Works matching AU Reddy, T. B. K.

Results: 59
    1

    The Genome of the Acid Soil-Adapted Strain Rhizobium favelukesii OR191 Encodes Determinants for Effective Symbiotic Interaction With Both an Inverted Repeat Lacking Clade and a Phaseoloid Legume Host.

    Published in:
    Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.735911
    By:
    • Eardly, Bertrand;
    • Meor Osman, Wan Adnawani;
    • Ardley, Julie;
    • Zandberg, Jaco;
    • Gollagher, Margaret;
    • van Berkum, Peter;
    • Elia, Patrick;
    • Marinova, Dora;
    • Seshadri, Rekha;
    • Reddy, T. B. K.;
    • Ivanova, Natalia;
    • Pati, Amrita;
    • Woyke, Tanja;
    • Kyrpides, Nikos;
    • Loedolff, Matthys;
    • Laird, Damian W.;
    • Reeve, Wayne
    Publication type:
    Article
    2

    Novel heavy metal resistance gene clusters are present in the genome of Cupriavidus neocaledonicus STM 6070, a new species of Mimosa pudica microsymbiont isolated from heavy-metal-rich mining site soil.

    Published in:
    BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6623-z
    By:
    • Klonowska, Agnieszka;
    • Moulin, Lionel;
    • Ardley, Julie Kaye;
    • Braun, Florence;
    • Gollagher, Margaret Mary;
    • Zandberg, Jaco Daniel;
    • Marinova, Dora Vasileva;
    • Huntemann, Marcel;
    • Reddy, T. B. K.;
    • Varghese, Neha Jacob;
    • Woyke, Tanja;
    • Ivanova, Natalia;
    • Seshadri, Rekha;
    • Kyrpides, Nikos;
    • Reeve, Wayne Gerald
    Publication type:
    Article
    3

    Author Correction: Microbial Metagenomes Across a Complete Phytoplankton Bloom Cycle: High-Resolution Sampling Every 4 Hours Over 22 Days.

    Published in:
    2025
    By:
    • Nunn, Brook L.;
    • Timmins-Schiffman, Emma;
    • Mudge, Miranda C.;
    • Plubell, Deanna L.;
    • Chebli, Gabriella;
    • Kubanek, Julia;
    • Riffle, Michael;
    • Noble, William S.;
    • Harvey, Elizabeth;
    • Nunn, Tasman A.;
    • Rynearson, Tatiana;
    • Huntemann, Marcel;
    • LaButti, Kurt;
    • Foster, Brian;
    • Foster, Bryce;
    • Roux, Simon;
    • Palaniappan, Krishnaveni;
    • Mukherjee, Supratim;
    • Reddy, T. B. K.;
    • Daum, Chris
    Publication type:
    Correction Notice
    4

    Microbial Metagenomes Across a Complete Phytoplankton Bloom Cycle: High-Resolution Sampling Every 4 Hours Over 22 Days.

    Published in:
    Scientific Data, 2024, v. 11, n. 1, p. 1, doi. 10.1038/s41597-024-04013-5
    By:
    • Nunn, Brook L.;
    • Timmins-Schiffman, Emma;
    • Mudge, Miranda C.;
    • Plubell, Deanna L.;
    • Chebli, Gabriella;
    • Kubanek, Julia;
    • Riffle, Michael;
    • Noble, William S.;
    • Harvey, Elizabeth;
    • Nunn, Tasman A.;
    • Huntemann, Marcel;
    • Clum, Alicia;
    • Foster, Brian;
    • Foster, Bryce;
    • Roux, Simon;
    • Palaniappan, Krishnaveni;
    • Mukherjee, Supratim;
    • Reddy, T. B. K.;
    • Daum, Chris;
    • Copeland, Alex
    Publication type:
    Article
    5
    6

    Coassembly and binning of a twenty-year metagenomic time-series from Lake Mendota.

    Published in:
    Scientific Data, 2024, v. 11, n. 1, p. 1, doi. 10.1038/s41597-024-03826-8
    By:
    • Oliver, Tiffany;
    • Varghese, Neha;
    • Roux, Simon;
    • Schulz, Frederik;
    • Huntemann, Marcel;
    • Clum, Alicia;
    • Foster, Brian;
    • Foster, Bryce;
    • Riley, Robert;
    • LaButti, Kurt;
    • Egan, Robert;
    • Hajek, Patrick;
    • Mukherjee, Supratim;
    • Ovchinnikova, Galina;
    • Reddy, T. B. K.;
    • Calhoun, Sara;
    • Hayes, Richard D.;
    • Rohwer, Robin R.;
    • Zhou, Zhichao;
    • Daum, Chris
    Publication type:
    Article
    7

    Phylogenomics and genetic analysis of solvent-producing Clostridium species.

