Works by Ribeiro, Ruy M
1
- PLoS Computational Biology, 2025, v. 21, n. 5, p. 1, doi. 10.1371/journal.pcbi.1012322
- Iyaniwura, Sarafa A.;
- Cassidy, Tyler;
- Ribeiro, Ruy M.;
- Perelson, Alan S.
- Article
2
- Scientific Reports, 2024, v. 14, n. 1, p. 1, doi. 10.1038/s41598-024-51762-9
- Dhaubhadel, Sayera;
- Ganguly, Kumkum;
- Ribeiro, Ruy M.;
- Cohn, Judith D.;
- Hyman, James M.;
- Hengartner, Nicolas W.;
- Kolade, Beauty;
- Singley, Anna;
- Bhattacharya, Tanmoy;
- Finley, Patrick;
- Levin, Drew;
- Thelen, Haedi;
- Cho, Kelly;
- Costa, Lauren;
- Ho, Yuk-Lam;
- Justice, Amy C.;
- Pestian, John;
- Santel, Daniel;
- Zamora-Resendiz, Rafael;
- Crivelli, Silvia
- Article
3
- Frontiers in Immunology, 2019, p. N.PAG, doi. 10.3389/fimmu.2019.00334
- Soares, Maria V.;
- Azevedo, Rita I.;
- Ferreira, Inês A.;
- Bucar, Sara;
- Ribeiro, Ana C.;
- Vieira, Ana;
- Pereira, Paulo N. G.;
- Ribeiro, Ruy M.;
- Ligeiro, Dario;
- Alho, Ana C.;
- Soares, António S.;
- Camacho, Nádia;
- Martins, Carlos;
- Lourenço, Fernanda;
- Moreno, Raul;
- Ritz, Jerome;
- Lacerda, João F.
- Article
4
- Frontiers in Immunology, 2018, p. N.PAG, doi. 10.3389/fimmu.2018.02540
- Minskaia, Ekaterina;
- Saraiva, Barbara C.;
- Soares, Maria M. V.;
- Azevedo, Rita I.;
- Ribeiro, Ruy M.;
- Kumar, Saumya D.;
- Vieira, Ana I. S.;
- Lacerda, João F.
- Article
5
- European Journal of Immunology, 2009, v. 39, n. 1, p. 67, doi. 10.1002/eji.200838554
- Schlub, Timothy E.;
- Venturi, Vanessa;
- Kedzierska, Katherine;
- Wellard, Cameron;
- Doherty, Peter C.;
- Turner, Stephen J.;
- Ribeiro, Ruy M.;
- Hodgkin, Philip D.;
- Davenport, Miles P.
- Article
6
- European Journal of Immunology, 2005, v. 35, n. 1, p. 46, doi. 10.1002/eji.200424996
- Arron, Sarah Tuttleton;
- Ribeiro, Ruy M.;
- Gettie, Agegnehu;
- Bohm, Rudolph;
- Blanchard, James;
- Yu, Jian;
- Perelson, Alan S.;
- Ho, David D.;
- Zhang, Linqi
- Article
7
- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-42435-8
- Policicchio, Benjamin B.;
- Cardozo-Ojeda, Erwing Fabian;
- Xu, Cuiling;
- Ma, Dongzhu;
- He, Tianyu;
- Raehtz, Kevin D.;
- Sivanandham, Ranjit;
- Kleinman, Adam J.;
- Perelson, Alan S.;
- Apetrei, Cristian;
- Pandrea, Ivona;
- Ribeiro, Ruy M.
- Article
8
- BMC Biology, 2013, v. 11, n. 1, p. 1, doi. 10.1186/1741-7007-11-96
- Perelson, Alan S.;
- Ribeiro, Ruy M.
