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Epigenetic and Metabolomic Biomarkers for Biological Age: A Comparative Analysis of Mortality and Frailty Risk.
- Published in:
- Journals of Gerontology Series A: Biological Sciences & Medical Sciences, 2023, v. 78, n. 10, p. 1753, doi. 10.1093/gerona/glad137
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- Article
Polygenic Risk Score of Longevity Predicts Longer Survival Across an Age Continuum.
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- Journals of Gerontology Series A: Biological Sciences & Medical Sciences, 2021, v. 76, n. 5, p. 750, doi. 10.1093/gerona/glaa289
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- Publication type:
- Article
CBA: Cluster-Guided Batch Alignment for Single Cell RNA-seq.
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- Frontiers in Genetics, 2021, v. 11, p. N.PAG, doi. 10.3389/fgene.2021.644211
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- Publication type:
- Article
Co-expression Patterns between ATN1 and ATXN2 Coincide with Brain Regions Affected in Huntington's Disease.
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- Frontiers in Molecular Neuroscience, 2017, p. 1, doi. 10.3389/fnmol.2017.00399
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- Publication type:
- Article
TREM2 Burden associates solely with Alzheimer's Disease, and decreases the Chance to become a Centenarian.
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- Alzheimer's & Dementia: The Journal of the Alzheimer's Association, 2023, v. 19, p. 1, doi. 10.1002/alz.078234
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- Publication type:
- Article
TREM2 Burden associates solely with Alzheimer's Disease, and decreases the Chance to become a Centenarian.
- Published in:
- Alzheimer's & Dementia: The Journal of the Alzheimer's Association, 2023, v. 19, p. 1, doi. 10.1002/alz.078234
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- Publication type:
- Article
The correlation between neuropathology levels and cognitive performance in centenarians.
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- Alzheimer's & Dementia: The Journal of the Alzheimer's Association, 2023, v. 19, n. 11, p. 5036, doi. 10.1002/alz.13087
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- Publication type:
- Article
SIRV: spatial inference of RNA velocity at the single-cell resolution.
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- NAR Genomics & Bioinformatics, 2024, v. 6, n. 3, p. 1, doi. 10.1093/nargab/lqae100
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- Publication type:
- Article
Single-cell reference mapping to construct and extend cell-type hierarchies.
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- NAR Genomics & Bioinformatics, 2023, v. 5, n. 3, p. 1, doi. 10.1093/nargab/lqad070
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- Publication type:
- Article
Differential analysis of binarized single-cell RNA sequencing data captures biological variation.
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- NAR Genomics & Bioinformatics, 2021, v. 3, n. 4, p. 1, doi. 10.1093/nargab/lqab118
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- Publication type:
- Article
Longitudinal Dynamics of Human B-Cell Response at the Single-Cell Level in Response to Tdap Vaccination.
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- Vaccines, 2021, v. 9, n. 11, p. 1352, doi. 10.3390/vaccines9111352
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- Publication type:
- Article
Genome-wide association study of frontotemporal dementia identifies a C9ORF72 haplotype with a median of 12-G4C2 repeats that predisposes to pathological repeat expansions.
- Published in:
- Translational Psychiatry, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41398-021-01577-3
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- Publication type:
- Article
Extreme enrichment of VNTR-associated polymorphicity in human subtelomeres: genes with most VNTRs are predominantly expressed in the brain.
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- Translational Psychiatry, 2020, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41398-020-01060-5
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- Publication type:
- Article
Immune response and endocytosis pathways are associated with the resilience against Alzheimer's disease.
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- Translational Psychiatry, 2020, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41398-020-01018-7
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- Publication type:
- Article
Technical Report: A Comprehensive Comparison between Different Quantification Versions of Nightingale Health's 1 H-NMR Metabolomics Platform.
- Published in:
- Metabolites (2218-1989), 2023, v. 13, n. 12, p. 1181, doi. 10.3390/metabo13121181
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- Article
Benchmarking Outlier Detection Methods for Detecting IEM Patients in Untargeted Metabolomics Data.