    Published in:
    Scientific Data, 2024, v. 11, n. 1, p. 1, doi. 10.1038/s41597-024-03210-6
    By:
    • Jensen, Rasmus O.;
    • Schulz, Frederik;
    • Roux, Simon;
    • Klingeman, Dawn M.;
    • Mitchell, Wayne P.;
    • Udwary, Daniel;
    • Moraïs, Sarah;
    • Reynoso, Vinicio;
    • Winkler, James;
    • Nagaraju, Shilpa;
    • De Tissera, Sashini;
    • Shapiro, Nicole;
    • Ivanova, Natalia;
    • Reddy, T. B. K.;
    • Mizrahi, Itzhak;
    • Utturkar, Sagar M.;
    • Bayer, Edward A.;
    • Woyke, Tanja;
    • Mouncey, Nigel J.;
    • Jewett, Michael C.
    Publication type:
    Article
    8

    High-quality draft genome sequence of Ensifer meliloti Mlalz-1, a microsymbiont of Medicago laciniata (L.) miller collected in Lanzarote, Canary Islands, Spain.

    Published in:
    Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0270-2
    By:
    • Meor Osman, Wan Adnawani;
    • van Berkum, Peter;
    • León-Barrios, Milagros;
    • Velázquez, Encarna;
    • Elia, Patrick;
    • Rui Tian;
    • Ardley, Julie;
    • Gollagher, Margaret;
    • Seshadri, Rekha;
    • Reddy, T. B. K.;
    • Ivanova, Natalia;
    • Woyke, Tanja;
    • Pati, Amrita;
    • Markowitz, Victor;
    • Baeshen, Mohamed N.;
    • Nabeeh Baeshen, Naseebh;
    • Kyrpides, Nikos;
    • Reeve, Wayne
    Publication type:
    Article
    9

    High-quality genome sequence of the radioresistant bacterium Deinococcus ficus KS 0460.

    Published in:
    Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0258-y
    By:
    • Matrosova, Vera Y.;
    • Gaidamakova, Elena K.;
    • Makarova, Kira S.;
    • Grichenko, Olga;
    • Klimenkova, Polina;
    • Volpe, Robert P.;
    • Tkavc, Rok;
    • Ertem, Gözen;
    • Conze, Isabel H.;
    • Brambilla, Evelyne;
    • Huntemann, Marcel;
    • Clum, Alicia;
    • Pillay, Manoj;
    • Palaniappan, Krishnaveni;
    • Varghese, Neha;
    • Mikhailova, Natalia;
    • Stamatis, Dimitrios;
    • Reddy, T. B. K.;
    • Daum, Chris;
    • Shapiro, Nicole
    Publication type:
    Article
    10

    High quality permanent draft genome sequence of Chryseobacterium bovis DSM 19482<sup>T</sup>, isolated from raw cow milk.

    Published in:
    Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0242-6
    By:
    • Laviad-Shitrit, Sivan;
    • Göker, Markus;
    • Huntemann, Marcel;
    • Clum, Alicia;
    • Pillay, Manoj;
    • Palaniappan, Krishnaveni;
    • Varghese, Neha;
    • Mikhailova, Natalia;
    • Stamatis, Dimitrios;
    • Reddy, T. B. K.;
    • Daum, Chris;
    • Shapiro, Nicole;
    • Markowitz, Victor;
    • Ivanova, Natalia;
    • Woyke, Tanja;
    • Klenk, Hans-Peter;
    • Kyrpides, Nikos C.;
    • Halpern, Malka
    Publication type:
    Article
    11

    High-quality permanent draft genome sequence of the Bradyrhizobium elkanii type strain USDA 76<sup>T</sup>, isolated from Glycine max (L.) Merr.