- Article
9
- PLoS Pathogens, 2016, v. 12, n. 9, p. 1, doi. 10.1371/journal.ppat.1005879
- Policicchio, Benjamin B.;
- Xu, Cuiling;
- Brocca-Cofano, Egidio;
- Raehtz, Kevin D.;
- He, Tianyu;
- Ma, Dongzhu;
- Li, Hui;
- Sivanandham, Ranjit;
- Haret-Richter, George S.;
- Dunsmore, Tammy;
- Trichel, Anita;
- Mellors, John W.;
- Hahn, Beatrice H.;
- Shaw, George M.;
- Ribeiro, Ruy M.;
- Pandrea, Ivona;
- Apetrei, Cristian
- Article
10
- PLoS Pathogens, 2016, v. 12, n. 1, p. 1, doi. 10.1371/journal.ppat.1005384
- Pandrea, Ivona;
- Xu, Cuiling;
- Stock, Jennifer L.;
- Frank, Daniel N.;
- Ma, Dongzhu;
- Policicchio, Benjamin B.;
- He, Tianyu;
- Kristoff, Jan;
- Cornell, Elaine;
- Haret-Richter, George S.;
- Trichel, Anita;
- Ribeiro, Ruy M.;
- Tracy, Russell;
- Wilson, Cara;
- Landay, Alan L.;
- Apetrei, Cristian
- Article
11
- PLoS Computational Biology, 2014, v. 10, n. 11, p. 1, doi. 10.1371/journal.pcbi.1003934
- Graw, Frederik;
- Balagopal, Ashwin;
- Kandathil, Abraham J.;
- Ray, Stuart C.;
- Thomas, David L.;
- Ribeiro, Ruy M.;
- Perelson, Alan S.
- Article
12
- PLoS Computational Biology, 2014, v. 10, n. 7, p. 1, doi. 10.1371/journal.pcbi.1003730
- Ciupe, Stanca M.;
- Ribeiro, Ruy M.;
- Perelson, Alan S.
- Article
13
- PLoS Computational Biology, 2011, v. 7, n. 2, p. 1, doi. 10.1371/journal.pcbi.1001081
- Smith, Amber M.;
- Adler, Frederick R.;
- McAuley, Julie L.;
- Gutenkunst, Ryan N.;
- Ribeiro, Ruy M.;
- McCullers, Jonathan A.;
- Perelson, Alan S.
- Article
14
- PLoS Computational Biology, 2010, v. 6, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000906
- de Boer, Rob J.;
- Ribeiro, Ruy M.;
- Perelson, Alan S.
- Article
15
- PLoS Computational Biology, 2009, v. 5, n. 8, p. 1, doi. 10.1371/journal.pcbi.1000467
- Weinberger, Ariel D.;
- Perelson, Alan S.;
- Ribeiro, Ruy M.;
- Weinberger, Leor S.
- Article
16
- Bulletin of Mathematical Biology, 2002, v. 64, n. 2, p. 385, doi. 10.1006/bulm.2001.0282
- Ribeiro, Ruy M.;
- Mohri, Hiroshi;
- Ho, David D.;
- Perelson, Alan S.
- Article
17
- Science Translational Medicine, 2010, v. 2, n. 30, p. 1, doi. 10.1126/scitranslmed.3000544
- Rong, Libin;
- Dahari, Harel;
- Ribeiro, Ruy M.;
- Perelson, Alan S.
- Article
18
- Journal of Infectious Diseases, 2023, v. 228, n. 9, p. 1219, doi. 10.1093/infdis/jiad124
- Thio, Chloe L;
- Taddese, Maraake;
- Saad, Yasmeen;
- Zambo, Kristina;
- Ribeiro, Ruy M;
- Grudda, Tanner;
- Sulkowski, Mark S;
- Sterling, Richard K;
- Zhang, Yang;
- Young, Eric D;
- Hwang, Hyon S;
- Balagopal, Ashwin
- Article
19
- Journal of Infectious Diseases, 2023, v. 288, p. S136, doi. 10.1093/infdis/jiad314
- Ribeiro, Ruy M;
- Choudhary, Manish C;
- Deo, Rinki;
- Giganti, Mark J;
- Moser, Carlee;
- Ritz, Justin;
- Greninger, Alexander L;
- Regan, James;
- Flynn, James P;
- Wohl, David A;
- Currier, Judith S;
- Eron, Joseph J;
- Hughes, Michael D;
- Smith, Davey M;
- Chew, Kara W;
- Daar, Eric S;
- Perelson, Alan S;
- Li, Jonathan Z;
- Team, for the ACTIV-2/A5401 Study
- Article
20
- Journal of Infectious Diseases, 2023, v. 228, n. 3, p. 311, doi. 10.1093/infdis/jiad025
- Sachithanandham, Jaiprasath;
- Balagopal, Ashwin;
- Leep-Lazar, Julia;
- Quinn, Jeffrey;
- Bowden, Kenneth;
- Ward, Kathleen;
- Ribeiro, Ruy M;
- Sulkowski, Mark S
- Article
21
- 2021
- Garrido, Manuel M.;
- Marta, José C.;
- Ribeiro, Ruy M.;
- Pinheiro, Luís C.;
- Guimarães, João T.
