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Elucidating Diphosphoinositol Polyphosphate Function with Nonhydrolyzable Analogues.
Published in:
Angewandte Chemie International Edition, 2014, v. 53, n. 28, p. 7192, doi. 10.1002/anie.201402905
By:
- Wu, Mingxuan;
- Chong, Lucy S.;
- Capolicchio, Samanta;
- Jessen, Henning J.;
- Resnick, Adam C.;
- Fiedler, Dorothea
Publication type:
Article
Elucidating Diphosphoinositol Polyphosphate Function with Nonhydrolyzable Analogues.
Published in:
Angewandte Chemie, 2014, v. 126, n. 28, p. 7320, doi. 10.1002/ange.201402905
By:
- Wu, Mingxuan;
- Chong, Lucy S.;
- Capolicchio, Samanta;
- Jessen, Henning J.;
- Resnick, Adam C.;
- Fiedler, Dorothea
Publication type:
Article
AutoGVP: a dockerized workflow integrating ClinVar and InterVar germline sequence variant classification.
Published in:
Bioinformatics, 2024, v. 40, n. 3, p. 1, doi. 10.1093/bioinformatics/btae114
By:
- Kim, Jung;
- Naqvi, Ammar S;
- Corbett, Ryan J;
- Kaufman, Rebecca S;
- Vaksman, Zalman;
- Brown, Miguel A;
- Miller, Daniel P;
- Phul, Saksham;
- Geng, Zhuangzhuang;
- Storm, Phillip B;
- Resnick, Adam C;
- Stewart, Douglas R;
- Rokita, Jo Lynne;
- Diskin, Sharon J
Publication type:
Article
Automated temporalis muscle quantification and growth charts for children through adulthood.
Published in:
Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-42501-1
By:
- Zapaishchykova, Anna;
- Liu, Kevin X.;
- Saraf, Anurag;
- Ye, Zezhong;
- Catalano, Paul J.;
- Benitez, Viviana;
- Ravipati, Yashwanth;
- Jain, Arnav;
- Huang, Julia;
- Hayat, Hasaan;
- Likitlersuang, Jirapat;
- Vajapeyam, Sridhar;
- Chopra, Rishi B.;
- Familiar, Ariana M.;
- Nabavidazeh, Ali;
- Mak, Raymond H.;
- Resnick, Adam C.;
- Mueller, Sabine;
- Cooney, Tabitha M.;
- Haas-Kogan, Daphne A.
Publication type:
Article
A metagenomic analysis of the virome of inverted papilloma and squamous cell carcinoma.
Published in:
International Forum of Allergy & Rhinology, 2023, v. 13, n. 11, p. 2055, doi. 10.1002/alr.23182
By:
- Tong, Charles C. L.;
- Lin, Xiang;
- Seckar, Tyler;
- Koptyra, Mateusz;
- Kohanski, Michael A.;
- Cohen, Noam A.;
- Kennedy, David W.;
- Adappa, Nithin D.;
- Papagiannopoulos, Peter;
- Kuan, Edward C.;
- Baranov, Esther;
- Jalaly, Jalal B.;
- Feldman, Michael D.;
- Storm, Phillip B.;
- Resnick, Adam C.;
- Palmer, James N.;
- Wei, Zhi;
- Robertson, Erle S.
Publication type:
Article
Transcriptional immunogenomic analysis reveals distinct immunological clusters in paediatric nervous system tumours.
Published in:
Genome Medicine, 2023, v. 15, n. 1, p. 1, doi. 10.1186/s13073-023-01219-x
By:
- Nabbi, Arash;
- Beck, Pengbo;
- Delaidelli, Alberto;
- Oldridge, Derek A.;
- Sudhaman, Sumedha;
- Zhu, Kelsey;
- Yang, S. Y. Cindy;
- Mulder, David T.;
- Bruce, Jeffrey P.;
- Paulson, Joseph N.;
- Raman, Pichai;
- Zhu, Yuankun;
- Resnick, Adam C.;
- Sorensen, Poul H.;
- Sill, Martin;
- Brabetz, Sebastian;
- Lambo, Sander;
- Malkin, David;
- Johann, Pascal D.;
- Kool, Marcel
Publication type:
Article
The biorepository portal toolkit: an honest brokered, modular service oriented software tool set for biospecimen-driven translational research.
