Works by Revote, Jerico

Results: 14

MonaGO: a novel gene ontology enrichment analysis visualisation system.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04594-1

By:

Xin, Ziyin;
Cai, Yujun;
Dang, Louis T.;
Burke, Hannah M. S.;
Revote, Jerico;
Charitakis, Natalie;
Bienroth, Denis;
Nim, Hieu T.;
Li, Yuan-Fang;
Ramialison, Mirana

Publication type:

Article

Resourcing, annotating, and analysing synthetic peptides of SARS‐CoV‐2 for immunopeptidomics and other immunological studies.

Published in:

Proteomics, 2021, v. 21, n. 17/18, p. 1, doi. 10.1002/pmic.202100036

By:

Li, Chen;
Revote, Jerico;
Ramarathinam, Sri H.;
Chung, Shan Zou;
Croft, Nathan P.;
Scull, Katherine E.;
Huang, Ziyi;
Ayala, Rochelle;
Braun, Asolina;
Mifsud, Nicole A.;
Illing, Patricia T.;
Faridi, Pouya;
Purcell, Anthony W.

Publication type:

Article

PRISMOID: a comprehensive 3D structure database for post-translational modifications and mutations with functional impact.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 3, p. 1069, doi. 10.1093/bib/bbz050

By:

Li, Fuyi;
Fan, Cunshuo;
Marquez-Lago, Tatiana T;
Leier, André;
Revote, Jerico;
Jia, Cangzhi;
Zhu, Yan;
Smith, A Ian;
Webb, Geoffrey I;
Liu, Quanzhong;
Wei, Leyi;
Li, Jian;
Song, Jiangning

Publication type:

Article

iLearn: an integrated platform and meta-learner for feature engineering, machine-learning analysis and modeling of DNA, RNA and protein sequence data.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 3, p. 1047, doi. 10.1093/bib/bbz041

By:

Chen, Zhen;
Zhao, Pei;
Li, Fuyi;
Marquez-Lago, Tatiana T;
Leier, André;
Revote, Jerico;
Zhu, Yan;
Powell, David R;
Akutsu, Tatsuya;
Webb, Geoffrey I;
Chou, Kuo-Chen;
Smith, A Ian;
Daly, Roger J;
Li, Jian;
Song, Jiangning

Publication type:

Article

Twenty years of bioinformatics research for protease-specific substrate and cleavage site prediction: a comprehensive revisit and benchmarking of existing methods.

Published in:

Briefings in Bioinformatics, 2019, v. 20, n. 6, p. 2150, doi. 10.1093/bib/bby077

By:

Li, Fuyi;
Wang, Yanan;
Li, Chen;
Marquez-Lago, Tatiana T;
Leier, André;
Rawlings, Neil D;
Haffari, Gholamreza;
Revote, Jerico;
Akutsu, Tatsuya;
Chou, Kuo-Chen;
Purcell, Anthony W;
Pike, Robert N;
Webb, Geoffrey I;
Smith, A Ian;
Lithgow, Trevor;
Daly, Roger J;
Whisstock, James C;
Song, Jiangning

Publication type:

Article

Development of a cloud-based Bioinformatics Training Platform.

Published in:

Briefings in Bioinformatics, 2017, v. 18, n. 3, p. 537, doi. 10.1093/bib/bbw032

By:

Revote, Jerico;
Watson-Haigh, Nathan S.;
Quenette, Steve;
Bethwaite, Blair;
McGrath, Annette;
Shang, Catherine A.

Publication type:

Article

Towards an open, collaborative, reusable framework for sharing hands-on bioinformatics training workshops.

Published in:

Briefings in Bioinformatics, 2017, v. 18, n. 2, p. 348, doi. 10.1093/bib/bbw013

By:

Watson-Haigh, Nathan S.;
Revote, Jerico;
Suchecki, Radosław;
Tyagi, Sonika;
Corley, Susan M.;
Shang, Catherine A.;
McGrath, Annette

Publication type:

Article

Next-generation sequencing: a challenge to meet the increasing demand for training workshops in Australia.

