MGEScan: a Galaxy-based system for identifying retrotransposons in genomes.
- Published in:
- Bioinformatics, 2016, v. 32, n. 16, p. 2502, doi. 10.1093/bioinformatics/btw157
- By:
- Publication type:
- Article
Works by Rho, Mina
Results: 37
1
2
Stitching gene fragments with a network matching algorithm improves gene assembly for metagenomics.
- Published in:
- Bioinformatics, 2012, v. 28, n. 18, p. i363
- By:
- Publication type:
- Article
3
Integrative metagenomic and biochemical studies on rifamycin ADP-ribosyltransferases discovered in the sediment microbiome.
- Published in:
- Scientific Reports, 2018, v. 8, n. 1, p. 1, doi. 10.1038/s41598-018-30547-x
- By:
- Publication type:
- Article
4
Different maturation of gut microbiome in Korean children.
- Published in:
- Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.1036533
- By:
- Publication type:
- Article
5
Deciphering Resistome in Patients With Chronic Obstructive Pulmonary Diseases and Clostridioides difficile Infections.
- Published in:
- Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.919907
- By:
- Publication type:
- Article
6
LTR retroelements in the genome of Daphnia pulex.
- Published in:
- BMC Genomics, 2010, v. 11, p. 425, doi. 10.1186/1471-2164-11-425
- By:
- Publication type:
- Article
7
De novo identification of LTR retrotransposons in eukaryotic genomes.
- Published in:
- BMC Genomics, 2007, v. 8, p. 1, doi. 10.1186/1471-2164-8-90
- By:
- Publication type:
- Article
8
Multimodal deep learning applied to classify healthy and disease states of human microbiome.
- Published in:
- Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-04773-3
- By:
- Publication type:
- Article
9
Comparative analyses of the faecal resistome against β-lactam and quinolone antibiotics in humans and livestock using metagenomic sequencing.
- Published in:
- Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-48221-2
- By:
- Publication type:
- Article
10
Data-Driven Modeling for Species-Level Taxonomic Assignment From 16S rRNA: Application to Human Microbiomes.
- Published in:
- Frontiers in Microbiology, 2020, v. 11, p. N.PAG, doi. 10.3389/fmicb.2020.570825
- By:
- Publication type:
- Article
11
MultiChem: predicting chemical properties using multi-view graph attention network.
- Published in:
- BioData Mining, 2025, v. 18, n. 1, p. 1, doi. 10.1186/s13040-024-00419-4
- By:
- Publication type:
- Article
12
Antibiotic Sensitivity and Nasal Microbiome in Patients with Acute Bacterial Rhinosinusitis.
- Published in:
- Laryngoscope, 2024, v. 134, n. 3, p. 1081, doi. 10.1002/lary.30950
- By:
- Publication type:
- Article
13
Analysis of the association between host genetics, smoking, and sputum microbiota in healthy humans.
- Published in:
- Scientific Reports, 2016, p. 23745, doi. 10.1038/srep23745
- By:
- Publication type:
- Article
14
Stability of Gut Enterotypes in Korean Monozygotic Twins and Their Association with Biomarkers and Diet.
- Published in:
- Scientific Reports, 2014, p. 1, doi. 10.1038/srep07348
- By:
- Publication type:
- Article
15
Photosynthetic functions of Synechococcus in the ocean microbiomes of diverse salinity and seasons.
- Published in:
- PLoS ONE, 2018, v. 13, n. 1, p. 1, doi. 10.1371/journal.pone.0190266
- By:
- Publication type:
- Article
16
Application of computational approaches to analyze metagenomic data.
- Published in:
- Journal of Microbiology, 2021, v. 59, n. 3, p. 233, doi. 10.1007/s12275-021-0632-8
- By:
- Publication type:
- Article
17
ViBE: a hierarchical BERT model to identify eukaryotic viruses using metagenome sequencing data.
- Published in:
- Briefings in Bioinformatics, 2022, v. 23, n. 4, p. 1, doi. 10.1093/bib/bbac204
- By:
- Publication type:
- Article
18
High fecal carriage of blaCTX-M, blaCMY-2, and plasmid-mediated quinolone resistance genes among healthy Korean people in a metagenomic analysis.
- Published in:
- Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-84974-4
- By:
- Publication type:
- Article
19
Discovering microbe-disease associations from the literature using a hierarchical long short-term memory network and an ensemble parser model.
- Published in:
- Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-83966-8
- By:
- Publication type:
- Article
20
Quantitative characterization of Clostridioides difficile population in the gut microbiome of patients with C. difficile infection and their association with clinical factors.
