Works by Raaijmakers, Jos M

Results: 79

Going back to the roots: the microbial ecology of the rhizosphere.

Published in:

Nature Reviews Microbiology, 2013, v. 11, n. 11, p. 789, doi. 10.1038/nrmicro3109

By:

Philippot, Laurent;
Raaijmakers, Jos M.;
Lemanceau, Philippe;
van der Putten, Wim H.

Publication type:

Article

Investigations into the Biosynthesis, Regulation, and Self-Resistance of Toxoflavin in Pseudomonas protegens Pf-5.

Published in:

ChemBioChem, 2015, v. 16, n. 12, p. 1782, doi. 10.1002/cbic.201500247

By:

Philmus, Benjamin;
Shaffer, Brenda T.;
Kidarsa, Teresa A.;
Yan, Qing;
Raaijmakers, Jos M.;
Begley, Tadhg P.;
Loper, Joyce E.

Publication type:

Article

Biosynthetic Origin of the Antibiotic Cyclocarbamate Brabantamide A (SB-253514) in Plant-Associated Pseudomonas.

Published in:

ChemBioChem, 2014, v. 15, n. 2, p. 259, doi. 10.1002/cbic.201300527

By:

Schmidt, Yvonne;
van der Voort, Menno;
Crüsemann, Max;
Piel, Jörn;
Josten, Michaele;
Sahl, Hans‐Georg;
Miess, Henrike;
Raaijmakers, Jos M.;
Gross, Harald

Publication type:

Article

Repeated exposure of wheat to the fungal root pathogen Bipolaris sorokiniana modulates rhizosphere microbiome assembly and disease suppressiveness.

Published in:

Environmental Microbiome, 2023, v. 18, n. 1, p. 1, doi. 10.1186/s40793-023-00529-2

By:

Costa, Lilian S. Abreu Soares;
de Faria, Mírian Rabelo;
Chiaramonte, Josiane Barros;
Mendes, Lucas W.;
Sepo, Edis;
de Hollander, Mattias;
Fernandes, José Maurício Cunha;
Carrión, Víctor J.;
Bettiol, Wagner;
Mauchline, Tim H.;
Raaijmakers, Jos M.;
Mendes, Rodrigo

Publication type:

Article

Impact of the fungal pathogen Fusarium oxysporum on the taxonomic and functional diversity of the common bean root microbiome.

Published in:

Environmental Microbiome, 2023, v. 18, n. 1, p. 1, doi. 10.1186/s40793-023-00524-7

By:

Mendes, Lucas William;
Raaijmakers, Jos M;
de Hollander, Mattias;
Sepo, Edis;
Gómez Expósito, Ruth;
Chiorato, Alisson Fernando;
Mendes, Rodrigo;
Tsai, Siu Mui;
Carrión, Victor J

Publication type:

Article

Domesticated rice alters the rhizosphere microbiome, reducing nitrogen fixation and increasing nitrous oxide emissions.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-57213-x

By:

Chang, Jingjing;
Costa, Ohana Y. A.;
Sun, Yu;
Wang, Jilin;
Tian, Lei;
Shi, Shaohua;
Wang, Enze;
Ji, Li;
Wang, Changji;
Pang, Yingnan;
Yao, Zongmu;
Ye, Libo;
Zhang, Jianfeng;
Chen, Hongping;
Cai, Yaohui;
Chen, Dazhou;
Song, Zhiping;
Rong, Jun;
Raaijmakers, Jos M.;
Tian, Chunjie

Publication type:

Article

The rhizosphere: a playground and battlefield for soilborne pathogens and beneficial microorganisms.

Published in:

2009

By:

Raaijmakers, Jos M.;
Paulitz, Timothy C.;
Steinberg, Christian;
Alabouvette, Claude;
Moënne-Loccoz, Yvan

Publication type:

Book Review

Plant neighbours can make or break the disease transmission chain of a fungal root pathogen.