Published in:

Briefings in Bioinformatics, 2013, v. 14, n. 5, p. 563, doi. 10.1093/bib/bbt022

By:

Watson-Haigh, Nathan S.;
Shang, Catherine A.;
Haimel, Matthias;
Kostadima, Myrto;
Loos, Remco;
Deshpande, Nandan;
Duesing, Konsta;
Li, Xi;
McGrath, Annette;
McWilliam, Sean;
Michnowicz, Simon;
Moolhuijzen, Paula;
Quenette, Steve;
Revote, Jerico Nico De Leon;
Tyagi, Sonika;
Schneider, Maria V.

Publication type:

Article

DeepCleave: a deep learning predictor for caspase and matrix metalloprotease substrates and cleavage sites.

Published in:

Bioinformatics, 2020, v. 36, n. 4, p. 1057, doi. 10.1093/bioinformatics/btz721

By:

Li, Fuyi;
Chen, Jinxiang;
Leier, André;
Marquez-Lago, Tatiana;
Liu, Quanzhong;
Wang, Yanze;
Revote, Jerico;
Smith, A Ian;
Akutsu, Tatsuya;
Webb, Geoffrey I;
Kurgan, Lukasz;
Song, Jiangning

Publication type:

Article

POSSUM: a bioinformatics toolkit for generating numerical sequence feature descriptors based on PSSM profiles.

Published in:

Bioinformatics, 2017, v. 33, n. 17, p. 2756, doi. 10.1093/bioinformatics/btx302

By:

Jiawei Wang;
Revote, Jerico;
Lithgow, Trevor;
Song, Jiangning;
Bingjiao Yang;
Leier, André;
Marquez-Lago, Tatiana T.;
Webb, Geoffrey;
Kuo-Chen Chou

Publication type:

Article

TrawlerWeb: an online <italic>de novo</italic> motif discovery tool for next-generation sequencing datasets.

Published in:

BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-4630-0

By:

Dang, Louis T.;
Tondl, Markus;
Chiu, Man Ho H.;
Revote, Jerico;
Paten, Benedict;
Tano, Vincent;
Tokolyi, Alex;
Besse, Florence;
Quaife-Ryan, Greg;
Cumming, Helen;
Drvodelic, Mark J.;
Eichenlaub, Michael P.;
Hallab, Jeannette C.;
Stolper, Julian S.;
Rossello, Fernando J.;
Bogoyevitch, Marie A.;
Jans, David A.;
Nim, Hieu T.;
Porrello, Enzo R.;
Hudson, James E.

Publication type:

Article

HIVed, a knowledgebase for differentially expressed human genes and proteins during HIV infection, replication and latency.

Published in:

Scientific Reports, 2017, p. 45509, doi. 10.1038/srep45509

By:

Li, Chen;
Ramarathinam, Sri H.;
Revote, Jerico;
Khoury, Georges;
Song, Jiangning;
Purcell, Anthony W.

Publication type:

Article

SecretEPDB: a comprehensive web-based resource for secreted effector proteins of the bacterial types III, IV and VI secretion systems.

Published in:

Scientific Reports, 2017, p. 41031, doi. 10.1038/srep41031

By:

An, Yi;
Wang, Jiawei;
Li, Chen;
Revote, Jerico;
Zhang, Yang;
Naderer, Thomas;
Hayashida, Morihiro;
Akutsu, Tatsuya;
Webb, Geoffrey I.;
Lithgow, Trevor;
Song, Jiangning

Publication type:

Article

GlycoMine<sup>struct</sup>: a new bioinformatics tool for highly accurate mapping of the human N-linked and O-linked glycoproteomes by incorporating structural features.

Published in:

Scientific Reports, 2016, p. 34595, doi. 10.1038/srep34595

By:

Li, Fuyi;
Li, Chen;
Revote, Jerico;
Zhang, Yang;
Webb, Geoffrey I.;
Li, Jian;
Song, Jiangning;
Lithgow, Trevor

Publication type:

Article