Works by Röst, Hannes L.

Results: 19

Amino acid and lipid metabolism in post-gestational diabetes and progression to type 2 diabetes: A metabolic profiling study.

Published in:

2020

By:

Lai, Mi;
Liu, Ying;
Ronnett, Gabriele V.;
Wu, Anne;
Cox, Brian J.;
Dai, Feihan F.;
Röst, Hannes L.;
Gunderson, Erica P.;
Wheeler, Michael B.

Publication type:

journal article

Machine Learning in Mass Spectrometric Analysis of DIA Data.

Published in:

Proteomics, 2020, v. 20, n. 21/22, p. 1, doi. 10.1002/pmic.201900352

By:

Xu, Leon L.;
Young, Adamo;
Zhou, Audrina;
Röst, Hannes L.

Publication type:

Article

Achieving quantitative reproducibility in label-free multisite DIA experiments through multirun alignment.

Published in:

Communications Biology, 2023, v. 6, n. 1, p. 1, doi. 10.1038/s42003-023-05437-2

By:

Gupta, Shubham;
Sing, Justin C.;
Röst, Hannes L.

Publication type:

Article

Quantitative proteomics: challenges and opportunities in basic and applied research.

Published in:

Nature Protocols, 2017, v. 12, n. 7, p. 1289, doi. 10.1038/nprot.2017.040

By:

Schubert, Olga T;
Röst, Hannes L;
Collins, Ben C;
Rosenberger, George;
Aebersold, Ruedi

Publication type:

Article

Rapid mass spectrometric conversion of tissue biopsy samples into permanent quantitative digital proteome maps.

Published in:

Nature Medicine, 2015, v. 21, n. 4, p. 407, doi. 10.1038/nm.3807

By:

Guo, Tiannan;
Kouvonen, Petri;
Koh, Ching Chiek;
Gillet, Ludovic C;
Wolski, Witold E;
Röst, Hannes L;
Rosenberger, George;
Collins, Ben C;
Blum, Lorenz C;
Gillessen, Silke;
Joerger, Markus;
Jochum, Wolfram;
Aebersold, Ruedi

Publication type:

Article

Intensive lactation among women with recent gestational diabetes significantly alters the early postpartum circulating lipid profile: the SWIFT study.

Published in:

2021

By:

Zhang, Ziyi;
Lai, Mi;
Piro, Anthony L.;
Alexeeff, Stacey E.;
Allalou, Amina;
Röst, Hannes L.;
Dai, Feihan F.;
Wheeler, Michael B.;
Gunderson, Erica P.

Publication type:

journal article

Quantifying protein interaction dynamics by SWATH mass spectrometry: application to the 14-3-3 system.

Published in:

Nature Methods, 2013, v. 10, n. 12, p. 1246, doi. 10.1038/nmeth.2703

By:

Collins, Ben C;
Gillet, Ludovic C;
Rosenberger, George;
Röst, Hannes L;
Vichalkovski, Anton;
Gstaiger, Matthias;
Aebersold, Ruedi

Publication type:

Article

Publisher Correction: OpenSWATH enables automated, targeted analysis of data-independent acquisition MS data.

Published in:

2020

By:

Röst, Hannes L.;
Rosenberger, George;
Navarro, Pedro;
Gillet, Ludovic;
Miladinović, Saša M.;
Schubert, Olga T.;
Wolski, Witold;
Collins, Ben C.;
Malmström, Johan;
Malmström, Lars;
Aebersold, Ruedi

Publication type:

Correction Notice

Inference and quantification of peptidoforms in large sample cohorts by SWATH-MS.

Published in:

Nature Biotechnology, 2017, v. 35, n. 8, p. 781, doi. 10.1038/nbt.3908

By:

Rosenberger, George;
Liu, Yansheng;
Röst, Hannes L;
Ludwig, Christina;
Buil, Alfonso;
Bensimon, Ariel;
Soste, Martin;
Spector, Tim D;
Dermitzakis, Emmanouil T;
Collins, Ben C;
Malmström, Lars;
Aebersold, Ruedi

Publication type:

Article

A multicenter study benchmarks software tools for label-free proteome quantification.