Published in:

New Phytologist, 2022, v. 233, n. 3, p. 1303, doi. 10.1111/nph.17866

By:

Ampt, Eline A.;
van Ruijven, Jasper;
Zwart, Mark P.;
Raaijmakers, Jos M.;
Termorshuizen, Aad J.;
Mommer, Liesje

Publication type:

Article

Lost in diversity: the interactions between soil‐borne fungi, biodiversity and plant productivity.

Published in:

New Phytologist, 2018, v. 218, n. 2, p. 542, doi. 10.1111/nph.15036

By:

Mommer, Liesje;
Cotton, T. E. Anne;
Raaijmakers, Jos M.;
Termorshuizen, Aad J.;
van Ruijven, Jasper;
Hendriks, Marloes;
van Rijssel, Sophia Q.;
van de Mortel, Judith E.;
van der Paauw, Jan Willem;
Schijlen, Elio G. W. M.;
Smit‐Tiekstra, Annemiek E.;
Berendse, Frank;
de Kroon, Hans;
Dumbrell, Alex J.

Publication type:

Article

Resistance Breeding of Common Bean Shapes the Physiology of the Rhizosphere Microbiome.

Published in:

Frontiers in Microbiology, 2019, p. 1, doi. 10.3389/fmicb.2019.02252

By:

Mendes, Lucas William;
de Chaves, Miriam Gonçalves;
Fonseca, Mariley de Cassia;
Mendes, Rodrigo;
Raaijmakers, Jos M.;
Tsai, Siu Mui

Publication type:

Article

Genome-based discovery, structure prediction and functional analysis of cyclic lipopeptide antibiotics in Pseudomonas species.

Published in:

Molecular Microbiology, 2007, v. 63, n. 2, p. 417, doi. 10.1111/j.1365-2958.2006.05525.x

By:

de Bruijn, Irene;
de Kock, Maarten J. D.;
Yang, Meng;
de Waard, Pieter;
van Beek, Teris A.;
Raaijmakers, Jos M.

Publication type:

Article

Disentangling the genetic basis of rhizosphere microbiome assembly in tomato.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-30849-9

By:

Oyserman, Ben O.;
Flores, Stalin Sarango;
Griffioen, Thom;
Pan, Xinya;
van der Wijk, Elmar;
Pronk, Lotte;
Lokhorst, Wouter;
Nurfikari, Azkia;
Paulson, Joseph N.;
Movassagh, Mercedeh;
Stopnisek, Nejc;
Kupczok, Anne;
Cordovez, Viviane;
Carrión, Víctor J.;
Ligterink, Wilco;
Snoek, Basten L.;
Medema, Marnix H.;
Raaijmakers, Jos M.

Publication type:

Article

Lipopeptide biosynthesis in Pseudomonas fluorescens is regulated by the protease complex ClpAP.

Published in:

BMC Microbiology, 2015, v. 15, n. 1, p. 1, doi. 10.1186/s12866-015-0367-y

By:

Chunxu Song;
Sundqvist, Gustav;
Malm, Erik;
de Bruijn, Irene;
Kumar, Aundy;
van de Mortel, Judith;
Bulone, Vincent;
Raaijmakers, Jos M.

Publication type:

Article

Mangotoxin production of Pseudomonas syringae pv. syringae is regulated by MgoA.

Published in:

BMC Microbiology, 2014, v. 14, n. 1, p. 1, doi. 10.1186/1471-2180-14-46

By:

Carrión, Víctor J.;
van de ^Voort, Menno;
Arrebola, Eva;
Gutiérrez-Barranquero, José A.;
de Vicente, Antonio;
Raaijmakers, Jos M.;
Cazorla, Francisco M.

Publication type:

Article

Inter- and intracellular colonization of <italic>Arabidopsis</italic> roots by endophytic actinobacteria and the impact of plant hormones on their antimicrobial activity.

