023-00422-3
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- Article
Restriction-modification systems have shaped the evolution and distribution of plasmids across bacteria.
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- Nucleic Acids Research, 2023, v. 51, n. 13, p. 6806, doi. 10.1093/nar/gkad452
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- Article
Origins of transfer establish networks of functional dependencies for plasmid transfer by conjugation.
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- Nucleic Acids Research, 2023, v. 51, n. 7, p. 3001, doi. 10.1093/nar/gkac1079
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- Article
Identification and characterization of thousands of bacteriophage satellites across bacteria.
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- Nucleic Acids Research, 2023, v. 51, n. 6, p. 2759, doi. 10.1093/nar/gkad123
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- Article
Competition between lysogenic and sensitive bacteria is determined by the fitness costs of the different emerging phage-resistance strategies.
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- eLife, 2023, p. 1, doi. 10.7554/eLife.83479
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- Article
Adaptation to novel spatially-structured environments is driven by the capsule and alters virulence-associated traits.
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- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-32504-9
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- Article
IntegronFinder 2.0: Identification and Analysis of Integrons across Bacteria, with a Focus on Antibiotic Resistance in Klebsiella.
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- Microorganisms, 2022, v. 10, n. 4, p. N.PAG, doi. 10.3390/microorganisms10040700
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- Article
Microbial defenses against mobile genetic elements and viruses: Who defends whom from what?
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- PLoS Biology, 2022, v. 20, n. 1, p. 1, doi. 10.1371/journal.pbio.3001514
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- Article
Correction: PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph.
- Published in:
- 2021
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- Correction Notice
Evolution of ColE1-like plasmids across γ-Proteobacteria: From bacteriocin production to antimicrobial resistance.
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- PLoS Genetics, 2021, v. 17, n. 11, p. 1, doi. 10.1371/journal.pgen.1009919
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- Article
Human commensal gut Proteobacteria withstand type VI secretion attacks through immunity protein-independent mechanisms.
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- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-26041-0
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- Article
Interplay between the cell envelope and mobile genetic elements shapes gene flow in populations of the nosocomial pathogen Klebsiella pneumoniae.
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- PLoS Biology, 2021, v. 19, n. 7, p. 1, doi. 10.1371/journal.pbio.3001276
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- Article
Causes and Consequences of Bacteriophage Diversification via Genetic Exchanges across Lifestyles and Bacterial Taxa.
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- Molecular Biology & Evolution, 2021, v. 38, n. 6, p. 2497, doi. 10.1093/molbev/msab044
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- Article
Erratum: Causes and Consequences of Bacteriophage Diversification via Genetic Exchanges across Lifestyles and Bacterial Taxa.
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- 2021
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- Correction Notice
Bacteria have numerous distinctive groups of phage–plasmids with conserved phage and variable plasmid gene repertoires.
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- Nucleic Acids Research, 2021, v. 49, n. 5, p. 2655, doi. 10.1093/nar/gkab064
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- Article
Pathways for horizontal gene transfer in bacteria revealed by a global map of their plasmids.
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- Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-17278-2
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- Article
A synthesis of bacterial and archaeal phenotypic trait data.
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- Scientific Data, 2020, v. 7, n. 1, p. 1, doi. 10.1038/s41597-020-0497-4
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- Article
Macromolecular crowding links ribosomal protein gene dosage to growth rate in Vibrio cholerae.
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- BMC Biology, 2020, v. 18, n. 1, p. 1, doi. 10.1186/s12915-020-00777-5
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- Article
PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph.
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- PLoS Computational Biology, 2020, v. 16, n. 3, p. 1, doi. 10.1371/journal.pcbi.1007732
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- Article
Author Correction: The chromosomal organization of horizontal gene transfer in bacteria.
- Published in:
- 2020
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- Correction Notice
Community diversity and habitat structure shape the repertoire of extracellular proteins in bacteria.
- Published in:
- Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-14572-x
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- Article
Atypical organizations and epistatic interactions of CRISPRs and cas clusters in genomes and their mobile genetic elements.
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- Nucleic Acids Research, 2020, v. 48, n. 2, p. 748, doi. 10.1093/nar/gkz1091
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- Article
Diversification of the type IV filament superfamily into machines for adhesion, protein secretion, DNA uptake, and motility.
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- PLoS Biology, 2019, v. 17, n. 7, p. 1, doi. 10.1371/journal.pbio.3000390
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- Article
Bacteriophages benefit from generalized transduction.
