Works by Rahmann, Sven
Results: 78
Non-symmetric score matrices and the detection of homologous transmembrane proteins.
- Published in:
- Bioinformatics, 2001, v. 17, p. 182, doi. 10.1093/bioinformatics/17.suppl_1.s182
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- Publication type:
- Article
Interaction-Specific Changes in the Transcriptome of Polynucleobacter asymbioticus Caused by Varying Protistan Communities.
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- Frontiers in Microbiology, 2019, p. 1, doi. 10.3389/fmicb.2019.01498
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- Publication type:
- Article
Reliable transfer of transcriptional gene regulatory networks between taxonomically related organisms.
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- BMC Systems Biology, 2009, v. 3, p. 1, doi. 10.1186/1752-0509-3-8
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- Publication type:
- Article
CoryneCenter -- An online resource for the integrated analysis ofcorynebacterial genome and transcriptome data.
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- BMC Systems Biology, 2007, v. 1, p. 55, doi. 10.1186/1752-0509-1-55
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- Article
Partitioning biological data with transitivity clustering.
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- 2010
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- Publication type:
- Letter
TaxMapper: an analysis tool, reference database and workflow for metatranscriptome analysis of eukaryotic microorganisms.
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- BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-4168-6
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- Publication type:
- Article
A modular computational framework for automated peak extraction from ion mobility spectra.
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- BMC Bioinformatics, 2014, v. 15, n. 1, p. 2, doi. 10.1186/1471-2105-15-25
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- Article
Discovering motifs that induce sequencing errors.
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- BMC Bioinformatics, 2013, v. 14, n. Suppl 5, p. 1, doi. 10.1186/1471-2105-14-S5-S1
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- Article
Accurate statistics for local sequence alignment with position-dependent scoring by rare-event sampling.
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- BMC Bioinformatics, 2011, v. 12, n. 1, p. 47, doi. 10.1186/1471-2105-12-47
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- Article
HMM Logos for visualization of protein families.
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- BMC Bioinformatics, 2004, v. 5, p. 7
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- Article
Functional and phylogenetic analysis of the core transcriptome of Ochromonadales.
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- Metabarcoding & Metagenomics, 2017, n. 1, p. 1, doi. 10.3897/mbmg.1.19862
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- Article
EpiSegMix: a flexible distribution hidden Markov model with duration modeling for chromatin state discovery.
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- Bioinformatics, 2024, v. 40, n. 4, p. 1, doi. 10.1093/bioinformatics/btae178
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- Article
Rapid T-cell receptor interaction grouping with ting.
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- Bioinformatics, 2021, v. 37, n. 20, p. 3444, doi. 10.1093/bioinformatics/btab361
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- Publication type:
- Article
GAMIBHEAR: whole-genome haplotype reconstruction from Genome Architecture Mapping data.
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- Bioinformatics, 2021, v. 37, n. 19, p. 3128, doi. 10.1093/bioinformatics/btab238
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- Publication type:
- Article
Detecting high-scoring local alignments in pangenome graphs.
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- Bioinformatics, 2021, v. 37, n. 16, p. 2266, doi. 10.1093/bioinformatics/btab077
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- Article
Snakemake—a scalable bioinformatics workflow engine.
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- 2018
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- Correction Notice
SimLoRD: Simulation of Long Read Data.
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- Bioinformatics, 2016, v. 32, n. 17, p. 2704, doi. 10.1093/bioinformatics/btw286
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- Publication type:
- Article
Massive parallel bisulfite sequencing of CG-rich DNA fragments reveals that methylation of many X-chromosomal CpG islands in female blood DNA is incomplete.
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- Human Molecular Genetics, 2009, v. 18, n. 8, p. 1439, doi. 10.1093/hmg/ddp054
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- Publication type:
- Article
BETTER GENECHIP MICROARRAY LAYOUTS BY COMBINING PROBE PLACEMENT AND EMBEDDING.
