Found: 24

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  • Admixture mapping reveals evidence of differential multiple sclerosis risk by genetic ancestry.

    Published in:
    PLoS Genetics, 2019, v. 15, n. 1, p. 1, doi. 10.1371/journal.pgen.1007808
    By:
    • Chi, Calvin;
    • Shao, Xiaorong;
    • Rhead, Brooke;
    • Gonzales, Edlin;
    • Smith, Jessica B.;
    • Xiang, Anny H.;
    • Graves, Jennifer;
    • Waldman, Amy;
    • Lotze, Timothy;
    • Schreiner, Teri;
    • Weinstock-Guttman, Bianca;
    • Aaen, Gregory;
    • Tillema, Jan-Mendelt;
    • Ness, Jayne;
    • Candee, Meghan;
    • Krupp, Lauren;
    • Gorman, Mark;
    • Benson, Leslie;
    • Chitnis, Tanuja;
    • Mar, Soe
    Publication type:
    Article

  • The UCSC Genome Browser database: 2014 update.

    Published in:
    Nucleic Acids Research, 2014, v. 42, n. D1, p. D764, doi. 10.1093/nar/gkt1168
    By:
    • Karolchik, Donna;
    • Barber, Galt P.;
    • Casper, Jonathan;
    • Clawson, Hiram;
    • Cline, Melissa S.;
    • Diekhans, Mark;
    • Dreszer, Timothy R.;
    • Fujita, Pauline A.;
    • Guruvadoo, Luvina;
    • Haeussler, Maximilian;
    • Harte, Rachel A.;
    • Heitner, Steve;
    • Hinrichs, Angie S.;
    • Learned, Katrina;
    • Lee, Brian T.;
    • Li, Chin H.;
    • Raney, Brian J.;
    • Rhead, Brooke;
    • Rosenbloom, Kate R.;
    • Sloan, Cricket A.
    Publication type:
    Article

  • The UCSC Genome Browser database: extensions and updates 2013.

    Published in:
    Nucleic Acids Research, 2013, v. 41, n. 1, p. D64, doi. 10.1093/nar/gks1048
    By:
    • Meyer, Laurence R.;
    • Zweig, Ann S.;
    • Hinrichs, Angie S. Hinrichs;
    • Karolchik, Donna;
    • Kuhn, Robert M.;
    • Matthew Wong;
    • Sloan, Cricket A.;
    • Rosenbloom, Kate R.;
    • Roe, Greg;
    • Rhead, Brooke;
    • Raney, Brian J.;
    • Pohl, Andy;
    • Malladi, Venkat S.;
    • Li, Chin H.;
    • Lee, Brian T.;
    • Learned, Katrina;
    • Kirkup, Vanessa;
    • Fan Hsu;
    • Heitner, Steve;
    • Harte, Rachel A.
    Publication type:
    Article

  • The UCSC Genome Browser database: extensions and updates 2011.

    Published in:
    Nucleic Acids Research, 2012, p. D918, doi. 10.1093/nar/gkr1055
    By:
    • Dreszer, Timothy R.;
    • Karolchik, Donna;
    • Zweig, Ann S.;
    • Hinrichs, Angie S.;
    • Raney, Brian J.;
    • Kuhn, Robert M.;
    • Meyer, Laurence R.;
    • Wong, Mathew;
    • Sloan, Cricket A.;
    • Rosenbloom, Kate R.;
    • Roe, Greg;
    • Rhead, Brooke;
    • Pohl, Andy;
    • Malladi, Venkat S.;
    • Li, Chin H.;
    • Learned, Katrina;
    • Kirkup, Vanessa;
    • Hsu, Fan;
    • Harte, Rachel A.;
    • Guruvadoo, Luvina
    Publication type:
    Article

  • The UCSC Genome Browser database: update 2011.

    Published in:
    Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D876, doi. 10.1093/nar/gkq963
    By:
    • Fujita, Pauline A.;
    • Rhead, Brooke;
    • Zweig, Ann S.;
    • Hinrichs, Angie S.;
    • Karolchik, Donna;
    • Cline, Melissa S.;
    • Goldman, Mary;
    • Barber, Galt P.;
    • Clawson, Hiram;
    • Coelho, Antonio;
    • Diekhans, Mark;
    • Dreszer, Timothy R.;
    • Giardine, Belinda M.;
    • Harte, Rachel A.;
    • Hillman-Jackson, Jennifer;
    • Hsu, Fan;
    • Kirkup, Vanessa;
    • Kuhn, Robert M.;
    • Learned, Katrina;
    • Li, Chin H.
    Publication type:
    Article

  • ENCODE whole-genome data in the UCSC genome browser (2011 update).