    Published in:
    Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0238-2
    By:
    • Reeve, Wayne;
    • van Berkum, Peter;
    • Ardley, Julie;
    • Tian, Rui;
    • Gollagher, Margaret;
    • Marinova, Dora;
    • Elia, Patrick;
    • Reddy, T. B. K.;
    • Pillay, Manoj;
    • Varghese, Neha;
    • Seshadri, Rekha;
    • Ivanova, Natalia;
    • Woyke, Tanja;
    • Baeshen, Mohamed N.;
    • Baeshen, Nabih A.;
    • Kyrpides, Nikos
    Publication type:
    Article
    12

    High-quality-draft genome sequence of the fermenting bacterium Anaerobium acetethylicum type strain GluBS11T (DSM 29698).

    Published in:
    Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0236-4
    By:
    • Patil, Yogita;
    • Müller, Nicolai;
    • Schink, Bernhard;
    • Whitman, William B.;
    • Huntemann, Marcel;
    • Clum, Alicia;
    • Pillay, Manoj;
    • Palaniappan, Krishnaveni;
    • Varghese, Neha;
    • Mikhailova, Natalia;
    • Stamatis, Dimitrios;
    • Reddy, T. B. K.;
    • Daum, Chris;
    • Shapiro, Nicole;
    • Ivanova, Natalia;
    • Kyrpides, Nikos;
    • Woyke, Tanja;
    • Junghare, Madan
    Publication type:
    Article
    13

    Complete genome sequence of Jiangella gansuensis strain YIM 002<sup>T</sup> (DSM 44835<sup>T</sup>), the type species of the genus Jiangella and source of new antibiotic compounds.

    Published in:
    Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0226-6
    By:
    • Jian-Yu Jiao;
    • Carro, Lorena;
    • Lan Liu;
    • Xiao-Yang Gao;
    • Xiao-Tong Zhang;
    • Hozzein, Wael N.;
    • Lapidus, Alla;
    • Huntemann, Marcel;
    • Reddy, T. B. K.;
    • Varghese, Neha;
    • Hadjithomas, Michalis;
    • Ivanova, Natalia N.;
    • Göker, Markus;
    • Pillay, Manoj;
    • Eisen, Jonathan A.;
    • Woyke, Tanja;
    • Klenk, Hans-Peter;
    • Kyrpides, Nikos C.;
    • Wen-Jun Li
    Publication type:
    Article
    14

    High-quality draft genome sequence of Rhizobium mesoamericanum strain STM6155, a Mimosa pudica microsymbiont from New Caledonia.

    Published in:
    Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-016-0212-4
    By:
    • Klonowska, Agnieszka;
    • López-López, Aline;
    • Moulin, Lionel;
    • Ardley, Julie;
    • Gollagher, Margaret;
    • Marinova, Dora;
    • Tian, Rui;
    • Huntemann, Marcel;
    • Reddy, T. B. K.;
    • Varghese, Neha;
    • Woyke, Tanja;
    • Markowitz, Victor;
    • Ivanova, Natalia;
    • Seshadri, Rekha;
    • Baeshen, Mohamed N.;
    • Baeshen, Nabih A.;
    • Kyrpides, Nikos;
    • Reeve, Wayne
    Publication type:
    Article
    15

    Comparing polysaccharide decomposition between the type strains Gramella echinicola KMM 6050<sup>T</sup> (DSM 19838<sup>T</sup>) and Gramella portivictoriae UST040801-001<sup>T</sup> (DSM 23547<sup>T</sup>), and emended description of Gramella echinicola Nedashkovskaya et al. 2005 emend. Shahina et al. 2014 and Gramella portivictoriae Lau et al. 2005

    Published in:
    Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0163-9
    By:
    • Panschin, Irina;
    • Sixing Huang;
    • Meier-Kolthoff, Jan P.;
    • Tindall, Brian J.;
    • Rohde, Manfred;
    • Verbarg, Susanne;
    • Lapidus, Alla;
    • Han, James;
    • Trong, Stephan;
    • Haynes, Matthew;
    • Reddy, T. B. K.;
    • Huntemann, Marcel;
    • Pati, Amrita;
    • Ivanova, Natalia N.;
    • Mavromatis, Konstantinos;
    • Markowitz, Victor;
    • Woyke, Tanja;
    • Göker, Markus;
    • Klenk, Hans-Peter;
    • Kyrpides, Nikos C.
    Publication type:
    Article
    16
    17

    High quality draft genome sequences of Pseudomonas fulva DSM 17717<sup>T</sup>, Pseudomonas parafulva DSM 17004<sup>T</sup> and Pseudomonas cremoricolorata DSM 17059<sup>T</sup> type strains.

