OpenURL Connection Search

Select item for more details and to access through your institution.

Bicluster Sampled Coherence Metric (BSCM) provides an accurate environmental context for phenotype predictions.
Published in:
BMC Systems Biology, 2015, v. 9, p. 1, doi. 10.1186/1752-0509-9-S2-S1
By:
- Danziger, Samuel A.;
- Reiss, David J.;
- Ratushny, Alexander V.;
- Smith, Jennifer J.;
- Plaisier, Christopher L.;
- Aitchison, John D.;
- Baliga, Nitin S.
Publication type:
Article
Evolution of context dependent regulation by expansion of feast/famine regulatory proteins.
Published in:
BMC Systems Biology, 2014, v. 8, n. 1, p. 122, doi. 10.1186/s12918-014-0122-2
By:
- Plaisier, Christopher L;
- Fang-Yin Lo;
- Ashworth, Justin;
- Brooks, Aaron N;
- Beer, Karlyn D;
- Kaur, Amardeep;
- Pan, Min;
- Reiss, David J;
- Facciotti, Marc T;
- Baliga, Nitin S
Publication type:
Article
Large scale physiological readjustment during growth enables rapid, comprehensive and inexpensive systems analysis.
Published in:
BMC Systems Biology, 2010, v. 4, p. 64, doi. 10.1186/1752-0509-4-64
By:
- Facciotti, Marc T.;
- Pang, Wyming L.;
- Fang-yin Lo;
- Whitehead, Kenia;
- Koide, Tie;
- Masumura, Ken-ichi;
- Min Pan;
- Kaur, Amardeep;
- Larsen, David J.;
- Reiss, David J.;
- Linh Hoang;
- Kalisiak, Ewa;
- Northen, Trent;
- Trauger, Sunia A.;
- Siuzdak, Gary;
- Baliga, Nitin S.
Publication type:
Article
cMonkey<sub>2</sub>: Automated, systematic, integrated detection of co-regulated gene modules for any organism.
Published in:
Nucleic Acids Research, 2015, v. 43, n. 13, p. 1, doi. 10.1093/nar/gkv300
By:
- Reiss, David J.;
- Plaisier, Christopher L.;
- Wu, Wei-Ju;
- Baliga, Nitin S.
Publication type:
Article
A high-resolution network model for global gene regulation in Mycobacterium tuberculosis.
Published in:
Nucleic Acids Research, 2014, v. 42, n. 18, p. 11291, doi. 10.1093/nar/gku777
By:
- Peterson, Eliza J.R.;
- Reiss, David J.;
- Turkarslan, Serdar;
- Minch, Kyle J.;
- Rustad, Tige;
- Plaisier, Christopher L.;
- Longabaugh, William J.R.;
- Sherman, David R.;
- Baliga, Nitin S.
Publication type:
Article
Molecular mechanisms of system responses to novel stimuli are predictable from public data.
Published in:
Nucleic Acids Research, 2014, v. 42, n. 3, p. 1442, doi. 10.1093/nar/gkt938
By:
- Danziger, Samuel A.;
- Ratushny, Alexander V.;
- Smith, Jennifer J.;
- Saleem, Ramsey A.;
- Wan, Yakun;
- Arens, Christina E.;
- Armstrong, Abraham M.;
- Sitko, Katherine;
- Chen, Wei-Ming;
- Chiang, Jung-Hsien;
- Reiss, David J.;
- Baliga, Nitin S.;
- Aitchison, John D.
Publication type:
Article
Network portal: a database for storage, analysis and visualization of biological networks.
Published in:
Nucleic Acids Research, 2014, v. 42, n. D1, p. D184, doi. 10.1093/nar/gkt1190
By:
- Turkarslan, Serdar;
- Wurtmann, Elisabeth J.;
- Wu, Wei-Ju;
- Jiang, Ning;
- Bare, J. Christopher;
- Foley, Karen;
- Reiss, David J.;
- Novichkov, Pavel;
- Baliga, Nitin S.
Publication type:
Article
Global analysis of mRNA stability in Mycobacterium tuberculosis.
Published in:
Nucleic Acids Research, 2013, v. 41, n. 1, p. 509, doi. 10.1093/nar/gks1019
By:
- Rustad, Tige R.;
- Minch, Kyle J.;
- Brabant, William;
- Winkler, Jessica K.;
- Reiss, David J.;
- Baliga, Nitin S.;
- Sherman, David R.
Publication type:
Article
A generalizable data-driven multicellular model of pancreatic ductal adenocarcinoma.
Published in:
GigaScience, 2020, v. 9, n. 7, p. 1, doi. 10.1093/gigascience/giaa075
By:
- Aguilar, Boris;
- Gibbs, David L;
- Reiss, David J;
- McConnell, Mark;
- Danziger, Samuel A;
- Dervan, Andrew;
- Trotter, Matthew;
- Bassett, Douglas;
- Hershberg, Robert;
- Ratushny, Alexander V;
- Shmulevich, Ilya
Publication type:
Article
Inference of Expanded Lrp-Like Feast/Famine Transcription Factor Targets in a Non-Model Organism Using Protein Structure-Based Prediction.
