Found: 10

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  • HAMAP in 2015: updates to the protein family classification and annotation system.

    Published in:
    Nucleic Acids Research, 2015, v. 43, n. D1, p. D1064, doi. 10.1093/nar/gku1002
    By:
    • Pedruzzi, Ivo;
    • Rivoire, Catherine;
    • Auchincloss, Andrea H.;
    • Coudert, Elisabeth;
    • Keller, Guillaume;
    • de Castro, Edouard;
    • Baratin, Delphine;
    • Cuche, Béatrice A.;
    • Bougueleret, Lydie;
    • Poux, Sylvain;
    • Redaschi, Nicole;
    • Xenarios, Ioannis;
    • Bridge, Alan
    Publication type:
    Article
  • The InterPro protein families database: the classification resource after 15 years.

    Published in:
    Nucleic Acids Research, 2015, v. 43, n. D1, p. D213, doi. 10.1093/nar/gku1243
    By:
    • Mitchell, Alex;
    • Chang, Hsin-Yu;
    • Daugherty, Louise;
    • Fraser, Matthew;
    • Hunter, Sarah;
    • Lopez, Rodrigo;
    • McAnulla, Craig;
    • McMenamin, Conor;
    • Nuka, Gift;
    • Pesseat, Sebastien;
    • Sangrador-Vegas, Amaia;
    • Scheremetjew, Maxim;
    • Rato, Claudia;
    • Yong, Siew-Yit;
    • Bateman, Alex;
    • Punta, Marco;
    • Attwood, Teresa K.;
    • Sigrist, Christian J.A.;
    • Redaschi, Nicole;
    • Rivoire, Catherine
    Publication type:
    Article
  • HAMAP in 2013, new developments in the protein family classification and annotation system.

    Published in:
    Nucleic Acids Research, 2013, v. 41, p. D584, doi. 10.1093/nar/gks1157
    By:
    • Pedruzzi, Ivo;
    • Rivoire, Catherine;
    • Auchincloss, Andrea H.;
    • Coudert, Elisabeth;
    • Keller, Guillaume;
    • de Castro, Edouard;
    • Baratin, Delphine;
    • Cuche, Béatrice A.;
    • Bougueleret, Lydie;
    • Poux, Sylvain;
    • Redaschi, Nicole;
    • Xenarios, Ioannis;
    • Bridge, Alan
    Publication type:
    Article
  • HAMAP: a database of completely sequenced microbial proteome sets and manually curated microbial protein families in UniProtKB/Swiss-Prot.

    Published in:
    Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D471, doi. 10.1093/nar/gkn661
    By:
    • Lima, Tania;
    • Auchincloss, Andrea H.;
    • Coudert, Elisabeth;
    • Keller, Guillaume;
    • Michoud, Karine;
    • Rivoire, Catherine;
    • Bulliard, Virginie;
    • de Castro, Edouard;
    • Lachaize, Corinne;
    • Baratin, Delphine;
    • Phan, Isabelle;
    • Bougueleret, Lydie;
    • Bairoch, Amos
    Publication type:
    Article
  • EnzChemRED, a rich enzyme chemistry relation extraction dataset.

    Published in:
    Scientific Data, 2024, v. 11, n. 1, p. 1, doi. 10.1038/s41597-024-03835-7
    By:
    • Lai, Po-Ting;
    • Coudert, Elisabeth;
    • Aimo, Lucila;
    • Axelsen, Kristian;
    • Breuza, Lionel;
    • de Castro, Edouard;
    • Feuermann, Marc;
    • Morgat, Anne;
    • Pourcel, Lucille;
    • Pedruzzi, Ivo;
    • Poux, Sylvain;
    • Redaschi, Nicole;
    • Rivoire, Catherine;
    • Sveshnikova, Anastasia;
    • Wei, Chih-Hsuan;
    • Leaman, Robert;
    • Luo, Ling;
    • Lu, Zhiyong;
    • Bridge, Alan
    Publication type:
    Article
  • SwissBioPics—an interactive library of cell images for the visualization of subcellular location data.

