Works by Rest, Joshua S.

Results: 25

Proteome remodeling in the zoospore-to-vegetative cell transition of the stramenopile Aurantiochytrium limacinum reveals candidate ectoplasmic network proteins.

Published in:

PLoS ONE, 2025, v. 20, n. 7, p. 1, doi. 10.1371/journal.pone.0326651

By:

Gil-Gomez, Alejandro;
Leyland, Ben;
Karthikaichamy, Anbarasu;
Adikes, Rebecca C.;
Matus, David Q.;
Rest, Joshua S.;
Collier, Jackie L.

Publication type:

Article

Retroids in Archaea: Phylogeny and Lateral Origins.

Published in:

Molecular Biology & Evolution, 2003, v. 20, n. 7, p. 1134, doi. 10.1093/molbev/msg135

By:

Rest, Joshua S.;
Mindell, David P.

Publication type:

Article

Differential Rates of Evolution for the ZFY-Related Zinc Finger Genes, Zfy, Zfx, and Zfa in the Mouse Genus Mus.

Published in:

Molecular Biology & Evolution, 2003, v. 20, n. 6, p. 999, doi. 10.1093/molbev/msg112

By:

Tucker, Priscilla K.;
Adkins, Ronald M.;
Rest, Joshua S.

Publication type:

Article

Meta-analysis and meta-regression of transcriptomic responses to water stress in Arabidopsis.

Published in:

Plant Journal, 2016, v. 85, n. 4, p. 548, doi. 10.1111/tpj.13124

By:

Rest, Joshua S.;
Wilkins, Olivia;
Yuan, Wei;
Purugganan, Michael D.;
Gurevitch, Jessica

Publication type:

Article

Sulfate Activation Enzymes: Phylogeny and Association with Pyrophosphatase.

Published in:

Journal of Molecular Evolution, 2009, v. 68, n. 1, p. 1, doi. 10.1007/s00239-008-9181-6

By:

Bradley, Michael E.;
Rest, Joshua S.;
Wen-Hsiung Li;
Schwartz, Nancy B.

Publication type:

Article

rtREV: An Amino Acid Substitution Matrix for Inference of Retrovirus and Reverse Transcriptase Phylogeny.

Published in:

Journal of Molecular Evolution, 2002, v. 55, n. 1, p. 65, doi. 10.1007/s00239-001-2304-y

By:

Dimmic, Matthew W.;
Rest, Joshua S.;
Mindell, David P.;
Goldstein, Richard A.

Publication type:

Article

Widespread ancient whole‐genome duplications in Malpighiales coincide with Eocene global climatic upheaval.

Published in:

New Phytologist, 2019, v. 221, n. 1, p. 565, doi. 10.1111/nph.15357

By:

Cai, Liming;
Xi, Zhenxiang;
Amorim, André M.;
Sugumaran, M.;
Rest, Joshua S.;
Liu, Liang;
Davis, Charles C.

Publication type:

Article

Massive Mitochondrial Gene Transfer in a Parasitic Flowering Plant Clade.

Published in:

PLoS Genetics, 2013, v. 9, n. 2, p. 1, doi. 10.1371/journal.pgen.1003265

By:

Zhenxiang Xi;
Wang, Yuguo;
Bradley, Robert K.;
Sugumaran, M.;
Marx, Christopher J.;
Rest, Joshua S.;
Davis, Charles C.

Publication type:

Article

Rapid evolutionary changes in gene expression in response to climate fluctuations.

Published in:

Molecular Ecology, 2021, v. 30, n. 1, p. 193, doi. 10.1111/mec.15583

By:

Hamann, Elena;
Pauli, Christopher S.;
Joly‐Lopez, Zoé;
Groen, Simon C.;
Rest, Joshua S.;
Kane, Nolan C.;
Purugganan, Michael D.;
Franks, Steven J.

Publication type:

Article

Horizontal Gene Transfer and Fusion Spread Carotenogenesis Among Diverse Heterotrophic Protists.

Published in:

Genome Biology & Evolution, 2023, v. 15, n. 3, p. 1, doi. 10.1093/gbe/evad029

By:

Rius, Mariana;
Rest, Joshua S;
Filloramo, Gina V;
Vanclová, Anna M G Novák;
Archibald, John M;
Collier, Jackie L

Publication type:

Article

Distribution of DHPS Mutations Among ITS Subtypes of P. carinii f. sp. hominis.

Published in:

Journal of Eukaryotic Microbiology, 2001, v. 48, p. 126s, doi. 10.1111/j.1550-7408.2001.tb00481.x

By:

MESHNICK, STEVEN R.;
HOSSLER, PAUL A.;
ENGER, KYLE S.;
KAZANJIAN, POWEL;
REST, JOSHUA S.;
MINDELL, DAVID;
LI, BAOZHENG;
LEE, CHAO-HUNG;
NIMRI, LAILA F.;
CARTER, JANE L.;
BEARD, C. BENJAMIN;
HUANG, LAURENCE

Publication type:

Article

Wiring Between Close Nodes in Molecular Networks Evolves More Quickly Than Between Distant Nodes.

