Works by Ripp, Raymond

Results: 24

PeroxisomeDB: a database for the peroxisomal proteome, functional genomics and disease.

Published in:

Nucleic Acids Research, 2007, v. 35, p. d815, doi. 10.1093/nar/gkl935

By:

Schlüter, Agatha;
Fourcade, Stéphane;
Domènech-Estévez, Enric;
Gabaldón, Toni;
Huerta-Cepas, Jaime;
Berthommier, Guillaume;
Ripp, Raymond;
Wanders, Ronald J. A.;
Poch, Olivier;
Pujol, Aurora

Publication type:

Article

ICDS database: interrupted CoDing sequences in prokaryotic genomes.

Published in:

Nucleic Acids Research, 2006, v. 34, n. suppl 1, p. d338, doi. 10.1093/nar/gkj060

By:

Perrodou, Emmanuel;
Deshayes, Caroline;
Muller, Jean;
Schaeffer, Christine;
Van Dorsselaer, Alain;
Ripp, Raymond;
Poch, Olivier;
Reyrat, Jean-Marc;
Lecompte, Odile

Publication type:

Article

PipeAlign: a new toolkit for protein family analysis.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 13, p. 3829, doi. 10.1093/nar/gkg518

By:

Plewniak, Frédéric;
Bianchetti, Laurent;
Brelivet, Yann;
Carles, Annaick;
Chalmel, Frédéric;
Lecompte, Odile;
Mochel, Thiebaut;
Moulinier, Luc;
Muller, Arnaud;
Muller, Jean;
Prigent, Veronique;
Ripp, Raymond;
Thierry, Jean-Claude;
Thompson, Julie D.;
Wicker, Nicolas;
Poch, Olivier

Publication type:

Article

Comparative analysis of ribosomal proteins in complete genomes: an example of reductive evolution at the domain scale.

Published in:

Nucleic Acids Research, 2002, v. 30, n. 24, p. 5382, doi. 10.1093/nar/gkf693

By:

Lecompte, Odile;
Ripp, Raymond;
Thierry, Jean‐Claude;
Moras, Dino;
Poch, Olivier

Publication type:

Article

Proteome-Scale Detection of Differential Conservation Patterns at Protein and Subprotein Levels with BLUR.

Published in:

Genome Biology & Evolution, 2021, v. 13, n. 1, p. 1, doi. 10.1093/gbe/evaa248

By:

Defosset, Audrey;
Kress, Arnaud;
Nevers, Yannis;
Ripp, Raymond;
Thompson, Julie D;
Poch, Olivier;
Lecompte, Odile

Publication type:

Article

Evolutionary analysis of the ENTH/ANTH/VHS protein superfamily reveals a coevolution between membrane trafficking and metabolism.

Published in:

BMC Genomics, 2012, v. 13, n. 1, p. 297, doi. 10.1186/1471-2164-13-297

By:

De Craene, Johan-Owen;
Ripp, Raymond;
Lecompte, Odile;
Thompson, Julie D.;
Poch, Olivier;
Friant, Sylvie

Publication type:

Article

An integrated analysis of the genome of the hyperthermophilic archaeon Pyrococcus abyssi.

Published in:

Molecular Microbiology, 2003, v. 47, n. 6, p. 1495, doi. 10.1046/j.1365-2958.2003.03381.x

By:

Cohen, Georges N.;
Barbe, Valérie;
Flament, Didier;
Galperin, Michael;
Heilig, Roland;
Lecompte, Odile;
Poch, Olivier;
Prieur, Daniel;
Quérellou, Joël;
Ripp, Raymond;
Thierry, Jean-Claude;
Van der Oost, John;
Weissenbach, Jean;
Zivanovic, Yvan;
Forterre, Patrick

Publication type:

Article

Identification of an Alternative Splicing Product of the Otx2 Gene Expressed in the Neural Retina and Retinal Pigmented Epithelial Cells.