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- Journal of Bioinformatics & Computational Biology, 2008, v. 6, n. 3, p. 623, doi. 10.1142/S0219720008003576
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- Publication type:
- Article
FAST LARGE SCALE OLIGONUCLEOTIDE SELECTION USING THE LONGEST COMMON FACTOR APPROACH.
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- Journal of Bioinformatics & Computational Biology, 2003, v. 1, n. 2, p. 343, doi. 10.1142/S0219720003000125
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- Publication type:
- Article
Non-responsiveness to cardioprotection by ischaemic preconditioning in Ossabaw minipigs with genetic predisposition to, but without the phenotype of the metabolic syndrome.
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- Basic Research in Cardiology, 2022, v. 117, n. 1, p. 1, doi. 10.1007/s00395-022-00965-0
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- Article
Author Correction: A MYCN-driven de-differentiation profile identifies a subgroup of aggressive retinoblastoma.
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- 2024
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- Correction Notice
A MYCN-driven de-differentiation profile identifies a subgroup of aggressive retinoblastoma.
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- Communications Biology, 2024, v. 7, n. 1, p. 1, doi. 10.1038/s42003-024-06596-6
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- Article
Modeling and simulating networks of interdependent protein interactions.
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- Integrative Biology, 2018, v. 10, n. 5, p. 290, doi. 10.1039/c8ib00012c
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- Article
Efficiently mining protein interaction dependencies from large text corpora.
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- Integrative Biology, 2012, v. 4, n. 7, p. 805, doi. 10.1039/c2ib00126h
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- Article
N6-Adenosine Methylation in MiRNAs.
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- PLoS ONE, 2015, v. 10, n. 2, p. 1, doi. 10.1371/journal.pone.0118438
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- Publication type:
- Article
NGS Detects Extensive Genomic Alterations in Survivors of Irradiated Normal Human Fibroblast Cells.
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- Radiation Research, 2025, v. 203, n. 1, p. 37, doi. 10.1667/RADE-24-00094.1
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- Article
Accurate and robust phylogeny estimation based on profile distances: a study of the Chlorophyceae (Chlorophyta).
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- BMC Evolutionary Biology, 2004, v. 4, p. 20, doi. 10.1186/1471-2148-4-20
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- Article
Cancer evolution, mutations, and clonal selection in relapse neuroblastoma.
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- Cell & Tissue Research, 2018, v. 372, n. 2, p. 263, doi. 10.1007/s00441-018-2810-5
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- Article
Towards the integrated analysis, visualization and reconstruction of microbial gene regulatory networks.
- Published in:
- Briefings in Bioinformatics, 2009, v. 10, n. 1, p. 75, doi. 10.1093/bib/bbn055
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- Publication type:
- Article
Pancreatic cancer acquires resistance to MAPK pathway inhibition by clonal expansion and adaptive DNA hypermethylation.
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- Clinical Epigenetics, 2024, v. 16, n. 1, p. 1, doi. 10.1186/s13148-024-01623-z
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- Publication type:
- Article
High-throughput microarray technology in diagnostics of enterobacteria based on genome-wide probe selection and regression analysis.
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- BMC Genomics, 2010, v. 11, n. 1, p. 1, doi. 10.1186/1471-2164-11-591
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- Publication type:
- Article
High-throughput microarray technology in diagnostics of enterobacteria based on genomewide probe selection and regression analysis.
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- BMC Genomics, 2010, v. 11, p. 591, doi. 10.1186/1471-2164-11-591
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- Publication type:
- Article
CoryneRegNet: An ontology-based data warehouse of corynebacterial transcription factors and regulatory networks.
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- BMC Genomics, 2006, v. 7, p. 24, doi. 10.1186/1471-2164-7-24
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- Publication type:
- Article
CDKN2A deletion in supratentorial ependymoma with RELA alteration indicates a dismal prognosis: a retrospective analysis of the HIT ependymoma trial cohort.