Published in:
PLoS ONE, 2014, v. 9, n. 9, p. 1, doi. 10.1371/journal.pone.0107863
By:
- Ashworth, Justin;
- Plaisier, Christopher L.;
- Lo, Fang Yin;
- Reiss, David J.;
- Baliga, Nitin S.
Publication type:
Article
REFORMING THE RESIDENTIAL MORTGAGE-BACKED SECURITIES MARKET.
Published in:
2012
By:
- Reiss, David J.
Publication type:
Essay
Integration and visualization of systems biologydata in context of the genome.
Published in:
BMC Bioinformatics, 2010, v. 11, p. 382, doi. 10.1186/1471-2105-11-382
By:
- Bare, J. Christopher;
- Koide, Tie;
- Reiss, David J.;
- Tenenbaum, Dan;
- Baliga, Nitin S.
Publication type:
Article
The Gaggle: An open-source software system for integrating bioinformatics software and data sources.
Published in:
BMC Bioinformatics, 2006, v. 7, p. 176, doi. 10.1186/1471-2105-7-176
By:
- Shannon, Paul T;
- Reiss, David J;
- Bonneau, Richard;
- Baliga, Nitin S
Publication type:
Article
Tools enabling the elucidation of molecular pathways active in human disease: Application to Hepatitis C virus infection.
Published in:
BMC Bioinformatics, 2005, v. 6, p. 154, doi. 10.1186/1471-2105-6-154
By:
- Reiss, David J.;
- Avila-Campillo, Iliana;
- Thorsson, Vesteinn;
- Schwikowski, Benno;
- Galitski, Timothy
Publication type:
Article
ADAPTS: Automated deconvolution augmentation of profiles for tissue specific cells.
Published in:
PLoS ONE, 2019, v. 14, n. 11, p. 1, doi. 10.1371/journal.pone.0224693
By:
- Danziger, Samuel A.;
- Gibbs, David L.;
- Shmulevich, Ilya;
- McConnell, Mark;
- Trotter, Matthew W. B.;
- Schmitz, Frank;
- Reiss, David J.;
- Ratushny, Alexander V.
Publication type:
Article
Mechanism for microbial population collapse in a fluctuating resource environment.
Published in:
Molecular Systems Biology, 2017, v. 13, n. 3, p. n/a, doi. 10.15252/msb.20167058
By:
- Turkarslan, Serdar;
- Raman, Arjun V;
- Thompson, Anne W;
- Arens, Christina E;
- Gillespie, Mark A;
- Netzer, Frederick;
- Hillesland, Kristina L;
- Stolyar, Sergey;
- López García de Lomana, Adrian;
- Reiss, David J;
- Gorman‐Lewis, Drew;
- Zane, Grant M;
- Ranish, Jeffrey A;
- Wall, Judy D;
- Stahl, David A;
- Baliga, Nitin S
Publication type:
Article
A system-level model for the microbial regulatory genome.
Published in:
Molecular Systems Biology, 2014, v. 10, n. 7, p. n/a, doi. 10.15252/msb.20145160
By:
- Brooks, Aaron N;
- Reiss, David J;
- Allard, Antoine;
- Wu, Wei‐Ju;
- Salvanha, Diego M;
- Plaisier, Christopher L;
- Chandrasekaran, Sriram;
- Pan, Min;
- Kaur, Amardeep;
- Baliga, Nitin S
Publication type:
Article
Niche adaptation by expansion and reprogramming of general transcription factors.
Published in:
Molecular Systems Biology, 2011, v. 7, n. 1, p. 1, doi. 10.1038/msb.2011.87
By:
- Turkarslan, Serdar;
- Reiss, David J;
- Gibbins, Goodwin;
- Su, Wan Lin;
- Pan, Min;
- Bare, J Christopher;
- Plaisier, Christopher L;
- Baliga, Nitin S
Publication type:
Article
Coordination of frontline defense mechanisms under severe oxidative stress.
Published in:
Molecular Systems Biology, 2010, v. 6, n. 1, p. 1, doi. 10.1038/msb.2010.50
By:
- Kaur, Amardeep;
- Van, Phu T;
- Busch, Courtney R;
- Robinson, Courtney K;
- Pan, Min;
- Pang, Wyming Lee;
- Reiss, David J;
- DiRuggiero, Jocelyne;
- Baliga, Nitin S
Publication type:
Article
A single transcription factor regulates evolutionarily diverse but functionally linked metabolic pathways in response to nutrient availability.
Published in:
Molecular Systems Biology, 2009, v. 5, n. 1, p. 282, doi. 10.1038/msb.2009.40
By:
- Schmid, Amy K;
- Reiss, David J;
- Pan, Min;
- Koide, Tie;
- Baliga, Nitin S
Publication type:
Article
Prevalence of transcription promoters within archaeal operons and coding sequences.