    Published in:
    Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D871, doi. 10.1093/nar/gkq1017
    By:
    • Raney, Brian J.;
    • Cline, Melissa S.;
    • Rosenbloom, Kate R.;
    • Dreszer, Timothy R.;
    • Learned, Katrina;
    • Barber, Galt P.;
    • Meyer, Laurence R.;
    • Sloan, Cricket A.;
    • Malladi, Venkat S.;
    • Roskin, Krishna M.;
    • Suh, Bernard B.;
    • Hinrichs, Angie S.;
    • Clawson, Hiram;
    • Zweig, Ann S.;
    • Kirkup, Vanessa;
    • Fujita, Pauline A.;
    • Rhead, Brooke;
    • Smith, Kayla E.;
    • Pohl, Andy;
    • Kuhn, Robert M.
    Publication type:
    Article

  • The UCSC Genome Browser database: update 2010.

    Published in:
    Nucleic Acids Research, 2010, v. 38, p. D613, doi. 10.1093/nar/gkp939
    By:
    • Rhead, Brooke;
    • Karolchik, Donna;
    • Kuhn, Robert M.;
    • Hinrichs, Angie S.;
    • Zweig, Ann S.;
    • Fujita, Pauline A.;
    • Diekhans, Mark;
    • Smith, Kayla E.;
    • Rosenbloom, Kate R.;
    • Raney, Brian J.;
    • Pohl, Andy;
    • Pheasant, Michael;
    • Meyer, Laurence R.;
    • Learned, Katrina;
    • Fan Hsu;
    • Hillman-Jackson, Jennifer;
    • Harte, Rachel A.;
    • Giardine, Belinda;
    • Dreszer, Timothy R.;
    • Clawson, Hiram
    Publication type:
    Article

  • Variation resources at UC Santa Cruz.

    Published in:
    Nucleic Acids Research, 2007, v. 35, p. d716, doi. 10.1093/nar/gkl953
    By:
    • Thomas, Daryl J.;
    • Trumbower, Heather;
    • Kern, Andrew D.;
    • Rhead, Brooke L.;
    • Kuhn, Robert M.;
    • Haussler, David;
    • Kent, W. James
    Publication type:
    Article

  • The ENCODE Project at UC Santa Cruz.

    Published in:
    Nucleic Acids Research, 2007, v. 35, p. d663
    By:
    • Thomas, Daryl J.;
    • Rosenbloom, Kate R.;
    • Clawson, Hiram;
    • Hinrichs, Angie S.;
    • Trumbower, Heather;
    • Raney, Brian J.;
    • Karolchik, Donna;
    • Barber, Galt P.;
    • Harte, Rachel A.;
    • Hillman-Jackson, Jennifer;
    • Kuhn, Robert M.;
    • Rhead, Brooke L.;
    • Smith, Kayla E.;
    • Thakkapallayil, Archana;
    • Zweig, Ann S.
    Publication type:
    Article

  • Proximal and distal effects of genetic susceptibility to multiple sclerosis on the T cell epigenome.

    Published in:
    Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-27427-w
    By:
    • Roostaei, Tina;
    • Klein, Hans-Ulrich;
    • Ma, Yiyi;
    • Felsky, Daniel;
    • Kivisäkk, Pia;
    • Connor, Sarah M.;
    • Kroshilina, Alexandra;
    • Yung, Christina;
    • Kaskow, Belinda J.;
    • Shao, Xiaorong;
    • Rhead, Brooke;
    • Ordovás, José M.;
    • Absher, Devin M.;
    • Arnett, Donna K.;
    • Liu, Jia;
    • Patsopoulos, Nikolaos;
    • Barcellos, Lisa F.;
    • Weiner, Howard L.;
    • De Jager, Philip L.
    Publication type:
    Article

  • Genetic risk factors for pediatric-onset multiple sclerosis.

    Published in:
    Multiple Sclerosis Journal, 2018, v. 24, n. 14, p. 1825, doi. 10.1177/1352458517733551
    By:
    • Gianfrancesco, Milena A.;
    • Stridh, Pernilla;
    • Shao, Xiaorong;
    • Rhead, Brooke;
    • Graves, Jennifer S.;
    • Chitnis, Tanuja;
    • Waldman, Amy;
    • Lotze, Timothy;
    • Schreiner, Teri;
    • Belman, Anita;
    • Greenberg, Benjamin;
    • Weinstock–Guttman, Bianca;
    • Aaen, Gregory;
    • Tillema, Jan M.;
    • Hart, Janace;
    • Caillier, Stacy;
    • Ness, Jayne;
    • Harris, Yolanda;
    • Rubin, Jennifer;
    • Candee, Meghan
    Publication type:
    Article

  • Association of genetic ancestry with molecular tumor profiles in colorectal cancer.