Published in:

Nature Biotechnology, 2016, v. 34, n. 11, p. 1130, doi. 10.1038/nbt.3685

By:

Navarro, Pedro;
Kuharev, Jörg;
Gillet, Ludovic C;
Bernhardt, Oliver M;
MacLean, Brendan;
Röst, Hannes L;
Tate, Stephen A;
Tsou, Chih-Chiang;
Reiter, Lukas;
Distler, Ute;
Rosenberger, George;
Perez-Riverol, Yasset;
Nesvizhskii, Alexey I;
Aebersold, Ruedi;
Tenzer, Stefan

Publication type:

Article

OpenSWATH enables automated, targeted analysis of data-independent acquisition MS data.

Published in:

Nature Biotechnology, 2014, v. 32, n. 3, p. 219, doi. 10.1038/nbt.2841

By:

Röst, Hannes L;
Rosenberger, George;
Navarro, Pedro;
Gillet, Ludovic;
Miladinović, Saša M;
Schubert, Olga T;
Wolski, Witold;
Collins, Ben C;
Malmström, Johan;
Malmström, Lars;
Aebersold, Ruedi

Publication type:

Article

pyOpenMS: A Python-based interface to the OpenMS mass-spectrometry algorithm library.

Published in:

Proteomics, 2014, v. 14, n. 1, p. 74, doi. 10.1002/pmic.201300246

By:

Röst, Hannes L.;
Schmitt, Uwe;
Aebersold, Ruedi;
Malmström, Lars

Publication type:

Article

BioContainers: an open-source and community-driven framework for software standardization.

Published in:

Bioinformatics, 2017, v. 33, n. 16, p. 2580, doi. 10.1093/bioinformatics/btx192

By:

Leprevost, Felipe da Veiga;
Grüning, Björn A.;
Aflitos, Saulo Alves;
Röst, Hannes L.;
Uszkoreit, Julian;
Barsnes, Harald;
Vaudel, Marc;
Moreno, Pablo;
Gatto, Laurent;
Weber, Jonas;
Mingze Bai;
Jimenez, Rafael C.;
Sachsenberg, Timo;
Pfeuffer, Julianus;
Alvarez, Roberto Vera;
Griss, Johannes;
Nesvizhskii, Alexey I.;
Perez-Riverol, Yasset

Publication type:

Article

Efficient visualization of high-throughput targeted proteomics experiments: TAPIR.

Published in:

2015

By:

Röst, Hannes L.;
Rosenberger, George;
Aebersold, Ruedi;
Malmström, Lars

Publication type:

Product Review

DIANA—algorithmic improvements for analysis of data-independent acquisition MS data.

Published in:

Bioinformatics, 2015, v. 31, n. 4, p. 555, doi. 10.1093/bioinformatics/btu686

By:

Teleman, Johan;
Röst, Hannes L;
Rosenberger, George;
Schmitt, Uwe;
Malmström, Lars;
Malmström, Johan;
Levander, Fredrik

Publication type:

Article

aLFQ: an R-package for estimating absolute protein quantities from label-free LC-MS/MS proteomics data.

Published in:

2014

By:

Rosenberger, George;
Ludwig, Christina;
Röst, Hannes L.;
Aebersold, Ruedi;
Malmström, Lars

Publication type:

Product Review

Longitudinal cytokine and multi-modal health data of an extremely severe ME/CFS patient with HSD reveals insights into immunopathology, and disease severity.

Published in:

Frontiers in Immunology, 2024, p. 1, doi. 10.3389/fimmu.2024.1369295

By:

Jahanbani, Fereshteh;
Sing, Justin Cyril;
Maynard, Rajan Douglas;
Jahanbani, Shaghayegh;
Dafoe, Janet;
Dafoe, Whitney;
Jones, Nathan;
Wallace, Kelvin J.;
Rastan, Azuravesta;
Maecker, Holden T.;
Röst, Hannes L.;
Snyder, Michael P.;
Davis, Ronald W.

Publication type:

Article

Fast and Efficient XML Data Access for Next-Generation Mass Spectrometry.

Published in:

PLoS ONE, 2015, v. 10, n. 4, p. 1, doi. 10.1371/journal.pone.0125108

By:

Röst, Hannes L.;
Schmitt, Uwe;
Aebersold, Ruedi;
Malmström, Lars

Publication type:

Article

DIAMetAlyzer allows automated false-discovery rate-controlled analysis for data-independent acquisition in metabolomics.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-29006-z

By:

Alka, Oliver;
Shanthamoorthy, Premy;
Witting, Michael;
Kleigrewe, Karin;
Kohlbacher, Oliver;
Röst, Hannes L.

Publication type:

Article