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- Metabolites (2218-1989), 2023, v. 13, n. 1, p. 97, doi. 10.3390/metabo13010097
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- Publication type:
- Article
Using Out-of-Batch Reference Populations to Improve Untargeted Metabolomics for Screening Inborn Errors of Metabolism.
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- Metabolites (2218-1989), 2021, v. 11, n. 1, p. 8, doi. 10.3390/metabo11010008
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- Publication type:
- Article
BrainScope: interactive visual exploration of the spatial and temporal human brain transcriptome.
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- Nucleic Acids Research, 2017, v. 45, n. 10, p. 1, doi. 10.1093/nar/gkx046
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- Publication type:
- Article
WISECONDOR: detection of fetal aberrations from shallow sequencing maternal plasma based on a within-sample comparison scheme.
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- Nucleic Acids Research, 2014, v. 42, n. 5, p. e31, doi. 10.1093/nar/gkt992
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- Publication type:
- Article
Hierarchical progressive learning of cell identities in single-cell data.
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- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-23196-8
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- Publication type:
- Article
Benchmarking variational AutoEncoders on cancer transcriptomics data.
- Published in:
- PLoS ONE, 2023, v. 18, n. 10, p. 1, doi. 10.1371/journal.pone.0292126
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- Publication type:
- Article
An expression profile for diagnosis of lymph node metastases from primary head and neck squamous cell carcinomas.
- Published in:
- Nature Genetics, 2005, v. 37, n. 2, p. 182, doi. 10.1038/ng1502
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- Publication type:
- Article
Determining epitope specificity of T-cell receptors with transformers.
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- Bioinformatics, 2023, v. 39, n. 11, p. 1, doi. 10.1093/bioinformatics/btad632
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- Publication type:
- Article
Cell type matching across species using protein embeddings and transfer learning.
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- Bioinformatics, 2023, v. 39, p. i404, doi. 10.1093/bioinformatics/btad248
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- Publication type:
- Article
Unsupervised protein embeddings outperform hand-crafted sequence and structure features at predicting molecular function.
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- Bioinformatics, 2021, v. 37, n. 2, p. 162, doi. 10.1093/bioinformatics/btaa701
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- Publication type:
- Article
Pattern recognition in bioinformatics.
- Published in:
- Briefings in Bioinformatics, 2013, v. 14, n. 5, p. 633, doi. 10.1093/bib/bbt020
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- Article
Schizophyllum commune has an extensive and functional alternative splicing repertoire.
- Published in:
- Scientific Reports, 2016, p. 33640, doi. 10.1038/srep33640
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- Publication type:
- Article
Improved intra-array and interarray normalization of peptide microarray phosphorylation for phosphorylome and kinome profiling by rational selection of relevant spots.
- Published in:
- Scientific Reports, 2016, p. 26695, doi. 10.1038/srep26695
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- Publication type:
- Article
Pan-cancer subtyping in a 2D-map shows substructures that are driven by specific combinations of molecular characteristics.
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- Scientific Reports, 2016, p. 24949, doi. 10.1038/srep24949
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- Publication type:
- Article
Hypergeometric analysis of tiling-array and sequence data: detection and interpretation of peaks.
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- Advances & Applications in Bioinformatics & Chemistry, 2013, v. 6, p. 55, doi. 10.2147/AABC.S51271
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- Article
Insight into Neutral and Disease-Associated Human Genetic Variants through Interpretable Predictors.
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- PLoS ONE, 2015, v. 10, n. 3, p. 1, doi. 10.1371/journal.pone.0120729
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- Publication type:
- Article
Analysis of Tumor Heterogeneity and Cancer Gene Networks Using Deep Sequencing of MMTV-Induced Mouse Mammary Tumors
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- PLoS ONE, 2013, v. 8, n. 5, p. 1, doi. 10.1371/journal.pone.0062113
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- Publication type:
- Article
Exploring Sequence Characteristics Related to High-Level Production of Secreted Proteins in Aspergillus niger.
