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Analysis of the draft genome of Pseudomonas fluorescens ATCC17400 indicates a capacity to take up iron from a wide range of sources, including different exogenous pyoverdines.
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- BioMetals, 2014, v. 27, n. 4, p. 633, doi. 10.1007/s10534-014-9734-7
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- Article
A combinatorial approach to the structure elucidation of a pyoverdine siderophore produced by a Pseudomonas putida isolate and the use of pyoverdine as a taxonomic marker for typing P. putida subspecies.
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- BioMetals, 2013, v. 26, n. 4, p. 561, doi. 10.1007/s10534-013-9653-z
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- Publication type:
- Article
The role of short-chain fatty acids (SCFAs) in regulating stress responses, eating behavior, and nutritional state in anorexia nervosa: protocol for a randomized controlled trial.
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- Journal of Eating Disorders, 2023, v. 11, n. 1, p. 1, doi. 10.1186/s40337-023-00917-6
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- Article
Gut Microbiome Profiling Uncovers a Lower Abundance of Butyricicoccus in Advanced Stages of Chronic Kidney Disease.
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- Journal of Personalized Medicine, 2021, v. 11, n. 11, p. 1118, doi. 10.3390/jpm11111118
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- Article
Worldwide trends in scientific publications on association of gut microbiota with obesity.
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- Iranian Journal of Basic Medical Sciences, 2019, v. 22, n. 1, p. 65, doi. 10.22038/ijbms.2018.30203.7281
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- Article
High Acetate Concentration Protects Intestinal Barrier and Exerts Anti-Inflammatory Effects in Organoid-Derived Epithelial Monolayer Cultures from Patients with Ulcerative Colitis.
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- International Journal of Molecular Sciences, 2023, v. 24, n. 1, p. 768, doi. 10.3390/ijms24010768
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- Article
Duodenal Dysbiosis and Relation to the Efficacy of Proton Pump Inhibitors in Functional Dyspepsia.
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- International Journal of Molecular Sciences, 2021, v. 22, n. 24, p. 13609, doi. 10.3390/ijms222413609
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- Article
IPED: a highly efficient denoising tool for Illumina MiSeq Paired-end 16S rRNA gene amplicon sequencing data.
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- BMC Bioinformatics, 2016, v. 17, p. 1, doi. 10.1186/s12859-016-1061-2
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- Article
Deep ocean metagenomes provide insight into the metabolic architecture of bathypelagic microbial communities.
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- Communications Biology, 2021, v. 4, n. 1, p. 1, doi. 10.1038/s42003-021-02112-2
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- Article
Fecal Microbiota Transplantation (FMT) as an Adjunctive Therapy for Depression—Case Report.
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- Frontiers in Psychiatry, 2022, v. 13, p. 1, doi. 10.3389/fpsyt.2022.815422
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- Article
ImmUniverse Consortium: Multi-omics integrative approach in personalized medicine for immune-mediated inflammatory diseases.
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- Frontiers in Immunology, 2022, v. 13, p. 01, doi. 10.3389/fimmu.2022.1002629
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- Article
High Serum Vitamin D Concentrations, Induced via Diet, Trigger Immune and Intestinal Microbiota Alterations Leading to Type 1 Diabetes Protection in NOD Mice.
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- Frontiers in Immunology, 2022, v. 13, p. 1, doi. 10.3389/fimmu.2022.902678
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- Article
Temporal variability in quantitative human gut microbiome profiles and implications for clinical research.
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- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-27098-7
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- Article
Benchmarking microbiome transformations favors experimental quantitative approaches to address compositionality and sampling depth biases.
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- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-23821-6
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- Article
Translating the human microbiome.
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- Nature Biotechnology, 2013, v. 31, n. 4, p. 304, doi. 10.1038/nbt.2543
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- Article
Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2013, v. 7, n. 9, p. 1678, doi. 10.1038/ismej.2013.59
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- Article
The chemical interactome space between the human host and the genetically defined gut metabotypes.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2013, v. 7, n. 4, p. 730, doi. 10.1038/ismej.2012.141
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- Article
The human small intestinal microbiota is driven by rapid uptake and conversion of simple carbohydrates.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2012, v. 6, n. 7, p. 1415, doi. 10.1038/ismej.2011.212
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- Article
Trial in Elderly with Musculoskeletal Problems due to Underlying Sarcopenia—Faeces to Unravel the Gut and Inflammation Translationally (TEMPUS-FUGIT): protocol of a cross-sequential study to explore the gut-muscle axis in the development and treatment of sarcopenia in community-dwelling older adults
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- BMC Geriatrics, 2023, v. 23, n. 1, p. 1, doi. 10.1186/s12877-023-04291-5
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- Publication type:
- Article
The skin microbiome of caspase-14-deficient mice shows mild dysbiosis.
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- Experimental Dermatology, 2014, v. 23, n. 8, p. 561, doi. 10.1111/exd.12458
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- Article
From reads to operational taxonomic units: an ensemble processing pipeline for MiSeq amplicon sequencing data.
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- GigaScience, 2017, v. 6, n. 2, p. 1, doi. 10.1093/gigascience/giw017
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- Article
Sputum Bacterial Metacommunities in Distinguishing Heterogeneity in Respiratory Health and Disease.
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- Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.719541
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- Article
Soil microbiome responses to the short-term effects of Amazonian deforestation.
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- Molecular Ecology, 2015, v. 24, n. 10, p. 2433, doi. 10.1111/mec.13172
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- Article
Integrated Metagenomics/Metaproteomics Reveals Human Host-Microbiota Signatures of Crohn's Disease.
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- PLoS ONE, 2012, v. 7, n. 11, p. 1, doi. 10.1371/journal.pone.0049138
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- Article
Assessment of Metagenomic Assembly Using Simulated Next Generation Sequencing Data.
