Works by Raghava, Gajendra P S

Results: 133

Prediction of hemolytic peptides and their hemolytic concentration.

Published in:

Communications Biology, 2025, v. 8, n. 1, p. 1, doi. 10.1038/s42003-025-07615-w

By:

Rathore, Anand Singh;
Kumar, Nishant;
Choudhury, Shubham;
Mehta, Naman Kumar;
Raghava, Gajendra P. S.

Publication type:

Article

A deep learning method for classification of HNSCC and HPV patients using single-cell transcriptomics.

Published in:

Frontiers in Molecular Biosciences, 2024, p. 1, doi. 10.3389/fmolb.2024.1395721

By:

Jarwal, Akanksha;
Dhall, Anjali;
Arora, Akanksha;
Patiyal, Sumeet;
Srivastava, Aman;
Raghava, Gajendra P. S.

Publication type:

Article

Prediction of inhibitory peptides against E.coli with desired MIC value.

Published in:

Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-025-86638-z

By:

Bajiya, Nisha;
Kumar, Nishant;
Raghava, Gajendra P. S.

Publication type:

Article

Designing of promiscuous inhibitors against pancreatic cancer cell lines.

Published in:

Scientific Reports, 2014, p. 1, doi. 10.1038/srep04668

By:

Kumar, Rahul;
Chaudhary, Kumardeep;
Singla, Deepak;
Gautam, Ankur;
Raghava, Gajendra P. S.

Publication type:

Article

Herceptin Resistance Database for Understanding Mechanism of Resistance in Breast Cancer Patients.

Published in:

Scientific Reports, 2014, p. 1, doi. 10.1038/srep04483

By:

Ahmad, Sahil;
Gupta, Sudheer;
Kumar, Rahul;
Varshney, Grish C.;
Raghava, Gajendra P. S.

Publication type:

Article

PCMdb: Pancreatic Cancer Methylation Database.

Published in:

Scientific Reports, 2014, p. 1, doi. 10.1038/srep04197

By:

Nagpal, Gandharva;
Sharma, Minakshi;
Kumar, Shailesh;
Chaudhary, Kumardeep;
Gupta, Sudheer;
Gautam, Ankur;
Raghava, Gajendra P. S.

Publication type:

Article

Computing Skin Cutaneous Melanoma Outcome From the HLA-Alleles and Clinical Characteristics.

Published in:

Frontiers in Genetics, 2020, p. 1, doi. 10.3389/fgene.2020.00221

By:

Dhall, Anjali;
Patiyal, Sumeet;
Kaur, Harpreet;
Bhalla, Sherry;
Arora, Chakit;
Raghava, Gajendra P. S.

Publication type:

Article

Identification of Platform-Independent Diagnostic Biomarker Panel for Hepatocellular Carcinoma Using Large-Scale Transcriptomics Data.

Published in:

Frontiers in Genetics, 2020, v. 10, p. 1, doi. 10.3389/fgene.2019.01306

By:

Kaur, Harpreet;
Dhall, Anjali;
Kumar, Rajesh;
Raghava, Gajendra P. S.

Publication type:

Article

SVM based prediction of RNA-binding proteins using binding residues and evolutionary information.

Published in:

Journal of Molecular Recognition, 2011, v. 24, n. 2, p. 303, doi. 10.1002/jmr.1061

By:

Kumar, Manish;
Gromiha, M. Michael;
Raghava, Gajendra P. S.

Publication type:

Article

Computational resources for identification of cancer biomarkers from omics data.

Published in:

Briefings in Functional Genomics, 2021, v. 20, n. 4, p. 213, doi. 10.1093/bfgp/elab021

By:

Kaur, Harpreet;
Kumar, Rajesh;
Lathwal, Anjali;
Raghava, Gajendra P S

Publication type:

Article

Development of a model webserver for breed identification using microsatellite DNA marker.

Published in:

BMC Genetics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2156-14-118

By:

Asif Iquebal, Mir;
Jaiswal, Sarika;
Kumar Dhanda, Sandeep;
Arora, Vasu;
Pal Dixit, Sat;
Raghava, Gajendra P. S.;
Rai, Anil;
Kumar, Dinesh

Publication type:

Article

RSLpred: an integrative system for predicting subcellular localization of rice proteins combining compositional and evolutionary information.

Published in:

Proteomics, 2009, v. 9, n. 9, p. 2324, doi. 10.1002/pmic.200700597

By:

Kaundal, Rakesh;
Raghava, Gajendra P. S.

Publication type:

Article

NPACT: Naturally Occurring Plant-based Anti-cancer Compound-Activity-Target database.

Published in:

Nucleic Acids Research, 2013, v. 41, p. D1124, doi. 10.1093/nar/gks1047

By:

Mangal, Manu;
Sagar, Parul;
Singh, Harinder;
Raghava, Gajendra P. S.;
Agarwal, Subhash M.