Published in:
BMC Genomics, 2016, v. 17, p. 419, doi. 10.1186/s12864-016-2797-9
By:
- Felmeister, Alex S.;
- Masino, Aaron J.;
- Rivera, Tyler J.;
- Resnick, Adam C.;
- Pennington, Jeffrey W.
Publication type:
Article
A Framework for the Interoperability of Cloud Platforms: Towards FAIR Data in SAFE Environments.
Published in:
Scientific Data, 2024, v. 11, n. 1, p. 1, doi. 10.1038/s41597-024-03041-5
By:
- Grossman, Robert L.;
- Boyles, Rebecca R.;
- Davis-Dusenbery, Brandi N.;
- Haddock, Amanda;
- Heath, Allison P.;
- O'Connor, Brian D.;
- Resnick, Adam C.;
- Taylor, Deanne M.;
- Ahalt, Stan
Publication type:
Article
Transcriptome signatures associated with meningioma progression.
Published in:
Acta Neuropathologica Communications, 2019, v. 7, n. 1, p. N.PAG, doi. 10.1186/s40478-019-0690-x
By:
- Viaene, Angela N.;
- Zhang, Bo;
- Martinez-Lage, Maria;
- Xiang, Chaomei;
- Tosi, Umberto;
- Thawani, Jayesh P.;
- Gungor, Busra;
- Zhu, Yuankun;
- Roccograndi, Laura;
- Zhang, Logan;
- Bailey, Robert L.;
- Storm, Phillip B.;
- O'Rourke, Donald M.;
- Resnick, Adam C.;
- Grady, M. Sean;
- Dahmane, Nadia
Publication type:
Article
Ancestry and frequency of genetic variants in the general population are confounders in the characterization of germline variants linked to cancer.
Published in:
BMC Medical Genetics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12881-020-01033-x
By:
- Bobyn, Anna;
- Zarrei, Mehdi;
- Zhu, Yuankun;
- Hoffman, Mary;
- Brenner, Darren;
- Resnick, Adam C.;
- Scherer, Stephen W.;
- Gallo, Marco
Publication type:
Article
MitoScape: A big-data, machine-learning platform for obtaining mitochondrial DNA from next-generation sequencing data.
Published in:
PLoS Computational Biology, 2021, v. 17, n. 11, p. 1, doi. 10.1371/journal.pcbi.1009594
By:
- Singh, Larry N.;
- Ennis, Brian;
- Loneragan, Bryn;
- Tsao, Noah L.;
- Lopez Sanchez, M. Isabel G.;
- Li, Jianping;
- Acheampong, Patrick;
- Tran, Oanh;
- Trounce, Ian A.;
- Zhu, Yuankun;
- Potluri, Prasanth;
- Emanuel, Beverly S.;
- Rader, Daniel J.;
- Arany, Zoltan;
- Damrauer, Scott M.;
- Resnick, Adam C.;
- Anderson, Stewart A.;
- Wallace, Douglas C.
Publication type:
Article
Immunotherapy for pediatric brain tumors: past and present.
Published in:
Neuro-Oncology, 2019, v. 21, n. 10, p. 1226, doi. 10.1093/neuonc/noz077
By:
- Foster, Jessica B;
- Madsen, Peter J;
- Hegde, Meenakshi;
- Ahmed, Nabil;
- Cole, Kristina A;
- Maris, John M;
- Resnick, Adam C;
- Storm, Phillip B;
- Waanders, Angela J
Publication type:
Article
LGG-14. THE GENETIC LANDSCAPE OF DYSEMBRYOPLASTIC NEUROEPITHELIAL TUMORS.