Published in:

Antonie van Leeuwenhoek, 2018, v. 111, n. 5, p. 679, doi. 10.1007/s10482-018-1014-z

By:

van der Meij, Anne;
Willemse, Joost;
Schneijderberg, Martinus A.;
Geurts, René;
Raaijmakers, Jos M.;
van Wezel, Gilles P.

Publication type:

Article

Deciphering rhizosphere microbiome assembly of wild and modern common bean (Phaseolus vulgaris) in native and agricultural soils from Colombia.

Published in:

Microbiome, 2019, v. 7, n. 1, p. N.PAG, doi. 10.1186/s40168-019-0727-1

By:

Pérez-Jaramillo, Juan E.;
de Hollander, Mattias;
Ramírez, Camilo A.;
Mendes, Rodrigo;
Raaijmakers, Jos M.;
Carrión, Víctor J.

Publication type:

Article

The wild side of plant microbiomes.

Published in:

Microbiome, 2018, v. 6, n. 1, p. N.PAG, doi. 10.1186/s40168-018-0519-z

By:

Pérez-Jaramillo, Juan E.;
Carrión, Víctor J.;
de Hollander, Mattias;
Raaijmakers, Jos M.

Publication type:

Article

The Chemistry of Stress: Understanding the 'Cry for Help' of Plant Roots.

Published in:

Metabolites (2218-1989), 2021, v. 11, n. 6, p. 357, doi. 10.3390/metabo11060357

By:

Rizaludin, Muhammad Syamsu;
Stopnisek, Nejc;
Raaijmakers, Jos M.;
Garbeva, Paolina

Publication type:

Article

Extracting the GEMs: Genotype, Environment, and Microbiome Interactions Shaping Host Phenotypes.

Published in:

Frontiers in Microbiology, 2021, v. 11, p. N.PAG, doi. 10.3389/fmicb.2020.574053

By:

Oyserman, Ben O.;
Cordovez, Viviane;
Flores, Stalin Sarango;
Leite, Marcio F. A.;
Nijveen, Harm;
Medema, Marnix H.;
Raaijmakers, Jos M.

Publication type:

Article

Towards meaningful scales in ecosystem microbiome research.

Published in:

Environmental Microbiology, 2021, v. 23, n. 1, p. 1, doi. 10.1111/1462-2920.15276

By:

Dini‐Andreote, Francisco;
Kowalchuk, George A.;
Prosser, James I.;
Raaijmakers, Jos M.

Publication type:

Article

Genome-wide analysis of bacterial determinants of plant growth promotion and induced systemic resistance by Pseudomonas fluorescens.

Published in:

Environmental Microbiology, 2017, v. 19, n. 11, p. 4638, doi. 10.1111/1462-2920.13927

By:

Cheng, Xu;
Etalo, Desalegn W.;
van de Mortel, Judith E.;
Dekkers, Ester;
Nguyen, Linh;
Medema, Marnix H.;
Raaijmakers, Jos M.

Publication type:

Article

Living on the edge: emergence of spontaneous gac mutations in Pseudomonas protegens during swarming motility.

Published in:

Environmental Microbiology, 2016, v. 18, n. 10, p. 3453, doi. 10.1111/1462-2920.13288

By:

Song, Chunxu;
Kidarsa, Teresa A.;
van de Mortel, Judith E.;
Loper, Joyce E.;
Raaijmakers, Jos M.

Publication type:

Article

Biosynthetic genes and activity spectrum of antifungal polyynes from C ollimonas fungivorans Ter331.

Published in:

Environmental Microbiology, 2014, v. 16, n. 5, p. 1334, doi. 10.1111/1462-2920.12440

By:

Fritsche, Kathrin;
Berg, Marlies;
Boer, Wietse;
Beek, Teris A.;
Raaijmakers, Jos M.;
Veen, Johannes A.;
Leveau, Johan H. J.

Publication type:

Article

Involvement of the ABC transporter BcAtrB and the laccase BcLCC2 in defence of Botrytis cinerea against the broad-spectrum antibiotic 2,4-diacetylphloroglucinol.

