Works by Raine, Amanda

Results: 25

A multiomic characterization of the leukemia cell line REH using short- and long-read sequencing.

Published in:

Life Science Alliance, 2024, v. 7, n. 8, p. 1, doi. 10.26508/lsa.202302481

By:

Wiklander, Mariya Lysenkova;
Arvidsson, Gustav;
Bunikis, Ignas;
Lundmark, Anders;
Raine, Amanda;
Marincevic-Zuniga, Yanara;
Gezelius, Henrik;
Bremer, Anna;
Feuk, Lars;
Ameur, Adam;
Nordlund, Jessica

Publication type:

Article

PB1709: A COMPLETE DIGITAL KARYOTYPE OF THE B-CELL LEUKEMIA REH CELL LINE RESOLVED BY LONG-READ SEQUENCING.

Published in:

2023

By:

Wiklander, Mariya Lysenkova;
Arvidsson, Gustav;
Bunikis, Ignas;
Lundmark, Anders;
Raine, Amanda;
Marincevic-Zuniga, Yanara;
Gezelius, Henrik;
Bremer, Anna;
Feuk, Lars;
Ameur, Adam;
Nordlund, Jessica

Publication type:

Abstract

Quantitative Transcriptome Analysis of Purified Equine Mast Cells Identifies a Dominant Mucosal Mast Cell Population with Possible Inflammatory Functions in Airways of Asthmatic Horses.

Published in:

International Journal of Molecular Sciences, 2022, v. 23, n. 22, p. 13976, doi. 10.3390/ijms232213976

By:

Akula, Srinivas;
Riihimäki, Miia;
Waern, Ida;
Åbrink, Magnus;
Raine, Amanda;
Hellman, Lars;
Wernersson, Sara

Publication type:

Article

Interplay of signal recognition particle and trigger factor at L23 near the nascent chain exit site on the Escherichia coli ribosome.

Published in:

Journal of Cell Biology, 2003, v. 161, n. 4, p. 679, doi. 10.1083/jcb.200302130

By:

Ullers, Ronald S.;
Houben, Edith N.G.;
Raine, Amanda;
ten Hagen-Jongman, Corinne M.;
Ehrenberg, Måns;
Brunner, Joseph;
Oudega, Bauke;
Harms, Nellie;
Luirink, Joen

Publication type:

Article

Multimodal Single-Cell Sequencing of B Cells in Primary Sjögren’s Syndrome.

Published in:

Arthritis & Rheumatology, 2024, v. 76, n. 2, p. 255, doi. 10.1002/art.42683

By:

Arvidsson, Gustav;
Czarnewski, Paulo;
Johansson, Alina;
Raine, Amanda;
Imgenberg-Kreuz, Juliana;
Nordlund, Jessica;
Nordmark, Gunnel;
Syvänen, Ann-Christine

Publication type:

Article

Long term orexigenic effect of a novel melanocortin 4 receptor selective antagonist.

Published in:

1999

By:

Skuladottir, Gudrun V;
Jonsson, Logi;
Skarphedinsson, Jon O;
Mutulis, Felikss;
Muceniece, Ruta;
Raine, Amanda;
Mutule, Ilze;
Helgason, Johannes;
Prusis, Peteris;
Wikberg, Jarl E S;
Schiöth, Helgi B;
Skuladottir, G V;
Jonsson, L;
Skarphedinsson, J O;
Mutulis, F;
Muceniece, R;
Raine, A;
Mutule, I;
Helgason, J;
Prusis, P

Publication type:

journal article

Data quality of whole genome bisulfite sequencing on Illumina platforms.

Published in:

PLoS ONE, 2018, v. 13, n. 4, p. 1, doi. 10.1371/journal.pone.0195972

By:

Raine, Amanda;
Liljedahl, Ulrika;
Nordlund, Jessica

Publication type:

Article

Epithelial expression of mRNA and protein for IL-6, IL-10 and TNF-α in endobronchial biopsies in horses with recurrent airway obstruction.

Published in:

BMC Veterinary Research, 2008, v. 4, p. 1, doi. 10.1186/1746-6148-4-8

By:

Riihimäki, Miia;
Raine, Amanda;
Pourazar, Jamshid;
Sandström, Thomas;
Art, Tatiana;
Lekeux, Pierre;
Couëtil, Laurent;
Pringle, John

Publication type:

Article

Refined detection and phasing of structural aberrations in pediatric acute lymphoblastic leukemia by linked-read whole-genome sequencing.