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- Acta Neuropathologica, 2020, v. 140, n. 3, p. 405, doi. 10.1007/s00401-020-02169-z
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- Publication type:
- Article
Supratentorial ependymomas of childhood carry C11orf95- RELA fusions leading to pathological activation of the NF-κB signaling pathway.
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- 2014
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- Publication type:
- Letter
A germ cell‐specific ageing pattern in otherwise healthy men.
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- Aging Cell, 2020, v. 19, n. 10, p. 1, doi. 10.1111/acel.13242
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- Article
Improved risk-stratification for posterior fossa ependymoma of childhood considering clinical, histological and genetic features – a retrospective analysis of the HIT ependymoma trial cohort.
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- Acta Neuropathologica Communications, 2019, v. 7, n. 1, p. N.PAG, doi. 10.1186/s40478-019-0820-5
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- Article
The Role of Pre-existing Cross-Reactive Central Memory CD4 T-Cells in Vaccination With Previously Unseen Influenza Strains.
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- Frontiers in Immunology, 2019, p. N.PAG, doi. 10.3389/fimmu.2019.00593
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- Publication type:
- Article
A detailed comparison of analysis processes for MCC-IMS data in disease classification—Automated methods can replace manual peak annotations.
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- PLoS ONE, 2017, v. 12, n. 9, p. 1, doi. 10.1371/journal.pone.0184321
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- Publication type:
- Article
Quantitative Proteomics Reveals Ecophysiological Effects of Light and Silver Stress on the Mixotrophic Protist Poterioochromonas malhamensis.
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- PLoS ONE, 2017, v. 12, n. 1, p. 1, doi. 10.1371/journal.pone.0168183
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- Publication type:
- Article
Human TLR8 senses UR/URR motifs in bacterial and mitochondrial RNA.
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- EMBO Reports, 2015, v. 16, n. 12, p. 1656, doi. 10.15252/embr.201540861
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- Article
T-Reg Comparator: an analysis tool for the comparison of position weight matrices.
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- Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w438, doi. 10.1093/nar/gki590
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- Publication type:
- Article
Recurrent alterations of TNFAIP 3 ( A20) in T-cell large granular lymphocytic leukemia.
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- International Journal of Cancer, 2016, v. 138, n. 1, p. 121, doi. 10.1002/ijc.29697
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- Publication type:
- Article
Next-generation RNA sequencing reveals differential expression of MYCN target genes and suggests the mTOR pathway as a promising therapy target in MYCN-amplified neuroblastoma.
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- International Journal of Cancer, 2013, v. 132, n. 3, p. E106, doi. 10.1002/ijc.27787
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- Publication type:
- Article
ddrage: A data set generator to evaluate ddRADseq analysis software.
- Published in:
- Molecular Ecology Resources, 2018, v. 18, n. 3, p. 681, doi. 10.1111/1755-0998.12743
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- Publication type:
- Article
Modelling cross-hybridization on phylogenetic DNA microarrays increases the detection power of closely related species.
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- Molecular Ecology Resources, 2009, v. 9, n. 1, p. 83, doi. 10.1111/j.1755-0998.2008.02199.x
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- Publication type:
- Article
Oto-facial syndrome and esophageal atresia, intellectual disability and zygomatic anomalies - expanding the phenotypes associated with EFTUD2 mutations.
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- Orphanet Journal of Rare Diseases, 2013, v. 8, n. 1, p. 1, doi. 10.1186/1750-1172-8-110
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- Article
Oto-facial syndrome and esophageal atresia, intellectual disability and zygomatic anomalies - expanding the phenotypes associated with EFTUD2 mutations.
- Published in:
- 2013
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- Publication type:
- journal article
Mutational dynamics between primary and relapse neuroblastomas.
- Published in:
- Nature Genetics, 2015, v. 47, n. 8, p. 872, doi. 10.1038/ng.3349
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- Publication type:
- Article