Works by Richard H. Scheuermann

Results: 63
    1
    2

    Bcl-2 Expression in Langerhans' Cell Histiocytosis.

    Published in:
    Pediatric & Developmental Pathology, 1998, v. 1, n. 3, p. 210, doi. 10.1007/s100249900028
    By:
    • Savell, Jr., Van H.;
    • Sherman, Todd;
    • Scheuermann, Richard H.;
    • Siddiqui, Abdul M.;
    • Margraf, Linda R.
    Publication type:
    Article
    3

    Bioinformatics Meets Virology: The European Virus Bioinformatics Center's Second Annual Meeting.

    Published in:
    Viruses (1999-4915), 2018, v. 10, n. 5, p. 256, doi. 10.3390/v10050256
    By:
    • Ibrahim, Bashar;
    • Arkhipova, Ksenia;
    • Andeweg, Arno C.;
    • Posada-Céspedes, Susana;
    • Enault, François;
    • Gruber, Arthur;
    • Koonin, Eugene V.;
    • Kupczok, Anne;
    • Lemey, Philippe;
    • McHardy, Alice C.;
    • McMahon, Dino P.;
    • Pickett, Brett E.;
    • Robertson, David L.;
    • Scheuermann, Richard H.;
    • Zhernakova, Alexandra;
    • Zwart, Mark P.;
    • Schönhuth, Alexander;
    • Dutilh, Bas E.;
    • Marz, Manja
    Publication type:
    Article
    4
    5
    6
    7
    8

    ViPR: an open bioinformatics database and analysis resource for virology research.

    Published in:
    Nucleic Acids Research, 2012, p. D593, doi. 10.1093/nar/gkr859
    By:
    • Pickett, Brett E.;
    • Sadat, Eva L.;
    • Zhang, Yun;
    • Noronha, Jyothi M.;
    • Squires, R. Burke;
    • Hunt, Victoria;
    • Liu, Mengya;
    • Kumar, Sanjeev;
    • Zaremba, Sam;
    • Gu, Zhiping;
    • Zhou, Liwei;
    • Larson, Christopher N.;
    • Dietrich, Jonathan;
    • Klem, Edward B.;
    • Scheuermann, Richard H.
    Publication type:
    Article
    9
    10

    Astrocytic stress response is induced by exposure to astrocyte-binding antibodies expressed by plasmablasts from pediatric patients with acute transverse myelitis.

    Published in:
    Journal of Neuroinflammation, 2024, v. 21, n. 1, p. 1, doi. 10.1186/s12974-024-03127-2
    By:
    • Smith, Chad;
    • Telesford, Kiel M.;
    • Piccirillo, Sara G. M.;
    • Licon-Munoz, Yamhilette;
    • Zhang, Wei;
    • Tse, Key M.;
    • Rivas, Jacqueline R.;
    • Joshi, Chaitanya;
    • Shah, Dilan S.;
    • Wu, Angela X.;
    • Trivedi, Ritu;
    • Christley, Scott;
    • Qian, Yu;
    • Cowell, Lindsay G.;
    • Scheuermann, Richard H.;
    • Stowe, Ann M.;
    • Nguyen, Linda;
    • Greenberg, Benjamin M.;
    • Monson, Nancy L.
    Publication type:
    Article
    11
    12
    13
    14
    15
    16

    VDJServer: A Cloud-Based Analysis Portal and Data Commons for Immune Repertoire Sequences and Rearrangements.

    Published in:
    Frontiers in Immunology, 2018, p. 1, doi. 10.3389/fimmu.2018.00976
    By:
    • Christley, Scott;
    • Scarborough, Walter;
    • Salinas, Eddie;
    • Rounds, William H.;
    • Toby, Inimary T.;
    • Fonner, John M.;
    • Levin, Mikhail K.;
    • Kim, Min;
    • Mock, Stephen A.;
    • Jordan, Christopher;
    • Ostmeyer, Jared;
    • Buntzman, Adam;
    • Rubelt, Florian;
    • Davila, Marco L.;
    • Monson, Nancy L.;
    • Scheuermann, Richard H.;
    • Cowell, Lindsay G.
    Publication type:
    Article
    17
    18
    19

    Influenza Research Database: an integrated bioinformatics resource for influenza research and surveillance.

    Published in:
    Influenza & Other Respiratory Viruses, 2012, v. 6, n. 6, p. 404, doi. 10.1111/j.1750-2659.2011.00331.x
    By:
    • Squires, R. Burke;
    • Noronha, Jyothi;
    • Hunt, Victoria;
    • García-Sastre, Adolfo;
    • Macken, Catherine;
    • Baumgarth, Nicole;
    • Suarez, David;
    • Pickett, Brett E.;
    • Zhang, Yun;
    • Larsen, Christopher N.;
    • Ramsey, Alvin;
    • Zhou, Liwei;
    • Zaremba, Sam;
    • Kumar, Sanjeev;
    • Deitrich, Jon;
    • Klem, Edward;
    • Scheuermann, Richard H.
    Publication type:
    Article
    20
    21
    22
    23
    24
    25
    26
    27
    28

    GenePattern flow cytometry suite.