Published in:

Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-59214-w

By:

Nordlund, Jessica;
Marincevic-Zuniga, Yanara;
Cavelier, Lucia;
Raine, Amanda;
Martin, Tom;
Lundmark, Anders;
Abrahamsson, Jonas;
Norén-Nyström, Ulrika;
Lönnerholm, Gudmar;
Syvänen, Ann-Christine

Publication type:

Article

Exploring a pico-well based scRNA-seq method (HIVE) for simplified processing of equine bronchoalveolar lavage cells.

Published in:

PLoS ONE, 2025, v. 20, n. 1, p. 1, doi. 10.1371/journal.pone.0317343

By:

Fegraeus, Kim;
Riihimäki, Miia;
Nordlund, Jessica;
Akula, Srinivas;
Wernersson, Sara;
Raine, Amanda

Publication type:

Article

H-NS-mediated repression of CRISPR-based immunity in Escherichia coli K12 can be relieved by the transcription activator LeuO.

Published in:

Molecular Microbiology, 2010, v. 77, n. 6, p. 1380, doi. 10.1111/j.1365-2958.2010.07315.x

By:

Westra, Edze R.;
Pul, Ümit;
Heidrich, Nadja;
Jore, Matthijs M.;
Lundgren, Magnus;
Stratmann, Thomas;
Wurm, Reinhild;
Raine, Amanda;
Mescher, Melina;
Heereveld, Luc van;
Mastop, Marieke;
Wagner, E. Gerhart H.;
Schnetz, Karin;
Van der Oost, John;
Wagner, Rolf;
Brouns, Stan J. J.

Publication type:

Article

Genomic, transcriptomic and epigenomic sequencing data of the B-cell leukemia cell line REH.

Published in:

BMC Research Notes, 2023, v. 16, n. 1, p. 1, doi. 10.1186/s13104-023-06537-2

By:

Lysenkova Wiklander, Mariya;
Övernäs, Elin;
Lagensjö, Johanna;
Raine, Amanda;
Petri, Anna;
Wiman, Ann-Christin;
Ramsell, Jon;
Marincevic-Zuniga, Yanara;
Gezelius, Henrik;
Martin, Tom;
Bunikis, Ignas;
Ekberg, Sara;
Erlandsson, Rikard;
Larsson, Pontus;
Mosbech, Mai-Britt;
Häggqvist, Susana;
Hellstedt Kerje, Susanne;
Feuk, Lars;
Ameur, Adam;
Liljedahl, Ulrika

Publication type:

Article

Installation of mechanical ventilation in a horse stable: effects on air quality and human and equine airways.

Published in:

Environmental Health & Preventive Medicine, 2011, v. 16, n. 4, p. 264, doi. 10.1007/s12199-010-0195-5

By:

Wålinder, Robert;
Riihimäki, Miia;
Bohlin, Susanne;
Hogstedt, Carl;
Nordquist, Tobias;
Raine, Amanda;
Pringle, John;
Elfman, Lena

Publication type:

Article

Histological characterization of orphan transporter MCT14 (SLC16A14) shows abundant expression in mouse CNS and kidney.

Published in:

2016

By:

Roshanbin, Sahar;
Lindberg, Frida A.;
Lekholm, Emilia;
Eriksson, Mikaela M.;
Perland, Emelie;
Åhlund, Johan;
Raine, Amanda;
Fredriksson, Robert

Publication type:

journal article

Single nucleus transcriptomics data integration recapitulates the major cell types in human liver.

Published in:

Hepatology Research, 2021, v. 51, n. 2, p. 233, doi. 10.1111/hepr.13585

By:

Diamanti, Klev;
Inda Díaz, Juan Salvador;
Raine, Amanda;
Pan, Gang;
Wadelius, Claes;
Cavalli, Marco

Publication type:

Article

Single-cell transcriptomics delineates the immune cell landscape in equine lower airways and reveals upregulation of FKBP5 in horses with asthma.

Published in:

Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-43368-4

By:

Riihimäki, Miia;
Fegraeus, Kim;
Nordlund, Jessica;
Waern, Ida;
Wernersson, Sara;
Akula, Srinivas;
Hellman, Lars;
Raine, Amanda

Publication type:

Article

SPlinted Ligation Adapter Tagging (SPLAT), a novel library preparation method for whole genome bisulphite sequencing.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 6, p. 1, doi. 10.1093/nar/gkw1110

By:

Raine, Amanda;
Manlig, Erika;
Wahlberg, Per;
Syvänen, Ann-Christine;
Nordlund, Jessica

Publication type:

Article

Markers of respiratory inflammation in horses in relation to seasonal changes in air quality in a conventional racing stable.

