Works by Raghwani, Jayna

Results: 24

Molecular epidemiology and pathogenicity of H5N1 and H9N2 avian influenza viruses in clinically affected chickens on farms in Bangladesh.

Published in:

Emerging Microbes & Infections, 2021, v. 10, n. 1, p. 2223, doi. 10.1080/22221751.2021.2004865

By:

Ripa, Ripatun Nahar;
Sealy, Joshua E.;
Raghwani, Jayna;
Das, Tridip;
Barua, Himel;
Masuduzzaman, Md.;
Saifuddin, A. K. M.;
Huq, Md. Reajul;
Uddin, Mohammad Inkeyas;
Iqbal, Munir;
Brown, Ian;
Lewis, Nicola S.;
Pfeiffer, Dirk;
Fournie, Guillaume;
Biswas, Paritosh Kumar

Publication type:

Article

Discovery of a Novel Coronavirus in Swedish Bank Voles (Myodes glareolus).

Published in:

Viruses (1999-4915), 2022, v. 14, n. 6, p. N.PAG, doi. 10.3390/v14061205

By:

Wasberg, Anishia;
Raghwani, Jayna;
Li, Jinlin;
Pettersson, John H.-O.;
Lindahl, Johanna F.;
Lundkvist, Åke;
Ling, Jiaxin

Publication type:

Article

Seasonal dynamics of the wild rodent faecal virome.

Published in:

Molecular Ecology, 2023, v. 32, n. 17, p. 4763, doi. 10.1111/mec.16778

By:

Raghwani, Jayna;
Faust, Christina L.;
François, Sarah;
Nguyen, Dung;
Marsh, Kirsty;
Raulo, Aura;
Hill, Sarah C.;
Parag, Kris V.;
Simmonds, Peter;
Knowles, Sarah C. L.;
Pybus, Oliver G.

Publication type:

Article

Venue-Based Networks May Underpin HCV Transmissions amongst HIV-Infected Gay and Bisexual Men.

Published in:

PLoS ONE, 2016, v. 11, n. 9, p. 1, doi. 10.1371/journal.pone.0162002

By:

Bradshaw, Daniel;
Raghwani, Jayna;
Jacka, Brendan;
Sacks-Davis, Rachel;
Lamoury, Francois;
Down, Ian;
Prestage, Garrett;
Applegate, Tanya L.;
Hellard, Margaret;
Sasadeusz, Joe;
Dore, Gregory J.;
Pybus, Oliver G.;
Matthews, Gail V.;
Danta, Mark

Publication type:

Article

Evolution of HIV-1 within untreated individuals and at the population scale in Uganda.

Published in:

PLoS Pathogens, 2018, v. 14, n. 7, p. 1, doi. 10.1371/journal.ppat.1007167

By:

Raghwani, Jayna;
Redd, Andrew D.;
Longosz, Andrew F.;
Wu, Chieh-Hsi;
Serwadda, David;
Martens, Craig;
Kagaayi, Joseph;
Sewankambo, Nelson;
Porcella, Stephen F.;
Grabowski, Mary K.;
Quinn, Thomas C.;
Eller, Michael A.;
Eller, Leigh Anne;
Wabwire-Mangen, Fred;
Robb, Merlin L.;
Fraser, Christophe;
Lythgoe, Katrina A.

Publication type:

Article

Genome-wide evolutionary dynamics of influenza B viruses on a global scale.

Published in:

PLoS Pathogens, 2017, v. 13, n. 12, p. 1, doi. 10.1371/journal.ppat.1006749

By:

Langat, Pinky;
Edwards, Stephanie;
Gall, Astrid;
Kellam, Paul;
Watson, Simon J.;
Raghwani, Jayna;
Pybus, Oliver G.;
Rambaut, Andrew;
Dudas, Gytis;
Bedford, Trevor;
Bowden, Thomas A.;
Daniels, Rodney;
McCauley, John;
Russell, Colin

Publication type:

Article

Distinct rates and patterns of spread of the major HIV-1 subtypes in Central and East Africa.

Published in:

PLoS Pathogens, 2019, v. 15, n. 12, p. 1, doi. 10.1371/journal.ppat.1007976

By:

Faria, Nuno R.;
Vidal, Nicole;
Lourenco, José;
Raghwani, Jayna;
Sigaloff, Kim C. E.;
Tatem, Andy J.;
van de Vijver, David A. M.;
Pineda-Peña, Andrea-Clemencia;
Rose, Rebecca;
Wallis, Carole L.;
Ahuka-Mundeke, Steve;
Muyembe-Tamfum, Jean-Jacques;
Muwonga, Jérémie;
Suchard, Marc A.;
Rinke de Wit, Tobias F.;
Hamers, Raph L.;
Ndembi, Nicaise;
Baele, Guy;
Peeters, Martine;
Pybus, Oliver G.