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- PLoS ONE, 2012, v. 7, n. 10, p. 1, doi. 10.1371/journal.pone.0045869
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- Publication type:
- Article
Integration of Clinical and Gene Expression Data Has a Synergetic Effect on Predicting Breast Cancer Outcome.
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- PLoS ONE, 2012, v. 7, n. 7, p. 1, doi. 10.1371/journal.pone.0040358
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- Publication type:
- Article
Understanding Regulation of Metabolism through Feasibility Analysis.
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- PLoS ONE, 2012, v. 7, n. 7, p. 1, doi. 10.1371/journal.pone.0039396
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- Publication type:
- Article
An Evaluation Protocol for Subtype-Specific Breast Cancer Event Prediction.
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- PLoS ONE, 2011, v. 6, n. 7, p. 1, doi. 10.1371/journal.pone.0021681
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- Publication type:
- Article
Pooling breast cancer datasets has a synergetic effect on classification performance and improves signature stability.
- Published in:
- BMC Genomics, 2008, v. 9, p. 1, doi. 10.1186/1471-2164-9-375
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- Publication type:
- Article
An integrated approach of gene expression and DNA-methylation profiles of WNT signaling genes uncovers novel prognostic markers in Acute Myeloid Leukemia.
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- BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/1471-2105-16-S4-S4.3d
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- Publication type:
- Article
SPiCE: a web-based tool for sequence-based protein classification and exploration.
- Published in:
- BMC Bioinformatics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2105-15-93
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- Publication type:
- Article
HAT: Hypergeometric Analysis of Tiling-arrays with application to promoter-GeneChip data.
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- BMC Bioinformatics, 2010, v. 11, p. 275, doi. 10.1186/1471-2105-11-275
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- Publication type:
- Article
Delineation of amplification, hybridization andlocation effects in microarray data yieldsbetter-quality normalization.
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- BMC Bioinformatics, 2010, v. 11, p. 156, doi. 10.1186/1471-2105-11-156
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- Publication type:
- Article
Analysis of mass spectrometry data using sub-spectra.
- Published in:
- BMC Bioinformatics, 2009, v. 10, p. 1, doi. 10.1186/1471-2105-10-S1-S51
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- Publication type:
- Article
Knowledge driven decomposition of tumor expression profiles.
- Published in:
- BMC Bioinformatics, 2009, v. 10, p. 1, doi. 10.1186/1471-2105-10-S1-S20
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- Publication type:
- Article
Comparison of normalisation methods for surface-enhanced laser desorption and ionisation (SELDI) time-of-flight (TOF) mass spectrometry data.
- Published in:
- BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-88
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- Publication type:
- Article
SIRAC: Supervised Identification of Regions of Aberration in aCGH datasets.
- Published in:
- BMC Bioinformatics, 2007, v. 8, p. 422, doi. 10.1186/1471-2105-8-422
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- Publication type:
- Article
Gene therapy: Is IL2RG oncogenic in T-cell development?
- Published in:
- Nature, 2006, v. 443, n. 7109, p. E5, doi. 10.1038/nature05218
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- Publication type:
- Article
Gene therapy: Is IL2RG oncogenic in T-cell development?: X-SCID transgene leukaemogenicity (reply).
- Published in:
- Nature, 2006, v. 443, n. 7109, p. E6, doi. 10.1038/nature05220
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- Publication type:
- Article
A transcriptomic based deconvolution framework for assessing differentiation stages and drug responses of AML.
- Published in:
- NPJ Precision Oncology, 2024, v. 8, n. 1, p. 1, doi. 10.1038/s41698-024-00596-9
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- Publication type:
- Article
Transcriptomic signatures of brain regional vulnerability to Parkinson's disease.
- Published in:
- Communications Biology, 2020, v. 3, n. 1, p. 1, doi. 10.1038/s42003-020-0804-9
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- Publication type:
- Article
A framework for employing longitudinally collected multicenter electronic health records to stratify heterogeneous patient populations on disease history.
- Published in:
- 2022
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- Publication type:
- journal article