    Published in:
    Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0178-2
    By:
    • Peña, Arantxa;
    • Busquets, Antonio;
    • Gomila, Margarita;
    • Mulet, Magdalena;
    • Gomila, Rosa M.;
    • Reddy, T. B. K.;
    • Huntemann, Marcel;
    • Pati, Amrita;
    • Ivanova, Natalia;
    • Markowitz, Victor;
    • García-Valdés, Elena;
    • Göker, Markus;
    • Woyke, Tanja;
    • Klenk, Hans-Peter;
    • Kyrpides, Nikos;
    • Lalucat, Jorge
    Publication type:
    Article
    18

    High-quality permanent draft genome sequence of Ensifer sp. PC2, isolated from a nitrogen-fixing root nodule of the legume tree (Khejri) native to the Thar Desert of India.

    Published in:
    Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0157-7
    By:
    • Gehlot, Hukam Singh;
    • Ardley, Julie;
    • Tak, Nisha;
    • Rui Tian;
    • Poonar, Neetu;
    • Meghwal, Raju R.;
    • Rathi, Sonam;
    • Tiwari, Ravi;
    • Adnawani, Wan;
    • Seshadri, Rekha;
    • Reddy, T. B. K.;
    • Pati, Amrita;
    • Woyke, Tanja;
    • Pillay, Manoj;
    • Markowitz, Victor;
    • Baeshen, Mohammed N.;
    • Al-Hejin, Ahmed M.;
    • Ivanova, Natalia;
    • Kyrpides, Nikos;
    • Reeve, Wayne
    Publication type:
    Article
    19

    High-quality draft genome sequence of Flavobacterium suncheonense GH29-5<sup>T</sup> (DSM 17707<sup>T</sup>) isolated from greenhouse soil in South Korea, and emended description of Flavobacterium suncheonense GH29-5<sup>T</sup>.

    Published in:
    Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0159-5
    By:
    • Tashkandy, Nisreen;
    • Sabban, Sari;
    • Fakieh, Mohammad;
    • Meier-Kolthoff, Jan P.;
    • Sixing Huang;
    • Tindall, Brian J.;
    • Rohde, Manfred;
    • Baeshen, Mohammed N.;
    • Baeshen, Nabih A.;
    • Lapidus, Alla;
    • Copeland, Alex;
    • Pillay, Manoj;
    • Reddy, T. B. K.;
    • Huntemann, Marcel;
    • Pati, Amrita;
    • Ivanova, Natalia;
    • Markowitz, Victor;
    • Woyke, Tanja;
    • Göker, Markus;
    • Klenk, Hans-Peter
    Publication type:
    Article
    20

    High-quality permanent draft genome sequence of the extremely osmotolerant diphenol degrading bacterium Halotalea alkalilenta AW-7<sup>T</sup>, and emended description of the genus Halotalea.

    Published in:
    Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0052-7
    By:
    • Ntougias, Spyridon;
    • Lapidus, Alla;
    • Copeland, Alex;
    • Reddy, T. B. K.;
    • Pati, Amrita;
    • Ivanova, Natalia N.;
    • Markowitz, Victor M.;
    • Klenk, Hans-Peter;
    • Woyke, Tanja;
    • Fasseas, Constantinos;
    • Kyrpides, Nikos C.;
    • Zervakis, Georgios I.
    Publication type:
    Article
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    High quality draft genome sequence of Brachymonas chironomi AIMA4T (DSM 19884<sup>T</sup>) isolated from a Chironomus sp. egg mass.

    Published in:
    Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0010-4
    By:
    • Laviad, Sivan;
    • Lapidus, Alla;
    • Han, James;
    • Haynes, Matthew;
    • Reddy, T. B. K.;
    • Huntemann, Marcel;
    • Pati, Amrita;
    • Ivanova, Natalia N.;
    • Mavromatis, Konstantinos;
    • Lang, Elke;
    • Rohde, Manfred;
    • Markowitz, Victor;
    • Woyke, Tanja;
    • Klenk, Hans-Peter;
    • Kyrpides, Nikos C.;
    • Halpern, Malka
    Publication type:
    Article
    27
    28

    High quality draft genome sequence and analysis of Pontibacter roseus type strain SRC-1<sup>T</sup> (DSM 17521<sup>T</sup>) isolated from muddy waters of a drainage system in Chandigarh, India.