Published in:

Canadian Journal of Veterinary Research / Revue Canadienne de Recherche Vétérinaire, 2008, v. 72, n. 5, p. 432

By:

Riihimäki, Miia;
Raine, Amanda;
Elfman, Lena;
Pringle, John

Publication type:

Article

Comparison of high-throughput single-cell RNA-seq methods for ex vivo drug screening.

Published in:

NAR Genomics & Bioinformatics, 2024, v. 6, n. 1, p. 1, doi. 10.1093/nargab/lqae001

By:

Gezelius, Henrik;
Enblad, Anna Pia;
Lundmark, Anders;
Åberg, Martin;
Blom, Kristin;
Rudfeldt, Jakob;
Raine, Amanda;
Harila, Arja;
Rendo, Verónica;
Heinäniemi, Merja;
Andersson, Claes;
Nordlund, Jessica

Publication type:

Article

An endothelial regulatory module links blood pressure regulation with elite athletic performance.

Published in:

PLoS Genetics, 2024, v. 20, n. 6, p. 1, doi. 10.1371/journal.pgen.1011285

By:

Fegraeus, Kim;
Rosengren, Maria K.;
Naboulsi, Rakan;
Orlando, Ludovic;
Åbrink, Magnus;
Jouni, Ahmad;
Velie, Brandon D.;
Raine, Amanda;
Egner, Beate;
Mattsson, C Mikael;
Lång, Karin;
Zhigulev, Artemy;
Björck, Hanna M.;
Franco-Cereceda, Anders;
Eriksson, Per;
Andersson, Göran;
Sahlén, Pelin;
Meadows, Jennifer R. S.;
Lindgren, Gabriella

Publication type:

Article

scSPLAT, a scalable plate-based protocol for single cell WGBS library preparation.

Published in:

Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-09798-2

By:

Raine, Amanda;
Lundmark, Anders;
Annett, Alva;
Wiman, Ann-Christin;
Cavalli, Marco;
Wadelius, Claes;
Bergin, Claudia;
Nordlund, Jessica

Publication type:

Article

Leukocytes with chromosome Y loss have reduced abundance of the cell surface immunoprotein CD99.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-94588-5

By:

Mattisson, Jonas;
Danielsson, Marcus;
Hammond, Maria;
Davies, Hanna;
Gallant, Caroline J.;
Nordlund, Jessica;
Raine, Amanda;
Edén, Malin;
Kilander, Lena;
Ingelsson, Martin;
Dumanski, Jan P.;
Halvardson, Jonatan;
Forsberg, Lars A.

Publication type:

Article

Transcriptome sequencing in pediatric acute lymphoblastic leukemia identifies fusion genes associated with distinct DNA methylation profiles.

Published in:

Journal of Hematology & Oncology, 2017, v. 10, p. 1, doi. 10.1186/s13045-017-0515-y

By:

Marincevic-Zuniga, Yanara;
Dahlberg, Johan;
Nilsson, Sara;
Raine, Amanda;
Nystedt, Sara;
Lindqvist, Carl Mårten;
Berglund, Eva C.;
Abrahamsson, Jonas;
Cavelier, Lucia;
Forestier, Erik;
Heyman, Mats;
Lönnerholm, Gudmar;
Nordlund, Jessica;
Syvänen, Ann-Christine

Publication type:

Article

The Mutational Landscape in Pediatric Acute Lymphoblastic Leukemia Deciphered by Whole Genome Sequencing.

Published in:

Human Mutation, 2015, v. 36, n. 1, p. 118, doi. 10.1002/humu.22719

By:

Lindqvist, Carl Mårten;
Nordlund, Jessica;
Ekman, Diana;
Johansson, Anna;
Moghadam, Behrooz Torabi;
Raine, Amanda;
Övernäs, Elin;
Dahlberg, Johan;
Wahlberg, Per;
Henriksson, Niklas;
Abrahamsson, Jonas;
Frost, Britt‐Marie;
Grandér, Dan;
Heyman, Mats;
Larsson, Rolf;
Palle, Josefine;
Söderhäll, Stefan;
Forestier, Erik;
Lönnerholm, Gudmar;
Syvänen, Ann‐Christine

Publication type:

Article

Comparison of EM-seq and PBAT methylome library methods for low-input DNA.

Published in:

Epigenetics, 2022, v. 17, n. 10, p. 1195, doi. 10.1080/15592294.2021.1997406

By:

Han, Yanan;
Zheleznyakova, Galina Yurevna;
Marincevic-Zuniga, Yanara;
Kakhki, Majid Pahlevan;
Raine, Amanda;
Needhamsen, Maria;
Jagodic, Maja

Publication type:

Article