    Published in:
    Source Code for Biology & Medicine, 2013, v. 8, n. 1, p. 1, doi. 10.1186/1751-0473-8-14
    By:
    • Spidlen, Josef;
    • Barsky, Aaron;
    • Breuer, Karin;
    • Carr, Peter;
    • Nazaire, Marc-Danie;
    • Hill, Barbara Allen;
    • Qian, Yu;
    • Liefeld, Ted;
    • Reich, Michael;
    • Mesirov, Jill P.;
    • Wilkinson, Peter;
    • Scheuermann, Richard H.;
    • Sekaly, Rafick-Pierre;
    • Brinkman, Ryan R.
    Publication type:
    Article
    29
    30
    31
    32

    flowCL: ontology-based cell population labelling in flow cytometry.

    Published in:
    Bioinformatics, 2015, v. 31, n. 8, p. 1337, doi. 10.1093/bioinformatics/btu807
    By:
    • Courtot, Mélanie;
    • Meskas, Justin;
    • Diehl, Alexander D.;
    • Droumeva, Radina;
    • Gottardo, Raphael;
    • Jalali, Adrin;
    • Taghiyar, Mohammad Jafar;
    • Maecker, Holden T.;
    • McCoy, J. Philip;
    • Ruttenberg, Alan;
    • Scheuermann, Richard H.;
    • Brinkman, Ryan R.
    Publication type:
    Article
    33

    flowCL: ontology-based cell population labelling in flow cytometry.

    Published in:
    2015
    By:
    • Courtot, Mélanie;
    • Meskas, Justin;
    • Diehl, Alexander D.;
    • Droumeva, Radina;
    • Gottardo, Raphael;
    • Jalali, Adrin;
    • Taghiyar, Mohammad Jafar;
    • Maecker, Holden T.;
    • McCoy, J. Philip;
    • Ruttenberg, Alan;
    • Scheuermann, Richard H.;
    • Brinkman, Ryan R.
    Publication type:
    Product Review
    34
    35

    VDJML: a file format with tools for capturing the results of inferring immune receptor rearrangements.

    Published in:
    BMC Bioinformatics, 2016, v. 17, p. 5, doi. 10.1186/s12859-016-1214-3
    By:
    • Toby, Inimary T.;
    • Levin, Mikhail K.;
    • Salinas, Edward A.;
    • Christley, Scott;
    • Bhattacharya, Sanchita;
    • Breden, Felix;
    • Buntzman, Adam;
    • Corrie, Brian;
    • Fonner, John;
    • Gupta, Namita T.;
    • Hershberg, Uri;
    • Marthandan, Nishanth;
    • Rosenfeld, Aaron;
    • Rounds, William;
    • Rubelt, Florian;
    • Scarborough, Walter;
    • Scott, Jamie K.;
    • Uduman, Mohamed;
    • Vander Heiden, Jason A.;
    • Scheuermann, Richard H.
    Publication type:
    Article
    36

    Single-nucleus and single-cell transcriptomes compared in matched cortical cell types.

    Published in:
    PLoS ONE, 2018, v. 13, n. 12, p. 1, doi. 10.1371/journal.pone.0209648
    By:
    • Bakken, Trygve E.;
    • Hodge, Rebecca D.;
    • Miller, Jeremy A.;
    • Yao, Zizhen;
    • Nguyen, Thuc Nghi;
    • Aevermann, Brian;
    • Barkan, Eliza;
    • Bertagnolli, Darren;
    • Casper, Tamara;
    • Dee, Nick;
    • Garren, Emma;
    • Goldy, Jeff;
    • Graybuck, Lucas T.;
    • Kroll, Matthew;
    • Lasken, Roger S.;
    • Lathia, Kanan;
    • Parry, Sheana;
    • Rimorin, Christine;
    • Scheuermann, Richard H.;
    • Schork, Nicholas J.
    Publication type:
    Article
    37
    38
    39
    40

    Reference-based cell type matching of in situ image-based spatial transcriptomics data on primary visual cortex of mouse brain.

    Published in:
    Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-36638-8
    By:
    • Zhang, Yun;
    • Miller, Jeremy A.;
    • Park, Jeongbin;
    • Lelieveldt, Boudewijn P.;
    • Long, Brian;
    • Abdelaal, Tamim;
    • Aevermann, Brian D.;
    • Biancalani, Tommaso;
    • Comiter, Charles;
    • Dzyubachyk, Oleh;
    • Eggermont, Jeroen;
    • Langseth, Christoffer Mattsson;
    • Petukhov, Viktor;
    • Scalia, Gabriele;
    • Vaishnav, Eeshit Dhaval;
    • Zhao, Yilin;
    • Lein, Ed S.;
    • Scheuermann, Richard H.
    Publication type:
    Article
    41

    Machine Learning-Based Single Cell and Integrative Analysis Reveals That Baseline mDC Predisposition Correlates With Hepatitis B Vaccine Antibody Response.