Published in:
Neuro-Oncology, 2019, v. 21, p. ii102, doi. 10.1093/neuonc/noz036.157
By:
- Jain, Payal;
- Surrey, Lea F;
- Zhang, Bo;
- Straka, Joshua;
- Zhao, Xiaonan;
- Storm, Phillip B;
- Resnick, Adam C;
- Harding, Brian N;
- Li, Marilyn M;
- Buccoliero, Anna M;
- Santi, Mariarita;
- Waanders, Angela J
Publication type:
Article
IMMU-04. DEVELOPMENT OF GPC2-DIRECTED CHIMERIC ANTIGEN RECEPTOR THERAPY FOR PEDIATRIC BRAIN TUMORS WITH IN VITRO TRANSCRIBED mRNA.
Published in:
Neuro-Oncology, 2019, v. 21, p. ii93, doi. 10.1093/neuonc/noz036.125
By:
- Foster, Jessica B;
- Griffin, Crystal;
- Stern, Allison;
- Brimley, Cameron;
- Lane, Maria;
- Buongervino, Samantha;
- Dimitrov, Dimiter S;
- Barrett, David M;
- Resnick, Adam C;
- Maris, John M;
- Bosse, Kristopher R
Publication type:
Article
Phase II study of sorafenib in children with recurrent or progressive low-grade astrocytomas.
Published in:
Neuro-Oncology, 2014, v. 16, n. 10, p. 1408, doi. 10.1093/neuonc/nou059
By:
- Karajannis, Matthias A.;
- Legault, Geneviève;
- Fisher, Michael J.;
- Milla, Sarah S.;
- Cohen, Kenneth J.;
- Wisoff, Jeffrey H.;
- Harter, David H.;
- Goldberg, Judith D.;
- Hochman, Tsivia;
- Merkelson, Amanda;
- Bloom, Michael C.;
- Sievert, Angela J.;
- Resnick, Adam C.;
- Dhall, Girish;
- Jones, David T. W.;
- Korshunov, Andrey;
- Pfister, Stefan M.;
- Eberhart, Charles G.;
- Zagzag, David;
- Allen, Jeffrey C.
Publication type:
Article
Activating mutations in BRAF characterize a spectrum of pediatric low-grade gliomas.
Published in:
Neuro-Oncology, 2010, v. 12, n. 7, p. 621, doi. 10.1093/neuonc/noq007
By:
- Dougherty, Margaret J.;
- Santi, Mariarita;
- Brose, Marcia S.;
- Ma, Changqing;
- Resnick, Adam C.;
- Sievert, Angela J.;
- Storm, Phillip B.;
- Biegel, Jaclyn A.
Publication type:
Article
Duplication of 7q34 in Pediatric Low-Grade Astrocytomas Detected by High-Density Single-Nucleotide Polymorphism-Based Genotype Arrays Results in a Novel BRAF Fusion Gene.
Published in:
Brain Pathology, 2009, v. 19, n. 3, p. 449, doi. 10.1111/j.1750-3639.2008.00225.x
By:
- Sievert, Angela J.;
- Jackson, Eric M.;
- Xiaowu Gai;
- Hakonarson, Hakon;
- Judkins, Alexander R.;
- Resnick, Adam C.;
- Sutton, Leslie N.;
- Storm, Phillip B.;
- Shaikh, Tamim H.;
- Biegel, Jaclyn A.
Publication type:
Article
A transcriptome-based classifier to determine molecular subtypes in medulloblastoma.
Published in:
PLoS Computational Biology, 2020, v. 16, n. 10, p. 1, doi. 10.1371/journal.pcbi.1008263
By:
- Rathi, Komal S.;
- Arif, Sherjeel;
- Koptyra, Mateusz;
- Naqvi, Ammar S.;
- Taylor, Deanne M.;
- Storm, Phillip B.;
- Resnick, Adam C.;
- Rokita, Jo Lynne;
- Raman, Pichai
Publication type:
Article
Radio-pathomic approaches in pediatric neuro-oncology: Opportunities and challenges.