Published in:

Molecular Biology & Evolution, 2024, v. 41, n. 5, p. 1, doi. 10.1093/molbev/msae098

By:

Gil-Gomez, Alejandro;
Rest, Joshua S

Publication type:

Article

Ancestral Resurrection of the Drosophila S2E Enhancer Reveals Accessible Evolutionary Paths through Compensatory Change.

Published in:

Molecular Biology & Evolution, 2014, v. 31, n. 4, p. 903, doi. 10.1093/molbev/msu042

By:

Martinez, Carlos;
Rest, Joshua S.;
Kim, Ah-Ram;
Ludwig, Michael;
Kreitman, Martin;
White, Kevin;
Reinitz, John

Publication type:

Article

Nonlinear Fitness Consequences of Variation in Expression Level of a Eukaryotic Gene.

Published in:

Molecular Biology & Evolution, 2013, v. 30, n. 2, p. 448, doi. 10.1093/molbev/mss248

By:

Rest, Joshua S.;
Morales, Christopher M.;
Waldron, John B.;
Opulente, Dana A.;
Fisher, Julius;
Moon, Seungjae;
Bullaughey, Kevin;
Carey, Lucas B.;
Dedousis, Demitri

Publication type:

Article

Horizontal transfer of expressed genes in a parasitic flowering plant.

Published in:

BMC Genomics, 2012, v. 13, n. 1, p. 227, doi. 10.1186/1471-2164-13-227

By:

Zhenxiang Xi;
Bradley, Robert K.;
Wurdack, Kenneth J.;
Wong, K. M.;
Sugumaran, M.;
Bomblies, Kirsten;
Rest, Joshua S.;
Davis, Charles C.

Publication type:

Article

Rapid genome-wide evolution in Brassica rapa populations following drought revealed by sequencing of ancestral and descendant gene pools.

Published in:

Molecular Ecology, 2016, v. 25, n. 15, p. 3622, doi. 10.1111/mec.13615

By:

Franks, Steven J.;
Kane, Nolan C.;
O'Hara, Niamh B.;
Tittes, Silas;
Rest, Joshua S.

Publication type:

Article

Phylogenomics and Coalescent Analyses Resolve Extant Seed Plant Relationships.

Published in:

PLoS ONE, 2013, v. 8, n. 11, p. 1, doi. 10.1371/journal.pone.0080870

By:

Xi, Zhenxiang;
Rest, Joshua S.;
Davis, Charles C.

Publication type:

Article

Coevolution Trumps Pleiotropy: Carbon Assimilation Traits Are Independent of Metabolic Network Structure in Budding Yeast.

Published in:

PLoS ONE, 2013, v. 8, n. 1, p. 1, doi. 10.1371/journal.pone.0054403

By:

Opulente, Dana A.;
Morales, Christopher M.;
Carey, Lucas B.;
Rest, Joshua S.

Publication type:

Article

Contribution of Transcription Factor Binding Site Motif Variants to Condition-Specific Gene Expression Patterns in Budding Yeast.

Published in:

PLoS ONE, 2012, v. 7, n. 2, p. 1, doi. 10.1371/journal.pone.0032274

By:

Rest, Joshua S.;
Bullaughey, Kevin;
Morris, Geoffrey P.;
Li, Wen-Hsiung

Publication type:

Article

Coalescent versus Concatenation Methods and the Placement of Amborella as Sister to Water Lilies.

Published in:

Systematic Biology, 2014, v. 63, n. 6, p. 919, doi. 10.1093/sysbio/syu055

By:

Xi, Zhenxiang;
Liu, Liang;
Rest, Joshua S.;
Davis, Charles C.

Publication type:

Article

2021 Zuckerkandl Prize.

Published in:

2022

By:

Liberles, David A.;
Meyer, Michelle M.;
Rest, Joshua S.;
Teufel, Ashley I.

Publication type:

Announcement

Increased susceptibility to fungal disease accompanies adaptation to drought in Brassica rapa.

Published in:

Evolution, 2016, v. 70, n. 1, p. 241, doi. 10.1111/evo.12833

By:

O'Hara, Niamh B.;
Rest, Joshua S.;
Franks, Steven J.

Publication type:

Article

Strong mitochondrial DNA support for a Cretaceous origin of modern avian lineages.

Published in:

BMC Biology, 2008, v. 6, p. 1, doi. 10.1186/1741-7007-6-6

By:

Brown, Joseph W.;
Rest, Joshua S.;
García-Moreno, Jaime;
Sorenson, Michael D.;
Mindell, David P.

Publication type:

Article

Evolution of pathogen response genes associated with increased disease susceptibility during adaptation to an extreme drought in a Brassica rapa plant population.

Published in:

BMC Ecology & Evolution, 2021, v. 21, p. 1, doi. 10.1186/s12862-021-01789-7

By:

O'Hara, Niamh B.;
Franks, Steven J.;
Kane, Nolan C.;
Tittes, Silas;
Rest, Joshua S.

Publication type:

Article

Common fragile sites are characterized by histone hypoacetylation.

Published in:

Human Molecular Genetics, 2009, v. 18, n. 23, p. 4501, doi. 10.1093/hmg/ddp410

By:

Jiang, Yanwen;
Lucas, Isabelle;
Young, David J.;
Davis, Elizabeth M.;
Karrison, Theodore;
Rest, Joshua S.;
Le Beau, Michelle M.

Publication type:

Article