Publication type:

Article

ccPDB: compilation and creation of data sets from Protein Data Bank.

Published in:

Nucleic Acids Research, 2012, p. D486, doi. 10.1093/nar/gkr1150

By:

Singh, Harinder;
Chauhan, Jagat Singh;
Gromiha, M. Michael;
Raghava, Gajendra P. S.

Publication type:

Article

ProGlycProt: a repository of experimentally characterized prokaryotic glycoproteins.

Published in:

Nucleic Acids Research, 2012, p. D388, doi. 10.1093/nar/gkr911

By:

Bhat, Aadil H.;
Mondal, Homchoru;
Chauhan, Jagat S.;
Raghava, Gajendra P. S.;
Methi, Amrish;
Rao, Alka

Publication type:

Article

Computational resources in healthcare.

Published in:

WIREs: Data Mining & Knowledge Discovery, 2022, v. 12, n. 3, p. 1, doi. 10.1002/widm.1437

By:

Sharma, Neelam;
Naorem, Leimarembi Devi;
Gupta, Satakshi;
Raghava, Gajendra P. S.

Publication type:

Article

OxDBase: a database of oxygenases involved in biodegradation.

Published in:

BMC Research Notes, 2009, v. 2, p. 1, doi. 10.1186/1756-0500-2-67

By:

Arora, Pankaj K.;
Kumar, Manish;
Chauhan, Archana;
Raghava, Gajendra P. S.;
Jain, Rakesh K.

Publication type:

Article

MHCBN 4.0: A database of MHC/TAP binding peptides and T-cell epitopes.

Published in:

BMC Research Notes, 2009, v. 2, p. 1, doi. 10.1186/1756-0500-2-61

By:

Lata, Sneh;
Bhasin, Manoj;
Raghava, Gajendra P. S.

Publication type:

Article

Expression based biomarkers and models to classify early and late-stage samples of Papillary Thyroid Carcinoma.

Published in:

PLoS ONE, 2020, v. 15, n. 4, p. 1, doi. 10.1371/journal.pone.0231629

By:

Bhalla, Sherry;
Kaur, Harpreet;
Kaur, Rishemjit;
Sharma, Suresh;
Raghava, Gajendra P. S.

Publication type:

Article

Prediction of risk scores for colorectal cancer patients from the concentration of proteins involved in mitochondrial apoptotic pathway.

Published in:

PLoS ONE, 2019, v. 14, n. 9, p. 1, doi. 10.1371/journal.pone.0217527

By:

Lathwal, Anjali;
Arora, Chakit;
Raghava, Gajendra P. S.

Publication type:

Article

Classification of early and late stage liver hepatocellular carcinoma patients from their genomics and epigenomics profiles.

Published in:

PLoS ONE, 2019, v. 14, n. 9, p. 1, doi. 10.1371/journal.pone.0221476

By:

Kaur, Harpreet;
Bhalla, Sherry;
Raghava, Gajendra P. S.

Publication type:

Article

ProCarDB: a database of bacterial carotenoids.

Published in:

BMC Microbiology, 2016, v. 16, p. 1, doi. 10.1186/s12866-016-0715-6

By:

Nupur, L. N. U.;
Vats, Asheema;
Dhanda, Sandeep Kumar;
Raghava, Gajendra P. S.;
Pinnaka, Anil Kumar;
Kumar, Ashwani

Publication type:

Article

APBioNet's annual International Conference on Bioinformatics (InCoB) returns to India in 2018.

Published in:

BMC Genomics, 2019, v. 19, n. 9, p. N.PAG, doi. 10.1186/s12864-019-5582-8

By:

Ahmad, Shandar;
Gromiha, Michael M.;
Raghava, Gajendra P. S.;
Schönbach, Christian;
Ranganathan, Shoba

Publication type:

Article

HumCFS: a database of fragile sites in human chromosomes.

Published in:

BMC Genomics, 2019, v. 19, n. 9, p. N.PAG, doi. 10.1186/s12864-018-5330-5

By:

Kumar, Rajesh;
Nagpal, Gandharva;
Kumar, Vinod;
Usmani, Salman Sadullah;
Agrawal, Piyush;
Raghava, Gajendra P. S.

Publication type:

Article

AntiBP3: A Method for Predicting Antibacterial Peptides against Gram-Positive/Negative/Variable Bacteria.

Published in:

Antibiotics (2079-6382), 2024, v. 13, n. 2, p. 168, doi. 10.3390/antibiotics13020168

By:

Bajiya, Nisha;
Choudhury, Shubham;
Dhall, Anjali;
Raghava, Gajendra P. S.