    Published in:
    Database: The Journal of Biological Databases & Curation, 2022, v. 2022, p. 1, doi. 10.1093/database/baac026
    By:
    • Mercier, Philippe Le;
    • Bolleman, Jerven;
    • Castro, Edouard de;
    • Gasteiger, Elisabeth;
    • Bansal, Parit;
    • Auchincloss, Andrea H;
    • Boutet, Emmanuel;
    • Breuza, Lionel;
    • Casals-Casas, Cristina;
    • Estreicher, Anne;
    • Feuermann, Marc;
    • Lieberherr, Damien;
    • Rivoire, Catherine;
    • Pedruzzi, Ivo;
    • Redaschi, Nicole;
    • Bridge, Alan
    Publication type:
    Article
  • Minimizing proteome redundancy in the UniProt Knowledgebase.

    Published in:
    Database: The Journal of Biological Databases & Curation, 2016, v. 2016, p. 1, doi. 10.1093/database/baw139
    By:
    • Bursteinas, Borisas;
    • Britto, Ramona;
    • Bely, Benoit;
    • Auchincloss, Andrea;
    • Rivoire, Catherine;
    • Redaschi, Nicole;
    • O’Donovan, Claire;
    • Martin, Maria Jesus
    Publication type:
    Article
  • InterPro in 2022.

    Published in:
    Nucleic Acids Research, 2023, v. 51, n. D1, p. D418, doi. 10.1093/nar/gkac993
    By:
    • Paysan-Lafosse, Typhaine;
    • Blum, Matthias;
    • Chuguransky, Sara;
    • Grego, Tiago;
    • Pinto, Beatriz Lázaro;
    • Salazar, Gustavo A;
    • Bileschi, Maxwell L;
    • Bork, Peer;
    • Bridge, Alan;
    • Colwell, Lucy;
    • Gough, Julian;
    • Haft, Daniel H;
    • Letunić, Ivica;
    • Marchler-Bauer, Aron;
    • Mi, Huaiyu;
    • Natale, Darren A;
    • Orengo, Christine A;
    • Pandurangan, Arun P;
    • Rivoire, Catherine;
    • Sigrist, Christian J A
    Publication type:
    Article
  • UniRule: a unified rule resource for automatic annotation in the UniProt Knowledgebase.

    Published in:
    Bioinformatics, 2020, v. 36, n. 22/23, p. 5562, doi. 10.1093/bioinformatics/btaa663
    By:
    • MacDougall, Alistair;
    • Volynkin, Vladimir;
    • Saidi, Rabie;
    • Poggioli, Diego;
    • Zellner, Hermann;
    • Hatton-Ellis, Emma;
    • Joshi, Vishal;
    • O'Donovan, Claire;
    • Orchard, Sandra;
    • Auchincloss, Andrea H;
    • Baratin, Delphine;
    • Bolleman, Jerven;
    • Coudert, Elisabeth;
    • Castro, Edouard de;
    • Hulo, Chantal;
    • Masson, Patrick;
    • Pedruzzi, Ivo;
    • Rivoire, Catherine;
    • Arighi, Cecilia;
    • Wang, Qinghua
    Publication type:
    Article
  • UniRule: a unified rule resource for automatic annotation in the UniProt Knowledgebase.

    Published in:
    Bioinformatics, 2020, v. 36, n. 17, p. 4643, doi. 10.1093/bioinformatics/btaa485
    By:
    • MacDougall, Alistair;
    • Volynkin, Vladimir;
    • Saidi, Rabie;
    • Poggioli, Diego;
    • Zellner, Hermann;
    • Hatton-Ellis, Emma;
    • Joshi, Vishal;
    • O'Donovan, Claire;
    • Orchard, Sandra;
    • Auchincloss, Andrea H;
    • Baratin, Delphine;
    • Bolleman, Jerven;
    • Coudert, Elisabeth;
    • Castro, Edouard de;
    • Hulo, Chantal;
    • Masson, Patrick;
    • Pedruzzi, Ivo;
    • Rivoire, Catherine;
    • Arighi, Cecilia;
    • Wang, Qinghua
    Publication type:
    Article