    Published in:
    Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/1944-3277-10-8
    By:
    • Mukherjee, Supratim;
    • Lapidus, Alla;
    • Shapiro, Nicole;
    • Jan-Fang Cheng;
    • Han, James;
    • Reddy, T. B. K.;
    • Huntemann, Marcel;
    • Ivanova, Natalia;
    • Mikhailova, Natalia;
    • Amy Chen;
    • Palaniappan, Krishna;
    • Spring, Stefan;
    • Göker, Markus;
    • Markowitz, Victor;
    • Woyke, Tanja;
    • Tindall, Brian J.;
    • Klenk, Hans-Peter;
    • Kyrpides, Nikos C.;
    • Pati, Amrita
    Publication type:
    Article
    29

    Draft Genome of Burkholderia cenocepacia TAtl-371, a Strain from the Burkholderia cepacia Complex Retains Antagonism in Different Carbon and Nitrogen Sources.

    Published in:
    Current Microbiology, 2019, v. 76, n. 5, p. 566, doi. 10.1007/s00284-019-01657-0
    By:
    • Rojas-Rojas, Fernando Uriel;
    • Sánchez-López, David;
    • Tapia-García, Erika Yanet;
    • Arroyo-Herrera, Ivan;
    • Maymon, Maskit;
    • Humm, Ethan;
    • Huntemann, Marcel;
    • Clum, Alicia;
    • Pillay, Manoj;
    • Palaniappan, Krishnaveni;
    • Varghese, Neha;
    • Mikhailova, Natalia;
    • Stamatis, Dimitrios;
    • Reddy, T. B. K.;
    • Ivanova, Natalia;
    • Kyrpides, Nikos;
    • Woyke, Tanja;
    • Shapiro, Nicole;
    • Hirsch, Ann M.;
    • Ibarra, J. Antonio
    Publication type:
    Article
    30

    A synthesis of bacterial and archaeal phenotypic trait data.

    Published in:
    Scientific Data, 2020, v. 7, n. 1, p. 1, doi. 10.1038/s41597-020-0497-4
    By:
    • Madin, Joshua S.;
    • Nielsen, Daniel A.;
    • Brbic, Maria;
    • Corkrey, Ross;
    • Danko, David;
    • Edwards, Kyle;
    • Engqvist, Martin K. M.;
    • Fierer, Noah;
    • Geoghegan, Jemma L.;
    • Gillings, Michael;
    • Kyrpides, Nikos C.;
    • Litchman, Elena;
    • Mason, Christopher E.;
    • Moore, Lisa;
    • Nielsen, Søren L.;
    • Paulsen, Ian T.;
    • Price, Nathan D.;
    • Reddy, T. B. K.;
    • Richards, Matthew A.;
    • Rocha, Eduardo P. C.
    Publication type:
    Article
    31

    Metagenomes and metatranscriptomes from boreal potential and actual acid sulfate soil materials.

    Published in:
    Scientific Data, 2019, v. 6, n. 1, p. N.PAG, doi. 10.1038/s41597-019-0222-3
    By:
    • Högfors-Rönnholm, Eva;
    • Lopez-Fernandez, Margarita;
    • Christel, Stephan;
    • Brambilla, Diego;
    • Huntemann, Marcel;
    • Clum, Alicia;
    • Foster, Brian;
    • Foster, Bryce;
    • Roux, Simon;
    • Palaniappan, Krishnaveni;
    • Varghese, Neha;
    • Mukherjee, Supratim;
    • Reddy, T. B. K.;
    • Daum, Chris;
    • Copeland, Alex;
    • Chen, I-Min A.;
    • Ivanova, Natalia N.;
    • Kyrpides, Nikos C.;
    • Harmon-Smith, Miranda;
    • Eloe-Fadrosh, Emiley A.
    Publication type:
    Article
    32
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    Microbiomes of Velloziaceae from phosphorus-impoverished soils of the campos rupestres, a biodiversity hotspot.