    Published in:
    Frontiers in Immunology, 2021, v. 12, p. 1, doi. 10.3389/fimmu.2021.690470
    By:
    • Aevermann, Brian D.;
    • Shannon, Casey P.;
    • Novotny, Mark;
    • Ben-Othman, Rym;
    • Cai, Bing;
    • Zhang, Yun;
    • Ye, Jamie C.;
    • Kobor, Michael S.;
    • Gladish, Nicole;
    • Lee, Amy Huei-Yi;
    • Blimkie, Travis M.;
    • Hancock, Robert E.;
    • Llibre, Alba;
    • Duffy, Darragh;
    • Koff, Wayne C.;
    • Sadarangani, Manish;
    • Tebbutt, Scott J.;
    • Kollmann, Tobias R.;
    • Scheuermann, Richard H.
    Publication type:
    Article
    42

    Multi-Omic Data Integration Allows Baseline Immune Signatures to Predict Hepatitis B Vaccine Response in a Small Cohort.

    Published in:
    Frontiers in Immunology, 2020, v. 11, p. N.PAG, doi. 10.3389/fimmu.2020.578801
    By:
    • Shannon, Casey P.;
    • Blimkie, Travis M.;
    • Ben-Othman, Rym;
    • Gladish, Nicole;
    • Amenyogbe, Nelly;
    • Drissler, Sibyl;
    • Edgar, Rachel D.;
    • Chan, Queenie;
    • Krajden, Mel;
    • Foster, Leonard J.;
    • Kobor, Michael S.;
    • Mohn, William W.;
    • Brinkman, Ryan R.;
    • Le Cao, Kim-Anh;
    • Scheuermann, Richard H.;
    • Tebbutt, Scott J.;
    • Hancock, Robert E.W.;
    • Koff, Wayne C.;
    • Kollmann, Tobias R.;
    • Sadarangani, Manish
    Publication type:
    Article
    43

    Coordinating virus research: The Virus Infectious Disease Ontology.

    Published in:
    PLoS ONE, 2024, v. 19, n. 1, p. 1, doi. 10.1371/journal.pone.0285093
    By:
    • Beverley, John;
    • Babcock, Shane;
    • Carvalho, Gustavo;
    • Cowell, Lindsay G.;
    • Duesing, Sebastian;
    • He, Yongqun;
    • Hurley, Regina;
    • Merrell, Eric;
    • Scheuermann, Richard H.;
    • Smith, Barry
    Publication type:
    Article
    44
    45
    46

    Automated Analysis of Flow Cytometry Data to Reduce Inter-Lab Variation in the Detection of Major Histocompatibility Complex Multimer-Binding T Cells.

    Published in:
    Frontiers in Immunology, 2017, p. 1, doi. 10.3389/fimmu.2017.00858
    By:
    • Pedersen, Natasja Wulff;
    • Chandran, P. Anoop;
    • Qian, Yu;
    • Rebhahn, Jonathan;
    • Petersen, Nadia Viborg;
    • Hoff, Mathilde Dalsgaard;
    • White, Scott;
    • Lee, Alexandra J.;
    • Stanton, Rick;
    • Halgreen, Charlotte;
    • Jakobsen, Kivin;
    • Mosmann, Tim;
    • Gouttefangeas, Cécile;
    • Chan, Cliburn;
    • Scheuermann, Richard H.;
    • Hadrup, Sine Reker
    Publication type:
    Article
    47

    Using single nuclei for RNA-seq to capture the transcriptome of postmortem neurons.

    Published in:
    Nature Protocols, 2016, v. 11, n. 3, p. 499, doi. 10.1038/nprot.2016.015
    By:
    • Krishnaswami, Suguna Rani;
    • Grindberg, Rashel V;
    • Novotny, Mark;
    • Venepally, Pratap;
    • Lacar, Benjamin;
    • Bhutani, Kunal;
    • Linker, Sara B;
    • Pham, Son;
    • Erwin, Jennifer A;
    • Miller, Jeremy A;
    • Hodge, Rebecca;
    • McCarthy, James K;
    • Kelder, Martijn;
    • McCorrison, Jamison;
    • Aevermann, Brian D;
    • Fuertes, Francisco Diez;
    • Scheuermann, Richard H;
    • Lee, Jun;
    • Lein, Ed S;
    • Schork, Nicholas
    Publication type:
    Article
    48

    Standardization of assay representation in the Ontology for Biomedical Investigations.

    Published in:
    Database: The Journal of Biological Databases & Curation, 2021, v. 2021, p. 1, doi. 10.1093/database/baab040
    By:
    • Vita, Randi;
    • Zheng, Jie;
    • Jackson, Rebecca;
    • Dooley, Damion;
    • Overton, James A;
    • Miller, Mark A;
    • Berrios, Daniel C;
    • Scheuermann, Richard H;
    • He, Yongqun;
    • McGinty, Hande Küçük;
    • Brochhausen, Mathias;
    • Lin, Aisyah Yu;
    • Jain, Sagar B;
    • Chibucos, Marcus C;
    • Judkins, John;
    • Giglio, Michelle G;
    • Feng, Irene Y;
    • Burns, Gully;
    • Brush, Matthew H;
    • Peters, Bjoern
    Publication type:
    Article
    49
    50