Works by Rajagopal, Vijay

Results: 13

A Semi-Automated Workflow for Segmenting Contents of Single Cardiac Cells from Serial-Block-Face Scanning Electron Microscopy Data.

Published in:

Microscopy & Microanalysis, 2017, v. 23, p. 240, doi. 10.1017/S143192761700188X

By:

Hussain, Akter;
Hanssen., Eric;
Rajagopal, Vijay

Publication type:

Article

BondGraphs.jl: composable energy-based modelling in systems biology.

Published in:

Bioinformatics, 2023, v. 39, n. 10, p. 1, doi. 10.1093/bioinformatics/btad578

By:

Forrest, Joshua;
Rajagopal, Vijay;
Stumpf, Michael P H;
Pan, Michael

Publication type:

Article

EM-stellar: benchmarking deep learning for electron microscopy image segmentation.

Published in:

Bioinformatics, 2021, v. 37, n. 1, p. 97, doi. 10.1093/bioinformatics/btaa1094

By:

Khadangi, Afshin;
Boudier, Thomas;
Rajagopal, Vijay

Publication type:

Article

Role of actin filaments and cis binding in cadherin clustering and patterning.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 7, p. 1, doi. 10.1371/journal.pcbi.1010257

By:

Yu, Qilin;
Kim, Taeyoon;
Rajagopal, Vijay

Publication type:

Article

Examination of the Effects of Heterogeneous Organization of RyR Clusters, Myofibrils and Mitochondria on Ca<sup>2+</sup> Release Patterns in Cardiomyocytes.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 9, p. 1, doi. 10.1371/journal.pcbi.1004417

By:

Rajagopal, Vijay;
Bass, Gregory;
Walker, Cameron G.;
Crossman, David J.;
Petzer, Amorita;
Hickey, Anthony;
Siekmann, Ivo;
Hoshijima, Masahiko;
Ellisman, Mark H.;
Crampin, Edmund J.;
Soeller, Christian

Publication type:

Article

Surface area‐to‐volume ratio, not cellular viscoelasticity, is the major determinant of red blood cell traversal through small channels.

Published in:

Cellular Microbiology, 2021, v. 23, n. 1, p. 1, doi. 10.1111/cmi.13270

By:

Namvar, Arman;
Blanch, Adam J.;
Dixon, Matthew W.;
Carmo, Olivia M. S.;
Liu, Boyin;
Tiash, Snigdha;
Looker, Oliver;
Andrew, Dean;
Chan, Li‐Jin;
Tham, Wai‐Hong;
Lee, Peter V. S.;
Rajagopal, Vijay;
Tilley, Leann

Publication type:

Article

Multimodal analysis of Plasmodium knowlesi‐infected erythrocytes reveals large invaginations, swelling of the host cell, and rheological defects.

Published in:

Cellular Microbiology, 2019, v. 21, n. 5, p. N.PAG, doi. 10.1111/cmi.13005

By:

Liu, Boyin;
Blanch, Adam J.;
Namvar, Arman;
Carmo, Olivia;
Tiash, Snigdha;
Andrew, Dean;
Hanssen, Eric;
Rajagopal, Vijay;
Dixon, Matthew W.A.;
Tilley, Leann

Publication type:

Article

Assessing Cardiomyocyte Excitation-Contraction Coupling Site Detection From Live Cell Imaging Using a Structurally-Realistic Computational Model of Calcium Release.

Published in:

Frontiers in Physiology, 2019, p. 1, doi. 10.3389/fphys.2019.01263

By:

Ladd, David;
Tilūnaitė, Agnė;
Roderick, H. Llewelyn;
Soeller, Christian;
Crampin, Edmund J.;
Rajagopal, Vijay

Publication type:

Article

EGFRvIII Promotes Cell Survival during Endoplasmic Reticulum Stress through a Reticulocalbin 1-Dependent Mechanism.

Published in:

Cancers, 2021, v. 13, n. 6, p. 1198, doi. 10.3390/cancers13061198

By:

Gomez, Juliana;
Areeb, Zammam;
Stuart, Sarah F.;
Nguyen, Hong P. T.;
Paradiso, Lucia;
Zulkifli, Ahmad;
Madan, Sonakshi;
Rajagopal, Vijay;
Montgomery, Magdalene K.;
Gan, Hui K.;
Scott, Andrew M.;
Jones, Jordan;
Kaye, Andrew H.;
Morokoff, Andrew P.;
Luwor, Rodney B.;
Ueno, Naoto T.

Publication type:

Article

Insights on the impact of mitochondrial organisation on bioenergetics in high-resolution computational models of cardiac cell architecture.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 12, p. 1, doi. 10.1371/journal.pcbi.1006640

By:

Ghosh, Shouryadipta;
Tran, Kenneth;
Delbridge, Lea M. D.;
Hickey, Anthony J. R.;
Hanssen, Eric;
Crampin, Edmund J.;
Rajagopal, Vijay

Publication type:

Article

Automated segmentation of cardiomyocyte Z-disks from high-throughput scanning electron microscopy data.

Published in:

2019

By:

Khadangi, Afshin;
Hanssen, Eric;
Rajagopal, Vijay

Publication type:

journal article

Assessment of single beat end-systolic elastance methods for quantifying ventricular contractility.

Published in:

Heart & Vessels, 2019, v. 34, n. 4, p. 716, doi. 10.1007/s00380-018-1303-5

By:

Wo, Naomi;
Rajagopal, Vijay;
Cheung, Michael M. H.;
Smolich, Joseph J.;
Mynard, Jonathan P.

Publication type:

Article

Genome-wide identification of replication fork stalling/pausing sites and the interplay between RNA Pol II transcription and DNA replication progression.

Published in:

Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-024-03278-8

By:

Rojas, Patricia;
Wang, Jianming;
Guglielmi, Giovanni;
Sadurnì, Martina Mustè;
Pavlou, Lucas;
Leung, Geoffrey Ho Duen;
Rajagopal, Vijay;
Spill, Fabian;
Saponaro, Marco

Publication type:

Article