Publication type:

Article

A Web Resource for Designing Subunit Vaccine Against Major Pathogenic Species of Bacteria.

Published in:

Frontiers in Immunology, 2018, p. 1, doi. 10.3389/fimmu.2018.02280

By:

Nagpal, Gandharva;
Usmani, Salman Sadullah;
Raghava, Gajendra P. S.

Publication type:

Article

A Platform for Designing Genome-Based Personalized Immunotherapy or Vaccine against Cancer.

Published in:

PLoS ONE, 2016, v. 11, n. 11, p. 1, doi. 10.1371/journal.pone.0166372

By:

Gupta, Sudheer;
Chaudhary, Kumardeep;
Dhanda, Sandeep Kumar;
Kumar, Rahul;
Kumar, Shailesh;
Sehgal, Manika;
Nagpal, Gandharva;
Raghava, Gajendra P. S.

Publication type:

Article

A Web-Based Platform for Designing Vaccines against Existing and Emerging Strains of Mycobacterium tuberculosis.

Published in:

PLoS ONE, 2016, v. 11, n. 4, p. 1, doi. 10.1371/journal.pone.0153771

By:

Dhanda, Sandeep Kumar;
Vir, Pooja;
Singla, Deepak;
Gupta, Sudheer;
Kumar, Shailesh;
Raghava, Gajendra P. S.

Publication type:

Article

Benchmarking of different molecular docking methods for protein-peptide docking.

Published in:

BMC Bioinformatics, 2019, v. 19, n. 13, p. 105, doi. 10.1186/s12859-018-2449-y

By:

Agrawal, Piyush;
Singh, Harinder;
Srivastava, Hemant Kumar;
Singh, Sandeep;
Kishore, Gaurav;
Raghava, Gajendra P. S.

Publication type:

Article

Prediction of Plant Resistance Proteins Using Alignment‐Based and Alignment‐Free Approaches.

Published in:

Proteomics, 2025, v. 25, n. 5/6, p. 1, doi. 10.1002/pmic.202400261

By:

Gahlot, Pushpendra Singh;
Choudhury, Shubham;
Bajiya, Nisha;
Kumar, Nishant;
Raghava, Gajendra P. S.

Publication type:

Article

Prediction of Anti‐Freezing Proteins From Their Evolutionary Profile.

Published in:

Proteomics, 2025, v. 25, n. 3, p. 1, doi. 10.1002/pmic.202400157

By:

Kumar, Nishant;
Choudhury, Shubham;
Bajiya, Nisha;
Patiyal, Sumeet;
Raghava, Gajendra P. S.

Publication type:

Article

Prediction of peptide hormones using an ensemble of machine learning and similarity‐based methods.

Published in:

Proteomics, 2024, v. 24, n. 20, p. 1, doi. 10.1002/pmic.202400004

By:

Kaur, Dashleen;
Arora, Akanksha;
Vigneshwar, Palani;
Raghava, Gajendra P. S.

Publication type:

Article

A random forest model for predicting exosomal proteins using evolutionary information and motifs.

Published in:

Proteomics, 2024, v. 24, n. 6, p. 1, doi. 10.1002/pmic.202300231

By:

Arora, Akanksha;
Patiyal, Sumeet;
Sharma, Neelam;
Devi, Naorem Leimarembi;
Kaur, Dashleen;
Raghava, Gajendra P. S.

Publication type:

Article

Universal and cross‐cancer prognostic biomarkers for predicting survival risk of cancer patients from expression profile of apoptotic pathway genes.

Published in:

Proteomics, 2022, v. 22, n. 3, p. 1, doi. 10.1002/pmic.202000311

By:

Arora, Chakit;
Kaur, Dilraj;
Raghava, Gajendra P. S.

Publication type:

Article

A hybrid approach for predicting transcription factors.

Published in:

Frontiers in Bioinformatics, 2024, p. 1, doi. 10.3389/fbinf.2024.1425419

By:

Patiyal, Sumeet;
Tiwari, Palak;
Ghai, Mohit;
Dhapola, Aman;
Dhall, Anjali;
Raghava, Gajendra P. S.

Publication type:

Article

MRSLpred--a hybrid approach for predicting multi-label subcellular localization of mRNA at the genome scale.

Published in:

Frontiers in Bioinformatics, 2024, p. 1, doi. 10.3389/fbinf.2024.1341479

By:

Choudhury, Shubham;
Bajiya, Nisha;
Patiyal, Sumeet;
Raghava, Gajendra P. S.

Publication type:

Article

Advances in the field of phage-based therapy with special emphasis on computational resources.

Published in:

Briefings in Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1093/bib/bbac574

By:

Bajiya, Nisha;
Dhall, Anjali;
Aggarwal, Suchet;
Raghava, Gajendra P S

Publication type:

Article

Prediction of RNA-interacting residues in a protein using CNN and evolutionary profile.