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- PLoS Pathogens, 2019, v. 15, n. 7, p. 1, doi. 10.1371/journal.ppat.1007888
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- Article
Environmental structure drives resistance to phages and antibiotics during phage therapy and to invading lysogens during colonisation.
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- Scientific Reports, 2019, v. 9, n. 1, p. 1, doi. 10.1038/s41598-019-39773-3
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- Article
Ultrafast search of all deposited bacterial and viral genomic data.
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- Nature Biotechnology, 2019, v. 37, n. 2, p. 152, doi. 10.1038/s41587-018-0010-1
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- Article
Genetic exchanges are more frequent in bacteria encoding capsules.
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- PLoS Genetics, 2018, v. 14, n. 12, p. 1, doi. 10.1371/journal.pgen.1007862
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- Article
Author Correction: Parallels between experimental and natural evolution of legume symbionts.
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- Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-07205-x
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- Article
Host Range and Genetic Plasticity Explain the Coexistence of Integrative and Extrachromosomal Mobile Genetic Elements.
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- Molecular Biology & Evolution, 2018, v. 35, n. 11, p. 2850, doi. 10.1093/molbev/msy182
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- Article
Host Range and Genetic Plasticity Explain the Coexistence of Integrative and Extrachromosomal Mobile Genetic Elements.
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- Molecular Biology & Evolution, 2018, v. 35, n. 9, p. 2230, doi. 10.1093/molbev/msy123
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- Article
CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins.
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- Nucleic Acids Research, 2018, v. 46, n. W1, p. W246, doi. 10.1093/nar/gky425
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- Article
Neutral Theory, Microbial Practice: Challenges in Bacterial Population Genetics.
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- Molecular Biology & Evolution, 2018, v. 35, n. 6, p. 1338, doi. 10.1093/molbev/msy078
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- Article
Bacillus subtilis, the model Gram-positive bacterium: 20 years of annotation refinement.
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- Microbial Biotechnology, 2018, v. 11, n. 1, p. 3, doi. 10.1111/1751-7915.13043
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- Article
Inhibition of NHEJ repair by type II-A CRISPR-Cas systems in bacteria.
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- Nature Communications, 2017, v. 8, n. 1, p. 1, doi. 10.1038/s41467-017-02350-1
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- Article
The chromosomal organization of horizontal gene transfer in bacteria.
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- Nature Communications, 2017, v. 8, n. 1, p. 1, doi. 10.1038/s41467-017-00808-w
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- Article
Recruitment of a Lineage-Specific Virulence Regulatory Pathway Promotes Intracellular Infection by a Plant Pathogen Experimentally Evolved into a Legume Symbiont.
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- Molecular Biology & Evolution, 2017, v. 34, n. 10, p. 2503, doi. 10.1093/molbev/msx165
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- Article
Integrative and conjugative elements and their hosts: composition, distribution and organization.
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- Nucleic Acids Research, 2017, v. 45, n. 15, p. 8943, doi. 10.1093/nar/gkx607
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- Article
A widespread family of polymorphic toxins encoded by temperate phages.
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- BMC Biology, 2017, v. 15, p. 1, doi. 10.1186/s12915-017-0415-1
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- Article
Abundance and co-occurrence of extracellular capsules increases environmental breadth: Implications for the emergence of pathogens.
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- PLoS Pathogens, 2017, v. 13, n. 7, p. 1, doi. 10.1371/journal.ppat.1006525
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- Article
Comparative genomic analysis of Acinetobacter strains isolated from murine colonic crypts.
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- BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-3925-x
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- Article
Metabolic diversity of the emerging pathogenic lineages of Klebsiella pneumoniae.
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- Environmental Microbiology, 2017, v. 19, n. 5, p. 1881, doi. 10.1111/1462-2920.13689
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- Article
Genomic epidemiology and global diversity of the emerging bacterial pathogen Elizabethkingia anophelis.
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- Scientific Reports, 2016, p. 30379, doi. 10.1038/srep30379
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- Article
The Impact of Selection, Gene Conversion, and Biased Sampling on the Assessment of Microbial Demography.
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- Molecular Biology & Evolution, 2016, v. 33, n. 7, p. 1711, doi. 10.1093/molbev/msw048
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- Article
Identification and analysis of integrons and cassette arrays in bacterial genomes.
- Published in:
- Nucleic Acids Research, 2016, v. 44, n. 10, p. 4539, doi. 10.1093/nar/gkw319
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- Article