    Published in:
    Genome Medicine, 2024, v. 16, n. 1, p. 1, doi. 10.1186/s13073-024-01373-w
    By:
    • Rhead, Brooke;
    • Hein, David M.;
    • Pouliot, Yannick;
    • Guinney, Justin;
    • De La Vega, Francisco M.;
    • Sanford, Nina N.
    Publication type:
    Article

  • A phenotypic and genomics approach in a multi-ethnic cohort to subtype systemic lupus erythematosus.

    Published in:
    Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-11845-y
    By:
    • Lanata, Cristina M.;
    • Paranjpe, Ishan;
    • Nititham, Joanne;
    • Taylor, Kimberly E.;
    • Gianfrancesco, Milena;
    • Paranjpe, Manish;
    • Andrews, Shan;
    • Chung, Sharon A.;
    • Rhead, Brooke;
    • Barcellos, Lisa F.;
    • Trupin, Laura;
    • Katz, Patricia;
    • Dall'Era, Maria;
    • Yazdany, Jinoos;
    • Sirota, Marina;
    • Criswell, Lindsey A.
    Publication type:
    Article

  • Cell-type-specific resolution epigenetics without the need for cell sorting or single-cell biology.

    Published in:
    Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-11052-9
    By:
    • Rahmani, Elior;
    • Eskin, Eleazar;
    • Sankararaman, Sriram;
    • Halperin, Eran;
    • Schweiger, Regev;
    • Rhead, Brooke;
    • Criswell, Lindsey A.;
    • Barcellos, Lisa F.;
    • Rosset, Saharon
    Publication type:
    Article

  • Global expression and CpG methylation analysis of primary endothelial cells before and after TNFa stimulation reveals gene modules enriched in inflammatory and infectious diseases and associated DMRs.

    Published in:
    PLoS ONE, 2020, v. 15, n. 3, p. 1, doi. 10.1371/journal.pone.0230884
    By:
    • Rhead, Brooke;
    • Shao, Xiaorong;
    • Quach, Hong;
    • Ghai, Poonam;
    • Barcellos, Lisa F.;
    • Bowcock, Anne M.
    Publication type:
    Article

  • Causal Effect of Genetic Variants Associated With Body Mass Index on Multiple Sclerosis Susceptibility.

    Published in:
    American Journal of Epidemiology, 2017, v. 185, n. 3, p. 162, doi. 10.1093/aje/kww120
    By:
    • Gianfrancesco, Milena A.;
    • Glymour, M. Maria;
    • Walter, Stefan;
    • Rhead, Brooke;
    • Xiaorong Shao;
    • Ling Shen;
    • Hong Quach;
    • Hubbard, Alan;
    • Jónsdóttir, Ingileif;
    • Stefánsson, Kári;
    • Strid, Pernilla;
    • Hillert, Jan;
    • Hedström, Anna;
    • Olsson, Tomas;
    • Kockum, Ingrid;
    • Schaefer, Catherine;
    • Alfredsson, Lars;
    • Barcellos, Lisa F.
    Publication type:
    Article

  • miRNA contributions to pediatric‐onset multiple sclerosis inferred from GWAS.

    Published in:
    Annals of Clinical & Translational Neurology, 2019, v. 6, n. 6, p. 1053, doi. 10.1002/acn3.786
    By:
    • Rhead, Brooke;
    • Shao, Xiaorong;
    • Graves, Jennifer S.;
    • Chitnis, Tanuja;
    • Waldman, Amy T.;
    • Lotze, Timothy;
    • Schreiner, Teri;
    • Belman, Anita;
    • Krupp, Lauren;
    • Greenberg, Benjamin M.;
    • Weinstock–Guttman, Bianca;
    • Aaen, Gregory;
    • Tillema, Jan M.;
    • Rodriguez, Moses;
    • Hart, Janace;
    • Caillier, Stacy;
    • Ness, Jayne;
    • Harris, Yolanda;
    • Rubin, Jennifer;
    • Candee, Meghan S.
    Publication type:
    Article

  • Hypomethylation of CYP2E1 and DUSP22 Promoters Associated With Disease Activity and Erosive Disease Among Rheumatoid Arthritis Patients.

    Published in:
    Arthritis & Rheumatology, 2018, v. 70, n. 4, p. 528, doi. 10.1002/art.40408
    By:
    • Mok, Amanda;
    • Rhead, Brooke;
    • Holingue, Calliope;
    • Shao, Xiaorong;
    • Quach, Hong L.;
    • Quach, Diana;
    • Sinclair, Elizabeth;
    • Graf, Jonathan;
    • Imboden, John;
    • Link, Thomas;
    • Harrison, Ruby;
    • Chernitskiy, Vladimir;
    • Barcellos, Lisa F.;
    • Criswell, Lindsey A.
    Publication type:
    Article

  • Rheumatoid Arthritis Naive T Cells Share Hypermethylation Sites With Synoviocytes.