- journal article
22
- Nature Medicine, 2012, v. 18, n. 3, p. 355, doi. 10.1038/nm.2698
- Article
23
- PLoS Computational Biology, 2016, v. 12, n. 9, p. 1, doi. 10.1371/journal.pcbi.1005127
- Vaidya, Naveen K.;
- Ribeiro, Ruy M.;
- Perelson, Alan S.;
- Kumar, Anil
- Article
24
- Frontiers in Microbiology, 2018, p. N.PAG, doi. 10.3389/fmicb.2018.01529
- Romero-Severson, Ethan O.;
- Ribeiro, Ruy M.;
- Castro, Mario
- Article
25
- Frontiers in Microbiology, 2018, p. N.PAG, doi. 10.3389/fmicb.2018.01326
- Vaidya, Naveen K.;
- Ribeiro, Ruy M.;
- Liu, Pinghuang;
- Haynes, Barton F.;
- Tomaras, Georgia D.;
- Perelson, Alan S.
- Article
26
- Frontiers in Immunology, 2013, v. 4, p. 1, doi. 10.3389/fimmu.2013.00378
- Caridade, Marta;
- Graca, Luis;
- Ribeiro, Ruy M.
- Article
27
- PLoS ONE, 2018, v. 13, n. 2, p. 1, doi. 10.1371/journal.pone.0190908
- Policicchio, Benjamin Bruno;
- Sette, Paola;
- Xu, Cuiling;
- Haret-Richter, George;
- Dunsmore, Tammy;
- Pandrea, Ivona;
- Ribeiro, Ruy M.;
- Apetrei, Cristian
- Article
28
- PLoS Pathogens, 2024, v. 20, n. 7, p. 1, doi. 10.1371/journal.ppat.1012236
- Phan, Tin;
- Conway, Jessica M.;
- Pagane, Nicole;
- Kreig, Jasmine;
- Sambaturu, Narmada;
- Iyaniwura, Sarafa;
- Li, Jonathan Z.;
- Ribeiro, Ruy M.;
- Ke, Ruian;
- Perelson, Alan S.
- Article
29
- PLoS Pathogens, 2024, v. 20, n. 4, p. 1, doi. 10.1371/journal.ppat.1011680
- Phan, Tin;
- Zitzmann, Carolin;
- Chew, Kara W.;
- Smith, Davey M.;
- Daar, Eric S.;
- Wohl, David A.;
- Eron, Joseph J.;
- Currier, Judith S.;
- Hughes, Michael D.;
- Choudhary, Manish C.;
- Deo, Rinki;
- Li, Jonathan Z.;
- Ribeiro, Ruy M.;
- Ke, Ruian;
- Perelson, Alan S.