Published in:
Neuro-Oncology Advances, 2023, v. 5, n. 1, p. 1, doi. 10.1093/noajnl/vdad119
By:
- Familiar, Ariana M;
- Mahtabfar, Aria;
- Kazerooni, Anahita Fathi;
- Kiani, Mahsa;
- Vossough, Arastoo;
- Viaene, Angela;
- Storm, Phillip B;
- Resnick, Adam C;
- Nabavizadeh, Ali
Publication type:
Article
Automated tumor segmentation and brain tissue extraction from multiparametric MRI of pediatric brain tumors: A multi-institutional study.
Published in:
Neuro-Oncology Advances, 2023, v. 5, n. 1, p. 1, doi. 10.1093/noajnl/vdad027
By:
- Kazerooni, Anahita Fathi;
- Arif, Sherjeel;
- Madhogarhia, Rachel;
- Khalili, Nastaran;
- Haldar, Debanjan;
- Bagheri, Sina;
- Familiar, Ariana M;
- Anderson, Hannah;
- Haldar, Shuvanjan;
- Tu, Wenxin;
- Kim, Meen Chul;
- Viswanathan, Karthik;
- Muller, Sabine;
- Prados, Michael;
- Kline, Cassie;
- Vidal, Lorenna;
- Aboian, Mariam;
- Storm, Phillip B;
- Resnick, Adam C;
- Ware, Jeffrey B
Publication type:
Article
Harmonization of postmortem donations for pediatric brain tumors and molecular characterization of diffuse midline gliomas.
Published in:
Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-67764-2
By:
- Kambhampati, Madhuri;
- Panditharatna, Eshini;
- Yadavilli, Sridevi;
- Saoud, Karim;
- Lee, Sulgi;
- Eze, Augustine;
- Almira-Suarez, M. I.;
- Hancock, Lauren;
- Bonner, Erin R.;
- Gittens, Jamila;
- Stampar, Mojca;
- Gaonkar, Krutika;
- Resnick, Adam C.;
- Kline, Cassie;
- Ho, Cheng-Ying;
- Waanders, Angela J.;
- Georgescu, Maria-Magdalena;
- Rance, Naomi E.;
- Kim, Yong;
- Johnson, Courtney
Publication type:
Article
BRAF fusions in pediatric histiocytic neoplasms define distinct therapeutic responsiveness to RAF paradox breakers.
Published in:
Pediatric Blood & Cancer, 2021, v. 68, n. 6, p. 1, doi. 10.1002/pbc.28933
By:
- Jain, Payal;
- Surrey, Lea F.;
- Straka, Joshua;
- Russo, Pierre;
- Womer, Richard;
- Li, Marilyn M.;
- Storm, Phillip B.;
- Waanders, Angela J.;
- Hogarty, Michael D.;
- Resnick, Adam C.;
- Picarsic, Jennifer
Publication type:
Article
Integrated molecular and clinical analysis of low-grade gliomas in children with neurofibromatosis type 1 (NF1).
Published in:
Acta Neuropathologica, 2021, v. 141, n. 4, p. 605, doi. 10.1007/s00401-021-02276-5
By:
- Fisher, Michael J.;
- Jones, David T. W.;
- Li, Yimei;
- Guo, Xiaofan;
- Sonawane, Poonam S.;
- Waanders, Angela J.;
- Phillips, Joanna J.;
- Weiss, William A.;
- Resnick, Adam C.;
- Gosline, Sara;
- Banerjee, Jineta;
- Guinney, Justin;
- Gnekow, Astrid;
- Kandels, Daniela;
- Foreman, Nicholas K.;
- Korshunov, Andrey;
- Ryzhova, Marina;
- Massimi, Luca;
- Gururangan, Sri;
- Kieran, Mark W.
Publication type:
Article
Novel FGFR2-INA fusion identified in two low-grade mixed neuronal-glial tumors drives oncogenesis via MAPK and PI3K/mTOR pathway activation.
Published in:
Acta Neuropathologica, 2018, v. 136, n. 1, p. 167, doi. 10.1007/s00401-018-1864-5
By:
- Jain, Payal;
- Surrey, Lea F.;
- Straka, Joshua;
- Luo, Minjie;
- Lin, Fumin;
- Harding, Brian;
- Resnick, Adam C.;
- Storm, Phillip B.;
- Buccoliero, Anna Maria;
- Santi, Mariarita;
- Li, Marilyn M.;
- Waanders, Angela J.