Published in:

Environmental Microbiology, 2008, v. 10, n. 5, p. 1145, doi. 10.1111/j.1462-2920.2007.01531.x

By:

Schouten, Alexander;
Maksimova, Olesya;
Cuesta-Arenas, Yaite;
van den Berg, Grardy;
Raaijmakers, Jos M.

Publication type:

Article

The Rsm regulon of plant growth-promoting P seudomonas fluorescens SS101: role of small RNAs in regulation of lipopeptide biosynthesis.

Published in:

Microbial Biotechnology, 2015, v. 8, n. 2, p. 296, doi. 10.1111/1751-7915.12190

By:

Song, Chunxu;
Voort, Menno;
Mortel, Judith;
Hassan, Karl A.;
Elbourne, Liam D. H.;
Paulsen, Ian T.;
Loper, Joyce E.;
Raaijmakers, Jos M.

Publication type:

Article

DiSCount: computer vision for automated quantification of Striga seed germination.

Published in:

Plant Methods, 2020, v. 16, n. 1, p. 1, doi. 10.1186/s13007-020-00602-8

By:

Masteling, Raul;
Voorhoeve, Lodewijk;
IJsselmuiden, Joris;
Dini-Andreote, Francisco;
de Boer, Wietse;
Raaijmakers, Jos M.

Publication type:

Article

Elucidating the Diversity of Aquatic Microdochium and Trichoderma Species and Their Activity against the Fish Pathogen Saprolegnia diclina.

Published in:

International Journal of Molecular Sciences, 2016, v. 17, n. 1, p. 140, doi. 10.3390/ijms17010140

By:

Yiying Liu;
Zachow, Christin;
Raaijmakers, Jos M.;
de Bruijn, Irene

Publication type:

Article

Genetic, Phenotypic and Metabolic Diversity of Yeasts From Wheat Flag Leaves.

Published in:

Frontiers in Plant Science, 2022, v. 13, p. 1, doi. 10.3389/fpls.2022.908628

By:

Gouka, Linda;
Vogels, Caroline;
Hansen, Lars H.;
Raaijmakers, Jos M.;
Cordovez, Viviane

Publication type:

Article

Current Insights into the Role of Rhizosphere Bacteria in Disease Suppressive Soils.

Published in:

Frontiers in Microbiology, 2017, p. 1, doi. 10.3389/fmicb.2017.02529

By:

Expósito, Ruth Gómez;
de Bruijn, Irene;
Postma, Joeke;
Raaijmakers, Jos M.

Publication type:

Article

Potential for Biocontrol of Hairy Root Disease by a Paenibacillus Clade.

Published in:

Frontiers in Microbiology, 2017, v. 8, p. 1, doi. 10.3389/fmicb.2017.00447

By:

Bosmans, Lien;
De Bruijn, Irene;
Gerards, Saskia;
Moerkens, Rob;
Van Looveren, Lore;
Wittemans, Lieve;
Van Calenberge, Bart;
Paeleman, Anneleen;
Van Kerckhove, Stefan;
De Mot, René;
Rozenski, Jef;
Rediers, Hans;
Raaijmakers, Jos M.;
Lievens, Bart

Publication type:

Article

Editorial: Smelly Fumes: Volatile-Mediated Communication between Bacteria and Other Organisms.

Published in:

2016

By:

Weisskopf, Laure;
Choong-Min Ryu;
Raaijmakers, Jos M.;
Garbeva, Paolina

Publication type:

Editorial

Linking ecology and plant pathology to unravel the importance of soil-borne fungal pathogens in species-rich grasslands.

Published in:

European Journal of Plant Pathology, 2019, v. 154, n. 1, p. 141, doi. 10.1007/s10658-018-1573-x

By:

Ampt, Eline A.;
van Ruijven, Jasper;
Raaijmakers, Jos M.;
Termorshuizen, Aad J.;
Mommer, Liesje

Publication type:

Article

Role of the cyclic lipopeptide massetolide A in biological control of Phytophthora infestans and in colonization of tomato plants by Pseudomonas fluorescens.