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- PLoS ONE, 2012, v. 7, n. 2, p. 1, doi. 10.1371/journal.pone.0031386
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- Article
Universally Distributed Single-Copy Genes Indicate a Constant Rate of Horizontal Transfer.
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- PLoS ONE, 2011, v. 6, n. 8, p. 1, doi. 10.1371/journal.pone.0022099
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- Article
A Nitrile Hydratase in the Eukaryote Monosiga brevicollis.
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- PLoS ONE, 2008, v. 3, n. 12, p. 1, doi. 10.1371/journal.pone.0003976
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- Article
A Molecular Study of Microbe Transfer between Distant Environments.
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- PLoS ONE, 2008, v. 3, n. 7, p. 1, doi. 10.1371/journal.pone.0002607
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- Article
Clinical, gut microbial and neural effects of a probiotic add-on therapy in depressed patients: a randomized controlled trial.
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- Translational Psychiatry, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41398-022-01977-z
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- Article
Systematic optimization of fermentation conditions for in vitro fermentations with fecal inocula.
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- Frontiers in Microbiology, 2023, p. 1, doi. 10.3389/fmicb.2023.1198903
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- Article
Associations of HIV and iron status with gut microbiota composition, gut inflammation and gut integrity in South African school‐age children: a two‐way factorial case–control study.
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- Journal of Human Nutrition & Dietetics, 2023, v. 36, n. 3, p. 819, doi. 10.1111/jhn.13171
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- Article
Effects of fecal microbiota transplantation for recurrent Clostridium difficile infection in children on kidney replacement therapy: a pilot study.
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- Pediatric Nephrology, 2024, v. 39, n. 4, p. 1201, doi. 10.1007/s00467-023-06168-6
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- Article
Accumulation of Black Carbon Particles in Placenta, Cord Blood, and Childhood Urine in Association with the Intestinal Microbiome Diversity and Composition in Four- to Six-Year-Old Children in the ENVIRONAGE Birth Cohort.
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- Environmental Health Perspectives, 2023, v. 131, n. 1, p. 017010-1, doi. 10.1289/EHP11257
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- Article
Commensal microbiota influence systemic autoimmune responses.
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- EMBO Journal, 2015, v. 34, n. 4, p. 466, doi. 10.15252/embj.201489966
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- Article
Metformin induces weight loss associated with gut microbiota alteration in non-diabetic obese women: a randomized double-blind clinical trial.
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- European Journal of Endocrinology, 2019, v. 180, n. 3, p. 165, doi. 10.1530/EJE-18-0826
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- Article
NoDe: a fast error-correction algorithm for pyrosequencing amplicon reads
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- BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-015-0520-5
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- Article
Enterotypes of the human gut microbiome.
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- 2011
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- Correction Notice
Enterotypes of the human gut microbiome.
- Published in:
- Nature, 2011, v. 473, n. 7346, p. 174, doi. 10.1038/nature09944
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- Article
A human gut microbial gene catalogue established by metagenomic sequencing.
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- Nature, 2010, v. 464, n. 7285, p. 59, doi. 10.1038/nature08821
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- Article
Prediction and identification of sequences coding for orphan enzymes using genomic and metagenomic neighbours.
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- Molecular Systems Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1038/msb.2012.13
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- Article
Toward molecular trait-based ecology through integration of biogeochemical, geographical and metagenomic data.
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- Molecular Systems Biology, 2011, v. 7, n. 1, p. 1, doi. 10.1038/msb.2011.6
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- Publication type:
- Article
Millimeter-scale genetic gradients and community-level molecular convergence in a hypersaline microbial mat.
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- Molecular Systems Biology, 2008, v. 4, n. 1, p. 1, doi. 10.1038/msb.2008.35
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- Publication type:
- Article
Microbial Co-occurrence Relationships in the Human Microbiome.
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- PLoS Computational Biology, 2012, v. 8, n. 7, p. 1, doi. 10.1371/journal.pcbi.1002606
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- Article
Unstable regulatory T cells, enriched for naïve and Nrp1<sup>neg</sup> cells, are purged after fate challenge.
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- Science Immunology, 2021, v. 6, n. 61, p. 1, doi. 10.1126/sciimmunol.abe4723
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- Article
Gut microbiome variation is associated to Multiple Sclerosis phenotypic subtypes.
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- Annals of Clinical & Translational Neurology, 2020, v. 7, n. 4, p. 406, doi. 10.1002/acn3.51004
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- Article
Gut microbiota response to in vitro transit time variation is mediated by microbial growth rates, nutrient use efficiency and adaptation to in vivo transit time.
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- Microbiome, 2023, v. 11, n. 1, p. 1, doi. 10.1186/s40168-023-01691-y
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- Article
Effect of cryopreservation medium conditions on growth and isolation of gut anaerobes from human faecal samples.
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- Microbiome, 2022, v. 10, n. 1, p. 1, doi. 10.1186/s40168-022-01267-2
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- Article
Introducing insoluble wheat bran as a gut microbiota niche in an in vitro dynamic gut model stimulates propionate and butyrate production and induces colon region specific shifts in the luminal and mucosal microbial community.
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- Environmental Microbiology, 2018, v. 20, n. 9, p. 3406, doi. 10.1111/1462-2920.14381
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- Article
Fire modifies the phylogenetic structure of soil bacterial co-occurrence networks.
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- Environmental Microbiology, 2017, v. 19, n. 1, p. 317, doi. 10.1111/1462-2920.13609
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- Article
Species-sorting and mass-transfer paradigms control managed natural metacommunities.
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- Environmental Microbiology, 2016, v. 18, n. 12, p. 4862, doi. 10.1111/1462-2920.13402
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- Article