- Article
30
- Immunology & Cell Biology, 2013, v. 91, n. 10, p. 652, doi. 10.1038/icb.2013.63
- Caridade, Marta;
- Oliveira, Vanessa G;
- Agua‐Doce, Ana;
- Graca, Luis;
- Ribeiro, Ruy M
- Article
31
- Immunology & Cell Biology, 2007, v. 85, n. 4, p. 287, doi. 10.1038/sj.icb.7100056
- Article
32
- Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-96060-w
- Santos, Catarina Duarte;
- Santos, Ana Filipe;
- das Neves, Rui César;
- Ribeiro, Ruy M.;
- Rodrigues, Fátima;
- Caneiras, Cátia;
- Spruit, Martijn A.;
- Bárbara, Cristina
- Article
33
- Frontiers in Immunology, 2024, p. 1, doi. 10.3389/fimmu.2024.1420284
- Harris, Duane C.;
- Shanker, Apoorv;
- Montoya, Makaela M.;
- Llewellyn, Trent R.;
- Matuszak, Anna R.;
- Lohar, Aditi;
- Kubicek-Sutherland, Jessica Z.;
- Li, Ying Wai;
- Wilding, Kristen;
- Mcmahon, Ben;
- Gnanakaran, Sandrasegaram;
- Ribeiro, Ruy M.;
- Perelson, Alan S.;
- Molina-París, Carmen
- Article
34
- Science Translational Medicine, 2017, v. 9, n. 405, p. 1, doi. 10.1126/scitranslmed.aam5441
- Schechter, Melissa E.;
- Andrade, Bruno B.;
- Tianyu He;
- Richter, George Haret;
- Tosh, Kevin W.;
- Policicchio, Benjamin B.;
- Singh, Amrit;
- Raehtz, Kevin D.;
- Sheikh, Virginia;
- Dongying Ma;
- Brocca-Cofano, Egidio;
- Apetrei, Cristian;
- Tracy, Russel;
- Ribeiro, Ruy M.;
- Sher, Alan;
- Francischetti, Ivo M. B.;
- Pandrea, Ivona;
- Sereti, Irini
- Article
35
- BMC Bioinformatics, 2010, v. 11, p. 170, doi. 10.1186/1471-2105-11-170
- Tatebe, Ken;
- Zeytun, Ahmet;
- Ribeiro, Ruy M.;
- Hoffmann, Robert;
- Harrod, Kevin S.;
- Forst, Christian V.
- Article
36
- PLoS Computational Biology, 2021, v. 17, n. 1, p. 1, doi. 10.1371/journal.pcbi.1008564
- Best, Katharine;
- Barouch, Dan H.;
- Guedj, Jeremie;
- Ribeiro, Ruy M.;
- Perelson, Alan S.
- Article
37
- Journal of Financial Econometrics, 2024, v. 22, n. 3, p. 696, doi. 10.1093/jjfinec/nbad013
- Alves, Rafael P;
- Brito, Diego S de;
- Medeiros, Marcelo C;
- Ribeiro, Ruy M
- Article
38
- Open Forum Infectious Diseases, 2021, v. 8, n. 8, p. 1, doi. 10.1093/ofid/ofab153
- Regan, James;
- Flynn, James P;
- Rosenthal, Alexandra;
- Jordan, Hannah;
- Li, Yijia;
- Chishti, Rida;
- Giguel, Francoise;
- Corry, Heather;
- Coxen, Kendyll;
- Fajnzylber, Jesse;
- Gillespie, Elizabeth;
- Kuritzkes, Daniel R;
- Hacohen, Nir;
- Goldberg, Marcia B;
- Filbin, Michael R;
- Yu, Xu G;
- Baden, Lindsey;
- Ribeiro, Ruy M;
- Perelson, Alan S;
- Conway, Jessica M
- Article
39
- 2019
- Kaderali, Lars;
- Theis, Fabian;
- Ganusov, Vitaly V.;
- Ciupe, Stanca M.;
- Mehr, Ramit;
- Ribeiro, Ruy M.;
- Hernandez-Vargas, Esteban A.
- Editorial
40
- Statistics in Medicine, 2008, v. 27, n. 23, p. 4647, doi. 10.1002/sim.3116
- Perelson, Alan S.;
- Ribeiro, Ruy M.
- Article
41
- PLoS Pathogens, 2015, v. 11, n. 1, p. 1, doi. 10.1371/journal.ppat.1004565
- Yue, Ling;
- Pfafferott, Katja J.;
- Baalwa, Joshua;
- Conrod, Karen;
- Dong, Catherine C.;
- Chui, Cecilia;
- Rong, Rong;
- Claiborne, Daniel T.;
- Prince, Jessica L.;
- Tang, Jianming;
- Ribeiro, Ruy M.;
- Cormier, Emmanuel;
- Hahn, Beatrice H.;
- Perelson, Alan S.;
- Shaw, George M.;
- Karita, Etienne;
- Gilmour, Jill;
- Goepfert, Paul;
- Derdeyn, Cynthia A.;
- Allen, Susan A.