Published in:

New Phytologist, 2007, v. 175, n. 4, p. 731, doi. 10.1111/j.1469-8137.2007.02138.x

By:

Tran, Ha;
Ficke, Andrea;
Asiimwe, Theodore;
Höfte, Monica;
Raaijmakers, Jos M.

Publication type:

Article

Fungal volatiles influence plant defence against above‐ground and below‐ground herbivory.

Published in:

Functional Ecology, 2020, v. 34, n. 11, p. 2259, doi. 10.1111/1365-2435.13633

By:

Moisan, Kay;
Aragón, Marcela;
Gort, Gerrit;
Dicke, Marcel;
Cordovez, Viviane;
Raaijmakers, Jos M.;
Lucas‐Barbosa, Dani;
Holeski, Liza

Publication type:

Article

Diversity and Activity of Lysobacter Species from Disease Suppressive Soils.

Published in:

Frontiers in Microbiology, 2015, v. 6, p. 1, doi. 10.3389/fmicb.2015.01243

By:

Expósito, Ruth Gómez;
Postma, Joeke;
Raaijmakers, Jos M.;
De Bruijn, Irene;
Puopolo, Gerardo;
Debode, Jane

Publication type:

Article

Diversity and functions of volatile organic compounds produced by Streptomyces from a disease-suppressive soil.

Published in:

Frontiers in Microbiology, 2015, v. 6, p. 1, doi. 10.3389/fmicb.2015.01081

By:

Cordovez, Viviane;
Carrion, Victor J.;
Etalo, Desalegn W.;
Mumm, Roland;
Hua Zhu;
van Wezel, Gilles P.;
Raaijmakers, Jos M.;
Tarkka, Mika Tapio

Publication type:

Article

Genome mining and metabolic profiling of the rhizosphere bacterium Pseudomonas sp. SH-C52 for antimicrobial compounds.

Published in:

Frontiers in Microbiology, 2015, p. 1, doi. 10.3389/fmicb.2015.00693

By:

Van Der Voort, Menno;
Meijer, Harold J. G.;
Schmidt, Yvonne;
Watrous, Jeramie;
Dekkers, Ester;
Mendes, Rodrigo;
Dorrestein, Pieter C.;
Gross, Harald;
Raaijmakers, Jos M.;
Martín, Marta;
Sattely, Elizabeth;
Matthijs, Sandra

Publication type:

Article

Impact of interspecific interactions on antimicrobial activity among soil bacteria.

Published in:

Frontiers in Microbiology, 2014, v. 5, p. 1, doi. 10.3389/fmicb.2014.00567

By:

Tyc, Olaf;
van den Berg, Marlies;
Gerards, Saskia;
van Veen, Johannes A.;
Raaijmakers, Jos M.;
de Boer, Wietse;
Garbeva, Paolina

Publication type:

Article

bacLIFE: a user-friendly computational workflow for genome analysis and prediction of lifestyle-associated genes in bacteria.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-46302-y

By:

Guerrero-Egido, Guillermo;
Pintado, Adrian;
Bretscher, Kevin M.;
Arias-Giraldo, Luisa-Maria;
Paulson, Joseph N.;
Spaink, Herman P.;
Claessen, Dennis;
Ramos, Cayo;
Cazorla, Francisco M.;
Medema, Marnix H.;
Raaijmakers, Jos M.;
Carrión, Víctor J.

Publication type:

Article

Disentangling soil microbiome functions by perturbation.