- Published in:
- Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-74090-0
- By:
- Publication type:
- Article
21
Eosinophil‐derived interferon‐γ drives transmembrane protein 119–induced new bone formation in chronic rhinosinusitis with nasal polyps.
- Published in:
- International Forum of Allergy & Rhinology, 2023, v. 13, n. 3, p. 242, doi. 10.1002/alr.23076
- By:
- Publication type:
- Article
22
Analysis of Bacteria-derived Extracellular Vesicles in the Urine of Patients with Sepsis.
- Published in:
- Ethiopian Medical Journal, 2025, v. 63, n. 1, p. 317, doi. 10.4314/emj.v63i1.4
- By:
- Publication type:
- Article
23
Oral microbiome-systemic link studies: perspectives on current limitations and future artificial intelligence-based approaches.
- Published in:
- 2020
- By:
- Publication type:
- Literature Review
24
A novice’s guide to analyzing NGS-derived organelle and metagenome data.
- Published in:
- Algae, 2016, v. 31, n. 2, p. 137, doi. 10.4490/algae.2016.31.6.5
- By:
- Publication type:
- Article
25
Genome-scale metabolic modeling and in silico analysis of opportunistic skin pathogen Cutibacterium acnes.
- Published in:
- Frontiers in Cellular & Infection Microbiology, 2023, p. 1, doi. 10.3389/fcimb.2023.1099314
- By:
- Publication type:
- Article
26
Metagenomic characterization of sphingomyelinase C in the microbiome of humans and environments.
- Published in:
- Frontiers in Cellular & Infection Microbiology, 2022, v. 12, p. 1, doi. 10.3389/fcimb.2022.1015706
- By:
- Publication type:
- Article
27
CRISPR-Cas systems target a diverse collection of invasive mobile genetic elements in human microbiomes.
- Published in:
- Genome Biology, 2013, v. 14, n. 4, p. 1, doi. 10.1186/gb-2013-14-4-r40
- By:
- Publication type:
- Article
28
Independent Mammalian Genome Contractions Following the KT Boundary.
- Published in:
- Genome Biology & Evolution, 2009, v. 1, p. 2, doi. 10.1093/gbe/evp007
- By:
- Publication type:
- Article
29
Functional dynamics of bacterial species in the mouse gut microbiome revealed by metagenomic and metatranscriptomic analyses.
- Published in:
- PLoS ONE, 2020, v. 15, n. 1, p. 1, doi. 10.1371/journal.pone.0227886
- By:
- Publication type:
- Article
30
Interpolative multidimensional scaling techniques for the identification of clusters in very large sequence sets.
- Published in:
- BMC Bioinformatics, 2012, v. 13, n. Suppl 2, p. 1, doi. 10.1186/1471-2105-13-S2-S9
- By:
- Publication type:
- Article
31
Antibiotic resistomes discovered in the gut microbiomes of Korean swine and cattle.
- Published in:
- GigaScience, 2020, v. 9, n. 5, p. N.PAG, doi. 10.1093/gigascience/giaa043
- By:
- Publication type:
- Article
32
iMGEins: detecting novel mobile genetic elements inserted in individual genomes.
- Published in:
- BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-5290-9
- By:
- Publication type:
- Article
33
Biomedical Flat and Nested Named Entity Recognition: Methods, Challenges, and Advances.
- Published in:
- Applied Sciences (2076-3417), 2024, v. 14, n. 20, p. 9302, doi. 10.3390/app14209302
- By:
- Publication type:
- Article
34
FragGeneScan: predicting genes in short and error-prone reads.
- Published in:
- Nucleic Acids Research, 2010, v. 38, n. 20, p. e191, doi. 10.1093/nar/gkq747
- By:
- Publication type:
- Article
35
MGEScan-non-LTR: computational identification and classification of autonomous non-LTR retrotransposons in eukaryotic genomes.
- Published in:
- Nucleic Acids Research, 2009, v. 37, n. 21, p. e143, doi. 10.1093/nar/gkp752
- By:
- Publication type:
- Article
36
MegaR: an interactive R package for rapid sample classification and phenotype prediction using metagenome profiles and machine learning.
- Published in:
- BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-020-03933-4
- By:
- Publication type:
- Article
37
Diverse CRISPRs Evolving in Human Microbiomes.
- Published in:
- PLoS Genetics, 2012, v. 8, n. 6, p. 1, doi. 10.1371/journal.pgen.1002441
- By:
- Publication type:
- Article