- Article
42
- PLoS Pathogens, 2013, v. 9, n. 10, p. 1, doi. 10.1371/journal.ppat.1003600
- Wijewardana, Viskam;
- Kristoff, Jan;
- Xu, Cuiling;
- Ma, Dongzhu;
- Haret-Richter, George;
- Stock, Jennifer L.;
- Policicchio, Benjamin B.;
- Mobley, Adam D.;
- Nusbaum, Rebecca;
- Aamer, Hadega;
- Trichel, Anita;
- Ribeiro, Ruy M.;
- Apetrei, Cristian;
- Pandrea, Ivona
- Article
43
- PLoS Pathogens, 2013, v. 9, n. 3, p. 1, doi. 10.1371/journal.ppat.1003238
- Smith, Amber M.;
- Adler, Frederick R.;
- Ribeiro, Ruy M.;
- Gutenkunst, Ryan N.;
- McAuley, Julie L.;
- McCullers, Jonathan A.;
- Perelson, Alan S.
- Article
44
- PLoS Pathogens, 2012, v. 8, n. 8, p. 1, doi. 10.1371/journal.ppat.1002880
- Hui Li;
- Stoddard, Mark B.;
- Shuyi Wang;
- Blair, Lily M.;
- Giorgi, Elena E.;
- Parrish, Erica H.;
- Learn, Gerald H.;
- Hraber, Peter;
- Goepfert, Paul A.;
- Saag, Michael S.;
- Denny, Thomas N.;
- Haynes, Barton F.;
- Hahn, Beatrice H.;
- Ribeiro, Ruy M.;
- Perelson, Alan S.;
- Korber, Bette T.;
- Bhattacharya, Tanmoy;
- Shaw, George M.
- Article
45
- PLoS Pathogens, 2012, v. 8, n. 8, p. 1, doi. 10.1371/journal.ppat.1002881
- Ribeiro, Ruy M.;
- Hui Li;
- Shuyi Wang;
- Stoddard, Mark B.;
- Learn, Gerald H.;
- Korber, Bette T.;
- Bhattacharya, Tanmoy;
- Guedj, Jeremie;
- Parrish, Erica H.;
- Hahn, Beatrice H.;
- Shaw, George M.;
- Perelson, Alan S.
- Article
46
- PLoS Pathogens, 2011, v. 7, n. 8, p. 1, doi. 10.1371/journal.ppat.1002170
- Pandrea, Ivona;
- Gaufin, Thaidra;
- Gautam, Rajeev;
- Kristoff, Jan;
- Mandell, Daniel;
- Montefiori, David;
- Keele, Brandon F.;
- Ribeiro, Ruy M.;
- Veazey, Ronald S.;
- Apetrei, Cristian
- Article
47
- PLoS Pathogens, 2010, v. 6, n. 1, p. 1, doi. 10.1371/journal.ppat.1000747
- Klatt, Nichole R.;
- Shudo, Emi;
- Ortiz, Alex M.;
- Engram, Jessica C.;
- Paiardini, Mirko;
- Lawson, Benton;
- Miller, Michael D.;
- Else, James;
- Pandrea, Ivona;
- Estes, Jacob D.;
- Apetrei, Cristian;
- Schmitz, Joern E.;
- Ribeiro, Ruy M.;
- Perelson, Alan S.;
- Silvestri, Guido
- Article
48
- In Vivo, 2021, v. 35, n. 6, p. 3431, doi. 10.21873/invivo.12643
- GARRIDO, MANUEL M.;
- MARTA, JOSÉ C.;
- RIBEIRO, RUY M.;
- PINHEIRO, LUÍS C.;
- HOLDENRIEDER, STEFAN;
- GUIMARÃES, JOÃO T.
- Article
49
- In Vivo, 2021, v. 35, n. 4, p. 2207, doi. 10.21873/invivo.12492
- GARRIDO, MANUEL M.;
- RIBEIRO, RUY M.;
- KRÜGER, KIMBERLY;
- PINHEIRO, LUÍS C.;
- GUIMARÃES, JOÃO T.;
- HOLDENRIEDER, STEFAN
- Article
50
- Journal of Clinical Medicine, 2020, v. 9, n. 11, p. 3449, doi. 10.3390/jcm9113449
- Nogueira, Paulo Jorge;
- de Araújo Nobre, Miguel;
- Costa, Andreia;
- Ribeiro, Ruy M.;
- Furtado, Cristina;
- Bacelar Nicolau, Leonor;
- Camarinha, Catarina;
- Luís, Márcia;
- Abrantes, Ricardo;
- Carneiro, António Vaz
- Article