    Published in:
    Scientific Data, 2019, v. 6, n. 1, p. N.PAG, doi. 10.1038/s41597-019-0141-3
    By:
    • Camargo, Antonio Pedro;
    • de Souza, Rafael Soares Correa;
    • de Britto Costa, Patrícia;
    • Gerhardt, Isabel Rodrigues;
    • Dante, Ricardo Augusto;
    • Teodoro, Grazielle Sales;
    • Abrahão, Anna;
    • Lambers, Hans;
    • Carazzolle, Marcelo Falsarella;
    • Huntemann, Marcel;
    • Clum, Alicia;
    • Foster, Brian;
    • Foster, Bryce;
    • Roux, Simon;
    • Palaniappan, Krishnaveni;
    • Varghese, Neha;
    • Mukherjee, Supratim;
    • Reddy, T. B. K.;
    • Daum, Chris;
    • Copeland, Alex
    Publication type:
    Article
    34

    Microbial metagenomes and metatranscriptomes during a coastal phytoplankton bloom.

    Published in:
    Scientific Data, 2019, v. 6, n. 1, p. N.PAG, doi. 10.1038/s41597-019-0132-4
    By:
    • Nowinski, Brent;
    • Smith, Christa B.;
    • Thomas, Courtney M.;
    • Esson, Kaitlin;
    • Marin, Roman;
    • Preston, Christina M.;
    • Birch, James M.;
    • Scholin, Christopher A.;
    • Huntemann, Marcel;
    • Clum, Alicia;
    • Foster, Brian;
    • Foster, Bryce;
    • Roux, Simon;
    • Palaniappan, Krishnaveni;
    • Varghese, Neha;
    • Mukherjee, Supratim;
    • Reddy, T. B. K.;
    • Daum, Chris;
    • Copeland, Alex;
    • Chen, I.-Min A.
    Publication type:
    Article
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    Draft genome of Paraburkholderia caballeronis TNe-841<sup>T</sup>, a free-living, nitrogen-fixing, tomato plant-associated bacterium.

    Published in:
    Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0294-7
    By:
    • Rojas-Rojas, Fernando Uriel;
    • Tapia-García, Erika Yanet;
    • Maymon, Maskit;
    • Humm, Ethan;
    • Huntemann, Marcel;
    • Clum, Alicia;
    • Pillay, Manoj;
    • Palaniappan, Krishnaveni;
    • Varghese, Neha;
    • Mikhailova, Natalia;
    • Stamatis, Dimitrios;
    • Reddy, T. B. K.;
    • Markowitz, Victor;
    • Ivanova, Natalia;
    • Kyrpides, Nikos;
    • Woyke, Tanja;
    • Shapiro, Nicole;
    • Hirsch, Ann M.;
    • Estrada-de los Santos, Paulina
    Publication type:
    Article
    39

    Draft genome sequence of Marinobacterium rhizophilum CL-YJ9<sup>T</sup> (DSM 18822<sup>T</sup>), isolated from the rhizosphere of the coastal tidal-flat plant Suaeda japonica.

    Published in:
    Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0275-x
    By:
    • Dong Han Choi;
    • Gwang II Jang;
    • Lapidus, Alla;
    • Copeland, Alex;
    • Reddy, T. B. K.;
    • Mukherjee, Supratim;
    • Huntemann, Marcel;
    • Varghese, Neha;
    • Ivanova, Natalia;
    • Pillay, Manoj;
    • Tindall, Brian J.;
    • Göker, Markus;
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    • Klenk, Hans-Peter;
    • Kyrpides, Nikos C.;
    • Byung Cheol Cho
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    40

    Genomes OnLine Database (GOLD) v.10: new features and updates.

    Published in:
    Nucleic Acids Research, 2025, v. 53, n. D1, p. D989, doi. 10.1093/nar/gkae1000
    By:
    • Mukherjee, Supratim;
    • Stamatis, Dimitri;
    • Li, Cindy Tianqing;
    • Ovchinnikova, Galina;
    • Kandimalla, Mahathi;
    • Handke, Van;
    • Reddy, Anuha;
    • Ivanova, Natalia;
    • Woyke, Tanja;
    • Eloe-Fardosh, Emiley A;
    • Chen, I-Min A;
    • Kyrpides, Nikos C;
    • Reddy, T B K
    Publication type:
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    41

    IMG/PR: a database of plasmids from genomes and metagenomes with rich annotations and metadata.