Published in:
Molecular Systems Biology, 2009, v. 5, n. 1, p. 285, doi. 10.1038/msb.2009.42
By:
- Koide, Tie;
- Reiss, David J;
- Bare, J Christopher;
- Pang, Wyming Lee;
- Facciotti, Marc T;
- Schmid, Amy K;
- Pan, Min;
- Marzolf, Bruz;
- Van, Phu T;
- Lo, Fang‐Yin;
- Pratap, Abhishek;
- Deutsch, Eric W;
- Peterson, Amelia;
- Martin, Dan;
- Baliga, Nitin S
Publication type:
Article
An integrated systems approach for understanding cellular responses to gamma radiation.
Published in:
Molecular Systems Biology, 2006, v. 2, n. 1, p. 1, doi. 10.1038/msb4100091
By:
- Whitehead, Kenia;
- Kish, Adrienne;
- Pan, Min;
- Kaur, Amardeep;
- Reiss, David J;
- King, Nichole;
- Hohmann, Laura;
- DiRuggiero, Jocelyne;
- Baliga, Nitin S
Publication type:
Article
The DNA-binding network of Mycobacterium tuberculosis.
Published in:
Nature Communications, 2015, v. 6, n. 1, p. 5829, doi. 10.1038/ncomms6829
By:
- Minch, Kyle J.;
- Rustad, Tige R.;
- Peterson, Eliza J. R.;
- Winkler, Jessica;
- Reiss, David J.;
- Ma, Shuyi;
- Hickey, Mark;
- Brabant, William;
- Morrison, Bob;
- Turkarslan, Serdar;
- Mawhinney, Chris;
- Galagan, James E.;
- Price, Nathan D.;
- Baliga, Nitin S.;
- Sherman, David R.
Publication type:
Article
Bone marrow microenvironments that contribute to patient outcomes in newly diagnosed multiple myeloma: A cohort study of patients in the Total Therapy clinical trials.
Published in:
2020
By:
- Danziger, Samuel A.;
- McConnell, Mark;
- Gockley, Jake;
- Young, Mary H.;
- Rosenthal, Adam;
- Schmitz, Frank;
- Reiss, David J.;
- Farmer, Phil;
- Alapat, Daisy V.;
- Singh, Amrit;
- Ashby, Cody;
- Bauer, Michael;
- Ren, Yan;
- Smith, Kelsie;
- Couto, Suzana S.;
- van Rhee, Frits;
- Davies, Faith;
- Zangari, Maurizio;
- Petty, Nathan;
- Orlowski, Robert Z.
Publication type:
journal article
Model-based deconvolution of genome-wide DNA binding.
Published in:
Bioinformatics, 2008, v. 24, n. 3, p. 396, doi. 10.1093/bioinformatics/btm592
By:
- David J. Reiss;
- Marc T. Facciotti;
- Nitin S. Baliga
Publication type:
Article
Predicting protein–peptide interactions via a network-based motif sampler.
Published in:
Bioinformatics, 2004, v. 20, n. suppl_1, p. i274, doi. 10.1093/bioinformatics/bth922
By:
- Reiss, David J.;
- Schwikowski, Benno
Publication type:
Article
Predicting protein–peptide interactions via a network-based motif sampler.
Published in:
Bioinformatics, 2004, v. 20, p. i274, doi. 10.1093/bioinformatics/bth922
By:
- Reiss, David J.;
- Schwikowski, Benno
Publication type:
Article
Genetic program activity delineates risk, relapse, and therapy responsiveness in multiple myeloma.
Published in:
NPJ Precision Oncology, 2021, v. 5, n. 1, p. 1, doi. 10.1038/s41698-021-00185-0
By:
- Wall, Matthew A.;
- Turkarslan, Serdar;
- Wu, Wei-Ju;
- Danziger, Samuel A.;
- Reiss, David J.;
- Mason, Mike J.;
- Dervan, Andrew P.;
- Trotter, Matthew W. B.;
- Bassett, Douglas;
- Hershberg, Robert M.;
- Lomana, Adrián López García de;
- Ratushny, Alexander V.;
- Baliga, Nitin S.
Publication type:
Article
FIRST PRINCIPLES FOR AN EFFECTIVE FEDERAL HOUSING POLICY.
Published in:
Brooklyn Journal of International Law, 2010, v. 35, n. 3, p. 795
By:
- Reiss, David J.
Publication type:
Article
Learning transcriptional networks from the integration of ChIP–chip and expression data in a non-parametric model.
Published in:
Bioinformatics, 2010, v. 26, n. 15, p. 1879, doi. 10.1093/bioinformatics/btq289
By:
- Youn, Ahrim;
- Reiss, David J.;
- Stuetzle, Werner
Publication type:
Article
REMIC TAX ENFORCEMENT AS FINANCIAL-MARKET REGULATOR.
Published in:
University of Pennsylvania Journal of Business Law, 2014, v. 16, n. 3, p. 663
By:
- Borden, Bradley T.;
- Reiss, David J.
Publication type:
Article

Found: 31