Publication type:

Article

Bidirectional Movement of Emerging H5N8 Avian Influenza Viruses Between Europe and Asia via Migratory Birds Since Early 2020.

Published in:

Molecular Biology & Evolution, 2023, v. 40, n. 2, p. 1, doi. 10.1093/molbev/msad019

By:

Zhang, Guogang;
Li, Bingying;
Raghwani, Jayna;
Vrancken, Bram;
Jia, Ru;
Hill, Sarah C;
Fournié, Guillaume;
Cheng, Yanchao;
Yang, Qiqi;
Wang, Yuxin;
Wang, Zengmiao;
Dong, Lu;
Pybus, Oliver G;
Tian, Huaiyu

Publication type:

Article

Purifying Selection Determines the Short-Term Time Dependency of Evolutionary Rates in SARS-CoV-2 and pH1N1 Influenza.

Published in:

Molecular Biology & Evolution, 2022, v. 39, n. 2, p. 1, doi. 10.1093/molbev/msac009

By:

Ghafari, Mahan;
Plessis, Louis du;
Raghwani, Jayna;
Bhatt, Samir;
Xu, Bo;
Pybus, Oliver G;
Katzourakis, Aris

Publication type:

Article

Endemic Dengue Associated with the Co-Circulation of Multiple Viral Lineages and Localized Density- Dependent Transmission.

Published in:

PLoS Pathogens, 2011, v. 7, n. 6, p. 1, doi. 10.1371/journal.ppat.1002064

By:

Raghwani, Jayna;
Rambaut, Andrew;
Holmes, Edward C.;
Vu Ty Hang;
Tran Tinh Hien;
Farrar, Jeremy;
Wills, Bridget;
Lennon, Niall J.;
Birren, Bruce W.;
Henn, Matthew R.;
Simmons, Cameron P.

Publication type:

Article

Faster Adaptation in Smaller Populations: Counterintuitive Evolution of HIV during Childhood Infection.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 1, p. 1, doi. 10.1371/journal.pcbi.1004694

By:

Raghwani, Jayna;
Bhatt, Samir;
Pybus, Oliver G.

Publication type:

Article

High-Resolution Evolutionary Analysis of Within-Host Hepatitis C Virus Infection.

Published in:

2019

By:

Raghwani, Jayna;
Wu, Chieh-Hsi;
Ho, Cynthia K Y;
Jong, Menno De;
Molenkamp, Richard;
Schinkel, Janke;
Pybus, Oliver G;
Lythgoe, Katrina A;
De Jong, Menno

Publication type:

journal article

The Evolution and Transmission of Epidemic GII.17 Noroviruses.

Published in:

2016

By:

Jing Lu;
Lin Fang;
Huanying Zheng;
Jiaqian Lao;
Fen Yang;
Limei Sun;
Jianpeng Xiao;
Jinyan Lin;
Tie Song;
Tao Ni;
Jayna Raghwani;
Changwen Ke;
Faria, Nuno R.;
Bowden, Thomas A.;
Pybus, Oliver G.;
Hui Li;
Lu, Jing;
Fang, Lin;
Zheng, Huanying;
Lao, Jiaqian

Publication type:

journal article

Link between the numbers of particles and variants founding new HIV-1 infections depends on the timing of transmission.

Published in:

Virus Evolution, 2019, v. 5, n. 1, p. N.PAG, doi. 10.1093/ve/vey038

By:

Thompson, Robin N;
Wymant, Chris;
Spriggs, Rebecca A;
Raghwani, Jayna;
Fraser, Christophe;
Lythgoe, Katrina A

Publication type:

Article

Where do all the subtypes go? Temporal dynamics of H8-H12 influenza A viruses in waterfowl.

Published in:

Virus Evolution, 2018, v. 4, n. 2, p. 1, doi. 10.1093/ve/vey025

By:

Wille, Michelle;
Latorre-Margalef, Neus;
Tolf, Conny;
Halpin, Rebecca;
Wentworth, David;
Fouchier, Ron A M;
Raghwani, Jayna;
Pybus, Oliver G;
Olsen, Björn;
Waldenström, Jonas

Publication type:

Article

Vulnerabilities in coronavirus glycan shields despite extensive glycosylation.

Published in:

Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-16567-0

By:

Watanabe, Yasunori;
Berndsen, Zachary T.;
Raghwani, Jayna;
Seabright, Gemma E.;
Allen, Joel D.;
Pybus, Oliver G.;
McLellan, Jason S.;
Wilson, Ian A.;
Bowden, Thomas A.;
Ward, Andrew B.;
Crispin, Max

Publication type:

Article

Origins and evolutionary genomics of the 2009 swine-origin H1N1 influenza A epidemic.