    Published in:
    Arthritis & Rheumatology, 2017, v. 69, n. 3, p. 550, doi. 10.1002/art.39952
    By:
    • Rhead, Brooke;
    • Holingue, Calliope;
    • Cole, Michael;
    • Shao, Xiaorong;
    • Quach, Hong L.;
    • Quach, Diana;
    • Shah, Khooshbu;
    • Sinclair, Elizabeth;
    • Graf, John;
    • Link, Thomas;
    • Harrison, Ruby;
    • Rahmani, Elior;
    • Halperin, Eran;
    • Wang, Wei;
    • Firestein, Gary S.;
    • Barcellos, Lisa F.;
    • Criswell, Lindsey A.
    Publication type:
    Article

  • Increased DNA methylation of SLFN12 in CD4<sup>+</sup> and CD8<sup>+</sup> T cells from multiple sclerosis patients.

    Published in:
    PLoS ONE, 2018, v. 13, n. 10, p. 1, doi. 10.1371/journal.pone.0206511
    By:
    • Rhead, Brooke;
    • Brorson, Ina S.;
    • Berge, Tone;
    • Adams, Cameron;
    • Quach, Hong;
    • Moen, Stine Marit;
    • Berg-Hansen, Pål;
    • Celius, Elisabeth Gulowsen;
    • Sangurdekar, Dipen P.;
    • Bronson, Paola G.;
    • Lea, Rodney A.;
    • Burnard, Sean;
    • Maltby, Vicki E.;
    • Scott, Rodney J.;
    • Lechner-Scott, Jeannette;
    • Harbo, Hanne F.;
    • Bos, Steffan D.;
    • Barcellos, Lisa F.
    Publication type:
    Article

  • UCSC Data Integrator and Variant Annotation Integrator.

    Published in:
    2016
    By:
    • Hinrichs, Angie S.;
    • Raney, Brian J.;
    • Speir, Matthew L.;
    • Rhead, Brooke;
    • Casper, Jonathan;
    • Karolchik, Donna;
    • Kuhn, Robert M.;
    • Rosenbloom, Kate R.;
    • Zweig, Ann S.;
    • Haussler, David;
    • Kent, W. James
    Publication type:
    Web Site Review

  • Racial and Ethnic Differences in Genomic Profiling of Early Onset Colorectal Cancer.

    Published in:
    JNCI: Journal of the National Cancer Institute, 2022, v. 114, n. 5, p. 775, doi. 10.1093/jnci/djac014
    By:
    • Hein, David M;
    • Deng, Weiye;
    • Bleile, MaryLena;
    • Kazmi, Syed Ali;
    • Rhead, Brooke;
    • Vega, Francisco M De La;
    • Jones, Amy L;
    • Kainthla, Radhika;
    • Jiang, Wen;
    • Cantarel, Brandi;
    • Sanford, Nina N
    Publication type:
    Article

  • Author Correction: A phenotypic and genomics approach in a multi-ethnic cohort to subtype systemic lupus erythematosus.

    Published in:
    2020
    By:
    • Lanata, Cristina M.;
    • Paranjpe, Ishan;
    • Nititham, Joanne;
    • Taylor, Kimberly E.;
    • Gianfrancesco, Milena;
    • Paranjpe, Manish;
    • Andrews, Shan;
    • Chung, Sharon A.;
    • Rhead, Brooke;
    • Barcellos, Lisa F.;
    • Trupin, Laura;
    • Katz, Patricia;
    • Dall'Era, Maria;
    • Yazdany, Jinoos;
    • Sirota, Marina;
    • Criswell, Lindsey A.
    Publication type:
    Correction Notice

  • Molecular profiling of a real-world breast cancer cohort with genetically inferred ancestries reveals actionable tumor biology differences between European ancestry and African ancestry patient populations.

    Published in:
    Breast Cancer Research, 2023, v. 25, n. 1, p. 1, doi. 10.1186/s13058-023-01627-2
    By:
    • Miyashita, Minoru;
    • Bell, Joshua S. K.;
    • Wenric, Stephane;
    • Karaesmen, Ezgi;
    • Rhead, Brooke;
    • Kase, Matthew;
    • Kaneva, Kristiyana;
    • De La Vega, Francisco M.;
    • Zheng, Yonglan;
    • Yoshimatsu, Toshio F.;
    • Khramtsova, Galina;
    • Liu, Fang;
    • Zhao, Fangyuan;
    • Howard, Frederick M.;
    • Nanda, Rita;
    • Beaubier, Nike;
    • White, Kevin P.;
    • Huo, Dezheng;
    • Olopade, Olufunmilayo I.
    Publication type:
    Article