Published in:

Environmental Microbiology Reports, 2021, v. 13, n. 5, p. 582, doi. 10.1111/1758-2229.12989

By:

Ossowicki, Adam;
Raaijmakers, Jos M.;
Garbeva, Paolina

Publication type:

Article

Widespread and largely unknown prophage activity, diversity, and function in two genera of wheat phyllosphere bacteria.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2023, v. 17, n. 12, p. 2415, doi. 10.1038/s41396-023-01547-1

By:

Dougherty, Peter Erdmann;
Nielsen, Tue Kjærgaard;
Riber, Leise;
Lading, Helen Helgå;
Forero-Junco, Laura Milena;
Kot, Witold;
Raaijmakers, Jos M.;
Hansen, Lars Hestbjerg

Publication type:

Article

Production of ammonia as a low-cost and long-distance antibiotic strategy by Streptomyces species.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2020, v. 14, n. 2, p. 569, doi. 10.1038/s41396-019-0537-2

By:

Avalos, Mariana;
Garbeva, Paolina;
Raaijmakers, Jos M.;
van Wezel, Gilles P.

Publication type:

Article

Breeding for soil-borne pathogen resistance impacts active rhizosphere microbiome of common bean.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2018, v. 12, n. 12, p. 3038, doi. 10.1038/s41396-018-0234-6

By:

Mendes, Lucas William;
Mendes, Rodrigo;
Raaijmakers, Jos M.;
Tsai, Siu Mui

Publication type:

Article

Involvement of Burkholderiaceae and sulfurous volatiles in disease-suppressive soils.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2018, v. 12, n. 9, p. 2307, doi. 10.1038/s41396-018-0186-x

By:

Carrión, Víctor J.;
Cordovez, Viviane;
Tyc, Olaf;
Etalo, Desalegn W.;
de Bruijn, Irene;
de Jager, Victor C. L.;
Medema, Marnix H.;
Eberl, Leo;
Raaijmakers, Jos M.

Publication type:

Article

Saving seed microbiomes.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2018, v. 12, n. 5, p. 1167, doi. 10.1038/s41396-017-0028-2

By:

Berg, Gabriele;
Raaijmakers, Jos M.

Publication type:

Article

Influence of resistance breeding in common bean on rhizosphere microbiome composition and function.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2018, v. 12, n. 1, p. 212, doi. 10.1038/ismej.2017.158

By:

Mendes, Lucas William;
Raaijmakers, Jos M;
de Hollander, Mattias;
Mendes, Rodrigo;
Tsai, Siu Mui

Publication type:

Article

Linking rhizosphere microbiome composition of wild and domesticated Phaseolus vulgaris to genotypic and root phenotypic traits.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2017, v. 11, n. 10, p. 2244, doi. 10.1038/ismej.2017.85

By:

Pérez-Jaramillo, Juan E;
Carrión, Víctor J;
Bosse, Mirte;
Ferrão, Luiz F V;
de Hollander, Mattias;
Garcia, Antonio A F;
Ramírez, Camilo A;
Mendes, Rodrigo;
Raaijmakers, Jos M

Publication type:

Article

Insect pathogenicity in plant-beneficial pseudomonads: phylogenetic distribution and comparative genomics.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2016, v. 10, n. 10, p. 2527, doi. 10.1038/ismej.2016.5

By:

Flury, Pascale;
Aellen, Nora;
Ruffner, Beat;
Péchy-Tarr, Maria;
Fataar, Shakira;
Metla, Zane;
Dominguez-Ferreras, Ana;
Bloemberg, Guido;
Frey, Joachim;
Goesmann, Alexander;
Raaijmakers, Jos M;
Duffy, Brion;
Höfte, Monica;
Blom, Jochen;
Smits, Theo H M;
Keel, Christoph;
Maurhofer, Monika

Publication type:

Article

Fungal invasion of the rhizosphere microbiome.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2016, v. 10, n. 1, p. 265, doi. 10.1038/ismej.2015.82

By:

Chapelle, Emilie;
Mendes, Rodrigo;
Bakker, Peter A HM;
Raaijmakers, Jos M

Publication type:

Article

Cross-kingdom similarities in microbiome functions.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2015, v. 9, n. 9, p. 1905, doi. 10.1038/ismej.2015.7

By:

Mendes, Rodrigo;
Raaijmakers, Jos M

Publication type:

Article