Published in:

Briefings in Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1093/bib/bbac538

By:

Patiyal, Sumeet;
Dhall, Anjali;
Bajaj, Khushboo;
Sahu, Harshita;
Raghava, Gajendra P S

Publication type:

Article

DMPPred: a tool for identification of antigenic regions responsible for inducing type 1 diabetes mellitus.

Published in:

Briefings in Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1093/bib/bbac525

By:

Kumar, Nishant;
Patiyal, Sumeet;
Choudhury, Shubham;
Tomer, Ritu;
Dhall, Anjali;
Raghava, Gajendra P S

Publication type:

Article

deep learning-based method for the prediction of DNA interacting residues in a protein.

Published in:

Briefings in Bioinformatics, 2022, v. 23, n. 5, p. 1, doi. 10.1093/bib/bbac322

By:

Patiyal, Sumeet;
Dhall, Anjali;
Raghava, Gajendra P S

Publication type:

Article

HLAncPred: a method for predicting promiscuous non-classical HLA binding sites.

Published in:

Briefings in Bioinformatics, 2022, v. 23, n. 5, p. 1, doi. 10.1093/bib/bbac192

By:

Dhall, Anjali;
Patiyal, Sumeet;
Raghava, Gajendra P S

Publication type:

Article

ToxinPred2: an improved method for predicting toxicity of proteins.

Published in:

Briefings in Bioinformatics, 2022, v. 23, n. 5, p. 1, doi. 10.1093/bib/bbac174

By:

Sharma, Neelam;
Naorem, Leimarembi Devi;
Jain, Shipra;
Raghava, Gajendra P S

Publication type:

Article

AlgPred 2.0: an improved method for predicting allergenic proteins and mapping of IgE epitopes.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa294

By:

Sharma, Neelam;
Patiyal, Sumeet;
Dhall, Anjali;
Pande, Akshara;
Arora, Chakit;
Raghava, Gajendra P S

Publication type:

Article

AntiCP 2.0: an updated model for predicting anticancer peptides.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 3, p. 1, doi. 10.1093/bib/bbaa153

By:

Agrawal, Piyush;
Bhagat, Dhruv;
Mahalwal, Manish;
Sharma, Neelam;
Raghava, Gajendra P S

Publication type:

Article

DenvInD: dengue virus inhibitors database for clinical and molecular research.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 3, p. 1, doi. 10.1093/bib/bbaa098

By:

Dwivedi, Vivek Dhar;
Arya, Aditya;
Yadav, Pardeep;
Kumar, Rajesh;
Kumar, Vinod;
Raghava, Gajendra P S

Publication type:

Article

Computer-aided prediction and design of IL-6 inducing peptides: IL-6 plays a crucial role in COVID-19.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 2, p. 936, doi. 10.1093/bib/bbaa259

By:

Dhall, Anjali;
Patiyal, Sumeet;
Sharma, Neelam;
Usmani, Salman Sadullah;
Raghava, Gajendra P S

Publication type:

Article

Novel in silico tools for designing peptide-based subunit vaccines and immunotherapeutics.

Published in:

Briefings in Bioinformatics, 2017, v. 18, n. 3, p. 467, doi. 10.1093/bib/bbw025

By:

Dhanda, Sandeep Kumar;
Usmani, Salman Sadullah;
Agrawal, Piyush;
Nagpal, Gandharva;
Gautam, Ankur;
Raghava, Gajendra P. S.

Publication type:

Article

SAMbinder: A Web Server for Predicting S-Adenosyl-L-Methionine Binding Residues of a Protein From Its Amino Acid Sequence.

Published in:

Frontiers in Pharmacology, 2020, v. 10, p. 1, doi. 10.3389/fphar.2019.01690

By:

Agrawal, Piyush;
Mishra, Gaurav;
Raghava, Gajendra P. S.

Publication type:

Article

Designing of inhibitors against drug tolerant Mycobacterium tuberculosis (H37Rv).

Published in:

Chemistry Central Journal, 2013, v. 7, n. 1, p. 1, doi. 10.1186/1752-153X-7-49

By:

Singla, Deepak;
Tewari, Rupinder;
Kumar, Ashwani;
Raghava, Gajendra P. S.

Publication type:

Article

TopicalPdb: A database of topically delivered peptides.

Published in:

PLoS ONE, 2018, v. 13, n. 2, p. 1, doi. 10.1371/journal.pone.0190134

By:

Mathur, Deepika;
Mehta, Ayesha;
Firmal, Priyanka;
Bedi, Gursimran;
Sood, Charu;
Gautam, Ankur;
Raghava, Gajendra P. S.

Publication type:

Article