    Published in:
    Nucleic Acids Research, 2024, v. 52, n. D1, p. D164, doi. 10.1093/nar/gkad964
    By:
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    • Ratner, Anna;
    • Chu, Ken;
    • Mukherjeep, Supratim;
    • Reddy, T B K;
    • Chen, I-Min A;
    • Ivanova, Natalia N;
    • Eloe-Fadrosh, Emiley A;
    • Woyke, Tanja;
    • Baltrus, David A;
    • Castañeda-Barba, Salvador;
    • de la Cruz, Fernando;
    • Funnell, Barbara E;
    • Hall, James P J;
    • Mukhopadhyay, Aindrila
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    42

    IMG/M data management and analysis system v.7: content updates and new features.

    Published in:
    Nucleic Acids Research, 2023, v. 51, n. D1, p. D723, doi. 10.1093/nar/gkac976
    By:
    • Chen, I-Min A;
    • Chu, Ken;
    • Palaniappan, Krishnaveni;
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    • Huang, Jinghua;
    • Huntemann, Marcel;
    • Hajek, Patrick;
    • Ritter, Stephan J;
    • Webb, Cody;
    • Wu, Dongying;
    • Varghese, Neha J;
    • Reddy, T B K;
    • Mukherjee, Supratim;
    • Ovchinnikova, Galina;
    • Nolan, Matt;
    • Seshadri, Rekha;
    • Roux, Simon;
    • Visel, Axel;
    • Woyke, Tanja;
    • Eloe-Fadrosh, Emiley A
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    43
    44

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    Published in:
    Nucleic Acids Research, 2023, v. 51, n. D1, p. D733, doi. 10.1093/nar/gkac1037
    By:
    • Camargo, Antonio Pedro;
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    • Palaniappan, Krishnaveni;
    • Ratner, Anna;
    • Chu, Ken;
    • Ritter, Stephan J;
    • Reddy, T B K;
    • Mukherjee, Supratim;
    • Schulz, Frederik;
    • Call, Lee;
    • Neches, Russell Y;
    • Woyke, Tanja;
    • Ivanova, Natalia N;
    • Eloe-Fadrosh, Emiley A;
    • Kyrpides, Nikos C;
    • Roux, Simon
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    45

    Genomes OnLine Database (GOLD) v.8: overview and updates.

    Published in:
    Nucleic Acids Research, 2021, v. 49, n. D1, p. D723, doi. 10.1093/nar/gkaa983
    By:
    • Mukherjee, Supratim;
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    • Bertsch, Jon;
    • Ovchinnikova, Galina;
    • Sundaramurthi, Jagadish Chandrabose;
    • Lee, Janey;
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    • Kyrpides, Nikos C;
    • Reddy, T B K
    Publication type:
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    46
    47

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    Frontiers in Microbiology, 2017, v. 8, p. 1, doi. 10.3389/fmicb.2017.00195
    By:
    • Kublanov, Ilya V.;
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    • Gavrilov, Sergey N.;
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    • Rinke, Christian;
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    • Ivanova, Natalia;
    • Daum, Chris;
    • Reddy, T. B. K.;
    • Klenk, Hans-Peter;
    • Spring, Stefan;
    • Göker, Markus;
    • Reva, Oleg N.;
    • Miroshnichenko, Margarita L.;
    • Kyrpides, Nikos C.;
    • Woyke, Tanja;
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    48

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    By:
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    • Shi, Baochen;
    • Pellegrini, Matteo;
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    • Veliz, Esteban;
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    • Bru, Pierrick;
    • Huntemann, Marcel;
    • Clum, Alicia;
    • Palaniappan, Krishnaveni;
    • Varghese, Neha;
    • Mukherjee, Supratim;
    • Reddy, T. B. K.;
    • Daum, Chris;
    • Ivanova, Natalia N.;
    • Kyrpides, Nikos C.;
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    • Eloe-Fadrosh, Emiley A.
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    49
    50

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    Nucleic Acids Research, 2017, v. 45, n. D1, p. D457, doi. 10.1093/nar/gkw1030
    By:
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    • Szeto, Ernest;
    • Pillay, Manoj;
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    • Nielsen, Torben;
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    • Pavlopoulos, Georgios A.;
    • Sullivan, Matthew B.;
    • Campbell, Barbara J.;
    • Feng Chen;
    • McMahon, Katherine;
    • Hallam, Steve J.;
    • Denef, Vincent;
    • Cavicchioli, Ricardo
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