Published in:

PLoS ONE, 2016, v. 11, n. 3, p. 1, doi. 10.1371/journal.pone.0150758

By:

Kole, Christo;
Berdugo, Naomi;
Da Silva, Corinne;
Aït-Ali, Najate;
Millet-Puel, Géraldine;
Pagan, Delphine;
Blond, Frédéric;
Poidevin, Laetitia;
Ripp, Raymond;
Fontaine, Valérie;
Wincker, Patrick;
Zack, Donald J.;
Sahel, José-Alain;
Poch, Olivier;
Léveillard, Thierry

Publication type:

Article

Insights into Ciliary Genes and Evolution from Multi-Level Phylogenetic Profiling.

Published in:

Molecular Biology & Evolution, 2017, v. 34, n. 8, p. 2016, doi. 10.1093/molbev/msx146

By:

Nevers, Yannis;
Prasad, Megana K.;
Poidevin, Laetitia;
Chennen, Kirsley;
Allot, Alexis;
Kress, Arnaud;
Ripp, Raymond;
Thompson, Julie D.;
Dollfus, Hélène;
Poch, Olivier;
Lecompte, Odile

Publication type:

Article

MiSynPat: An integrated knowledge base linking clinical, genetic, and structural data for disease-causing mutations in human mitochondrial aminoacyl-tRNA synthetases.

Published in:

Human Mutation, 2017, v. 38, n. 10, p. 1316, doi. 10.1002/humu.23277

By:

Moulinier, Luc;
Ripp, Raymond;
Castillo, Gaston;
Poch, Olivier;
Sissler, Marie

Publication type:

Article

PARSEC: PAtteRn SEarch and Contextualization.

Published in:

Bioinformatics, 2013, v. 29, n. 20, p. 2643, doi. 10.1093/bioinformatics/btt455

By:

Allot, Alexis;
Anno, Yannick-Noël;
Poidevin, Laetitia;
Ripp, Raymond;
Poch, Olivier;
Lecompte, Odile

Publication type:

Article

The structure of cyclin H: common mode of kinase activation and specific features.

Published in:

EMBO Journal, 1997, v. 16, n. 5, p. 958, doi. 10.1093/emboj/16.5.958

By:

Andersen, Gregers;
Busso, Didier;
Poterszman, Arnaud;
Hwang, Jae Ryoung;
Wurtz, Jean-Marie;
Ripp, Raymond;
Thierry, Jean-Claude;
Egly, Jean-Marc;
Moras, Dino

Publication type:

Article

The Evolutionary Origin of Peroxisomes: An ER-Peroxisome Connection.

Published in:

Molecular Biology & Evolution, 2006, v. 23, n. 4, p. 838

By:

Schlüter, Agatha;
Fourcade, Stéphane;
Ripp, Raymond;
Mandel, Jean Louis;
Poch, Olivier;
Pujol, Aurora

Publication type:

Article

OrthoInspector 2.0: Software and database updates.

Published in:

Bioinformatics, 2015, v. 31, n. 3, p. 447, doi. 10.1093/bioinformatics/btu642

By:

Linard, Benjamin;
Allot, Alexis;
Schneider, Raphaël;
Morel, Can;
Ripp, Raymond;
Bigler, Marc;
Thompson, Julie D.;
Poch, Olivier;
Lecompte, Odile

Publication type:

Article

Enrichment of Circular Code Motifs in the Genes of the Yeast Saccharomyces cerevisiae.

Published in:

Life (2075-1729), 2017, v. 7, n. 4, p. 52, doi. 10.3390/life7040052

By:

Michel, Christian J.;
Ngoune, Viviane Nguefack;
Poch, Olivier;
Ripp, Raymond;
Thompson, Julie D.

Publication type:

Article

OrthoInspector 3.0: open portal for comparative genomics.

Published in:

Nucleic Acids Research, 2019, v. 47, n. D1, p. D411, doi. 10.1093/nar/gky1068

By:

Nevers, Yannis;
Kress, Arnaud;
Defosset, Audrey;
Ripp, Raymond;
Linard, Benjamin;
Thompson, Julie D;
Poch, Olivier;
Lecompte, Odile

Publication type:

Article

KD4v: comprehensible knowledge discovery system for missense variant.