Publication type:
Article
Radiomics for characterization of the glioma immune microenvironment.
Published in:
NPJ Precision Oncology, 2023, v. 7, n. 1, p. 1, doi. 10.1038/s41698-023-00413-9
By:
- Khalili, Nastaran;
- Kazerooni, Anahita Fathi;
- Familiar, Ariana;
- Haldar, Debanjan;
- Kraya, Adam;
- Foster, Jessica;
- Koptyra, Mateusz;
- Storm, Phillip B.;
- Resnick, Adam C.;
- Nabavizadeh, Ali
Publication type:
Article
A germline PALB2 pathogenic variant identified in a pediatric high-grade glioma.
Published in:
Cold Spring Harbor Molecular Case Studies, 2020, v. 6, n. 4, p. 1, doi. 10.1101/mcs.a005397
By:
- Yiming Zhong;
- Schubert, Jeffrey;
- Wu, Jinhua;
- Feng Xu;
- Fumin Lin;
- Cao, Kajia;
- Zelley, Kristin;
- Minjie Luo;
- Foster, Jessica B.;
- Cole, Kristina A.;
- MacFarland, Suzanne P.;
- Resnick, Adam C.;
- Storm, Phillip B.;
- M. Li, Marilyn
Publication type:
Article
Towards consistency in pediatric brain tumor measurements: Challenges, solutions, and the role of artificial intelligence-based segmentation.
Published in:
Neuro-Oncology, 2024, v. 26, n. 9, p. 1557, doi. 10.1093/neuonc/noae093
By:
- Familiar, Ariana M;
- Kazerooni, Anahita Fathi;
- Vossough, Arastoo;
- Ware, Jeffrey B;
- Bagheri, Sina;
- Khalili, Nastaran;
- Anderson, Hannah;
- Haldar, Debanjan;
- Storm, Phillip B;
- Resnick, Adam C;
- Kann, Benjamin H;
- Aboian, Mariam;
- Kline, Cassie;
- Weller, Michael;
- Huang, Raymond Y;
- Chang, Susan M;
- Fangusaro, Jason R;
- Hoffman, Lindsey M;
- Mueller, Sabine;
- Prados, Michael
Publication type:
Article
Alternative lengthening of telomeres (ALT) in pediatric high-grade gliomas can occur without ATRX mutation and is enriched in patients with pathogenic germline mismatch repair (MMR) variants.
Published in:
Neuro-Oncology, 2023, v. 25, n. 7, p. 1331, doi. 10.1093/neuonc/noac278
By:
- Stundon, Jennifer L;
- Ijaz, Heba;
- Gaonkar, Krutika S;
- Kaufman, Rebecca S;
- Jin, Run;
- Karras, Anastasios;
- Vaksman, Zalman;
- Kim, Jung;
- Corbett, Ryan J;
- Lueder, Matthew R;
- Miller, Daniel P;
- Guo, Yiran;
- Santi, Mariarita;
- Li, Marilyn;
- Lopez, Gonzalo;
- Storm, Phillip B;
- Resnick, Adam C;
- Waanders, Angela J;
- MacFarland, Suzanne P;
- Stewart, Douglas R
Publication type:
Article
annoFuse: an R Package to annotate, prioritize, and interactively explore putative oncogenic RNA fusions.
Published in:
BMC Bioinformatics, 2020, v. 21, n. 17, p. 1, doi. 10.1186/s12859-020-03922-7
By:
- Gaonkar, Krutika S.;
- Marini, Federico;
- Rathi, Komal S.;
- Jain, Payal;
- Zhu, Yuankun;
- Chimicles, Nicholas A.;
- Brown, Miguel A.;
- Naqvi, Ammar S.;
- Zhang, Bo;
- Storm, Phillip B.;
- Maris, John M.;
- Raman, Pichai;
- Resnick, Adam C.;
- Strauch, Konstantin;
- Taroni, Jaclyn N.;
- Rokita, Jo Lynne
Publication type:
Article

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