Published in:

Nature, 2009, v. 459, n. 7250, p. 1122, doi. 10.1038/nature08182

By:

Smith, Gavin J. D.;
Vijaykrishna, Dhanasekaran;
Bahl, Justin;
Lycett, Samantha J.;
Worobey, Michael;
Pybus, Oliver G.;
Siu Kit Ma;
Chung Lam Cheung;
Raghwani, Jayna;
Bhatt, Samir;
Peiris, J. S. Malik;
Yi Guan;
Rambaut, Andrew

Publication type:

Article

Coalescent Inference Using Serially Sampled, High-Throughput Sequencing Data from Intrahost HIV Infection.

Published in:

Genetics, 2016, v. 202, n. 4, p. 1449, doi. 10.1534/genetics.115.177931

By:

Dialdestoro, Kevin;
Sibbesen, Jonas Andreas;
Maretty, Lasse;
Raghwani, Jayna;
Gall, Astrid;
Kellam, Paul;
Pybus, Oliver G.;
Hein, Jotun;
Jenkins, Paul A.

Publication type:

Article

Genomic Epidemiology of Early SARS-CoV-2 Transmission Dynamics, Gujarat, India.

Published in:

Emerging Infectious Diseases, 2022, v. 28, n. 4, p. 751, doi. 10.3201/eid2804.212053

By:

Raghwani, Jayna;
du Plessis, Louis;
McCrone, John T.;
Hill, Sarah C.;
Parag, Kris V.;
Thézé, Julien;
Kumar, Dinesh;
Puvar, Apurva;
Pandit, Ramesh;
Pybus, Oliver G.;
Fournié, Guillaume;
Joshi, Madhvi;
Joshi, Chaitanya

Publication type:

Article

Molecular Evolution, Diversity, and Adaptation of Influenza A(H7N9) Viruses in China.

Published in:

2018

By:

Jing Lu;
Raghwani, Jayna;
Pryce, Rhys;
Bowden, Thomas A.;
Thézé, Julien;
Shanqian Huang;
Yingchao Song;
Lirong Zou;
Lijun Liang;
Ru Bai;
Yi Jing;
Pingping Zhou;
Min Kang;
Lina Yi;
Jie Wu;
Pybus, Oliver G.;
Changwen Ke;
Lu, Jing;
Huang, Shanqian;
Song, Yingchao

Publication type:

journal article

Effect of Live Poultry Market Interventions on Influenza A(H7N9) Virus, Guangdong, China.

Published in:

2016

By:

Jie Wu;
Jing Lu;
Faria, Nuno R.;
Xianqiao Zeng;
Yingchao Song;
Lirong Zou;
Lina Yi;
Lijun Liang;
Hanzhong Ni;
Min Kang;
Xin Zhang;
Guofeng Huang;
Haojie Zhong;
Bowden, Thomas A.;
Raghwani, Jayna;
Jianfeng He;
Xiang He;
Jinyan Lin;
Koopmans, Marion;
Pybus, Oliver G.

Publication type:

journal article

A de novo approach to inferring within-host fitness effects during untreated HIV-1 infection.

Published in:

PLoS Pathogens, 2020, v. 16, n. 6, p. 1, doi. 10.1371/journal.ppat.1008171

By:

Illingworth, Christopher J. R.;
Raghwani, Jayna;
Serwadda, David;
Sewankambo, Nelson K.;
Robb, Merlin L.;
Eller, Michael A.;
Redd, Andrew R.;
Quinn, Thomas C.;
Lythgoe, Katrina A.

Publication type:

Article

The P323L substitution in the SARS-CoV-2 polymerase (NSP12) confers a selective advantage during infection.

Published in:

Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-02881-5

By:

Goldswain, Hannah;
Dong, Xiaofeng;
Penrice-Randal, Rebekah;
Alruwaili, Muhannad;
Shawli, Ghada T.;
Prince, Tessa;
Williamson, Maia Kavanagh;
Raghwani, Jayna;
Randle, Nadine;
Jones, Benjamin;
Donovan-Banfield, I'ah;
Salguero, Francisco J.;
Tree, Julia A.;
Hall, Yper;
Hartley, Catherine;
Erdmann, Maximilian;
Bazire, James;
Jearanaiwitayakul, Tuksin;
Semple, Malcolm G.;
Openshaw, Peter J. M.

Publication type:

Article

Exceptional Heterogeneity in Viral Evolutionary Dynamics Characterises Chronic Hepatitis C Virus Infection.

Published in:

PLoS Pathogens, 2016, v. 12, n. 9, p. 1, doi. 10.1371/journal.ppat.1005894

By:

Raghwani, Jayna;
Rose, Rebecca;
Sheridan, Isabelle;
Lemey, Philippe;
Suchard, Marc A.;
Santantonio, Teresa;
Farci, Patrizia;
Klenerman, Paul;
Pybus, Oliver G.

Publication type:

Article