Published in:

Nucleic Acids Research, 2012, v. 40, p. W71, doi. 10.1093/nar/gks474

By:

Luu, Tien-Dao;
Rusu, Alin;
Walter, Vincent;
Linard, Benjamin;
Poidevin, Laetitia;
Ripp, Raymond;
Moulinier, Luc;
Muller, Jean;
Raffelsberger, Wolfgang;
Wicker, Nicolas;
Lecompte, Odile;
Thompson, Julie D.;
Poch, Olivier;
Nguyen, Hoan

Publication type:

Article

MSV3d: database of human MisSense variants mapped to 3D protein structure.

Published in:

Database: The Journal of Biological Databases & Curation, 2012, v. 2012, p. 1

By:

Luu, Tien-Dao;
Rusu, Alin-Mihai;
Walter, Vincent;
Ripp, Raymond;
Moulinier, Luc;
Muller, Jean;
Toursel, Thierry;
Thompson, Julie D.;
Poch, Olivier;
Nguyen, Hoan

Publication type:

Article

MyGeneFriends: A Social Network Linking Genes, Genetic Diseases, and Researchers.

Published in:

2017

By:

Allot, Alexis;
Chennen, Kirsley;
Nevers, Yannis;
Poidevin, Laetitia;
Kress, Arnaud;
Ripp, Raymond;
Thompson, Julie Dawn;
Poch, Olivier;
Lecompte, Odile

Publication type:

journal article

The homeobox gene CHX10/VSX2 regulates RdCVF promoter activity in the inner retina.

Published in:

Human Molecular Genetics, 2010, v. 19, n. 2, p. 250, doi. 10.1093/hmg/ddp484

By:

Reichman, Sacha;
Kalathur, Ravi Kiran Reddy;
Lambard, Sophie;
Aït-Ali, Najate;
Yang, Yanjiang;
Lardenois, Aurélie;
Ripp, Raymond;
Poch, Olivier;
Zack, Donald J.;
Sahel, José-Alain;
Léveillard, Thierry

Publication type:

Article

Integrated Annotation and Analysis of In Situ Hybridization Images Using the ImAnno System: Application to the Ear and Sensory Organs of the Fetal Mouse.

Published in:

PLoS ONE, 2015, v. 10, n. 2, p. 1, doi. 10.1371/journal.pone.0118024

By:

Romand, Raymond;
Ripp, Raymond;
Poidevin, Laetitia;
Boeglin, Marcel;
Geffers, Lars;
Dollé, Pascal;
Poch, Olivier

Publication type:

Article

Transcriptomic Analysis of Human Retinal Detachment Reveals Both Inflammatory Response and Photoreceptor Death.

Published in:

PLoS ONE, 2011, v. 6, n. 12, p. 1, doi. 10.1371/journal.pone.0028791

By:

Delyfer, Marie-Noëlle;
Raffelsberger, Wolfgang;
Mercier, David;
Korobelnik, Jean-François;
Gaudric, Alain;
Charteris, David G.;
Tadayoni, Ramin;
Metge, Florence;
Caputo, Georges;
Barale, Pierre-Olivier;
Ripp, Raymond;
Muller, Jean-Denis;
Poch, Olivier;
Sahel, José-Alain;
Léveillard, Thierry

Publication type:

Article

BAliBASE 3.0: Latest developments of the multiple sequence alignment benchmark.

Published in:

Proteins, 2005, v. 61, n. 1, p. 127, doi. 10.1002/prot.20527

By:

Thompson, Julie D.;
Koehl, Patrice;
Ripp, Raymond;
Poch, Olivier

Publication type:

Article

RETINOBASE: a web database, data mining and analysis platform for gene expression data on retina.

Published in:

BMC Genomics, 2008, v. 9, p. 1, doi. 10.1186/1471-2164-9-208

By:

Reddy Kalathur, Ravi Kiran;
Gagniere, Nicolas;
Berthommier, Guillaume;
Poidevin, Laetitia;
Raffelsberger, Wolfgang;
Ripp, Raymond;
Léveillard, Thierry;
Poch, Olivier

Publication type:

Article