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Unusual Ebola Virus Chain of Transmission, Conakry, Guinea, 2014-2015.
Published in:
2016
By:
- Mory Keita;
- Duraffour, Sophie;
- Loman, Nicholas J.;
- Rambaut, Andrew;
- Diallo, Boubacar;
- Magassouba, Nfaly;
- Carroll, Miles W.;
- Quick, Joshua;
- Sall, Amadou A.;
- Glynn, Judith R.;
- Formenty, Pierre;
- Subissi, Lorenzo;
- Faye, Ousmane;
- Keita, Mory
Publication type:
journal article
Genomic epidemiology of human adenovirus F40 and F41 in coastal Kenya: A retrospective hospital-based surveillance study (2013–2022).
Published in:
Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead023
By:
- Lambisia, Arnold W.;
- Makori, Timothy O.;
- Mutunga, Martin;
- Cheruiyot, Robinson;
- Murunga, Nickson;
- Quick, Joshua;
- Githinji, George;
- James Nokes, D.;
- Houldcroft, Charlotte J.;
- Agoti, Charles N.
Publication type:
Article
A complete bacterial genome assembled de novo using only nanopore sequencing data.
Published in:
Nature Methods, 2015, v. 12, n. 8, p. 733, doi. 10.1038/nmeth.3444
By:
- Loman, Nicholas J;
- Quick, Joshua;
- Simpson, Jared T
Publication type:
Article
Binning metagenomic contigs by coverage and composition.
Published in:
Nature Methods, 2014, v. 11, n. 11, p. 1144, doi. 10.1038/nmeth.3103
By:
- Alneberg, Johannes;
- Bjarnason, Brynjar Smári;
- de Bruijn, Ino;
- Schirmer, Melanie;
- Quick, Joshua;
- Ijaz, Umer Z;
- Lahti, Leo;
- Loman, Nicholas J;
- Andersson, Anders F;
- Quince, Christopher
Publication type:
Article
Ultra-deep, long-read nanopore sequencing of mock microbial community standards.
Published in:
GigaScience, 2019, v. 8, n. 5, p. N.PAG, doi. 10.1093/gigascience/giz043
By:
- Nicholls, Samuel M;
- Quick, Joshua C;
- Tang, Shuiquan;
- Loman, Nicholas J
Publication type:
Article
Field investigation with real-time virus genetic characterisation support of a cluster of Ebola virus disease cases in Dubréka, Guinea, April to June 2015.
Published in:
Eurosurveillance (15607917), 2018, v. 23, n. 12, p. 1, doi. 0.2807/1560-7917.ES.2018.23.12.17-00140
By:
- Fini, Alessandro;
- Zomahoun, Delayo;
- Duraffour, Sophie;
- Derrough, Tarik;
- Charles, Myrna;
- Quick, Joshua;
- Loman, Nick;
- Cowley, Lauren;
- Leno, Mamadou;
- Ouedraogo, Nobila;
- Thiam, Oumou;
- Hernández-Romieu, Alfonso;
- Iko, Annie;
- Halimatou Keita;
- Konate, Djiba;
- Soumah, Aboubacar Aboubak;
- Bouchouar, Etran;
- Ileka-Friouzeau, Samuel;
- Keita, Sakoba;
- Diallo, Boubacar
Publication type:
Article
Eighteenth-century genomes show that mixed infections were common at time of peak tuberculosis in Europe.
Published in:
Nature Communications, 2015, v. 6, n. 4, p. 6717, doi. 10.1038/ncomms7717
By:
- Kay, Gemma L.;
- Sergeant, Martin J.;
- Zhou, Zhemin;
- Chan, Jacqueline Z.-M.;
- Millard, Andrew;
- Quick, Joshua;
- Szikossy, Ildikó;
- Pap, Ildikó;
- Spigelman, Mark;
- Loman, Nicholas J.;
- Achtman, Mark;
- Donoghue, Helen D.;
- Pallen, Mark J.
Publication type:
Article
Rapid draft sequencing and real-time nanopore sequencing in a hospital outbreak of Salmonella.
Published in:
Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0677-2
By:
- Quick, Joshua;
- Ashton, Philip;
- Calus, Szymon;
- Chatt, Carole;
- Gossain, Savita;
- Hawker, Jeremy;
- Nair, Satheesh;
- Neal, Keith;
- Nye, Kathy;
- Peters, Tansy;
- Pinna, Elizabeth De;
- Robinson, Esther;
- Struthers, Keith;
- Webber, Mark;
- Catto, Andrew;
- Dallman, Timothy J.;
- Hawkey, Peter;
- Loman, Nicholas J.
Publication type:
Article
A Pandemic of Busywork: Increased Online Coursework Following the Transition to Remote Instruction is Associated with Reduced Academic Achievement.
Published in:
Online Learning, 2021, v. 25, n. 1, p. 70, doi. 10.24059/olj.v25i1.2475
By:
- Motz, Benjamin A.;
- Quick, Joshua D.;
- Wernert, Julie A.;
- Miles, Tonya A.
Publication type:
Article
Importation and early local transmission of COVID-19 in Brazil, 2020.
Published in:
Revista do Instituto de Medicina Tropical de São Paulo, 2020, v. 62, p. 1, doi. 10.1590/S1678-9946202062030
By:
- de Jesus, Jaqueline Goes;
- Sacchi, Claudio;
- da Silva Candido, Darlan;
- Claro, Ingra Morales;
- Silva Sales, Flávia Cristina;
- Manuli, Erika Regina;
- Borges da Silva, Daniela Bernardes;
- de Paiva, Terezinha Maria;
- Benega Pinho, Margarete Aparecida;
- de Oliveira Santos, Katia Correa;
- Hill, Sarah Catherine;
- Aguiar, Renato Santana;
- Romero, Filipe;
- Pereira dos Santos, Fabiana Cristina;
- Gonçalves, Claudia Regina;
- do Carmo Timenetsky, Maria;
- Quick, Joshua;
- Rosa Croda, Julio Henrique;
- de Oliveira, Wanderson;
- Rambaut, Andrew
Publication type:
Article
Human-Centered AI to Support an Adaptive Management of Human-Machine Transitions with Vehicle Automation.
Published in:
Information (2078-2489), 2021, v. 12, n. 1, p. 13, doi. 10.3390/info12010013
By:
- Bellet, Thierry;
- Banet, Aurélie;
- Petiot, Marie;
- Richard, Bertrand;
- Quick, Joshua
Publication type:
Article
An amplicon-based sequencing framework for accurately measuring intrahost virus diversity using PrimalSeq and iVar.
Published in:
Genome Biology, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1618-7
By:
- Grubaugh, Nathan D.;
- Gangavarapu, Karthik;
- Quick, Joshua;
- Matteson, Nathaniel L.;
- De Jesus, Jaqueline Goes;
- Main, Bradley J.;
- Tan, Amanda L.;
- Paul, Lauren M.;
- Brackney, Doug E.;
- Grewal, Saran;
- Gurfield, Nikos;
- Van Rompay, Koen K. A.;
- Isern, Sharon;
- Michael, Scott F.;
- Coffey, Lark L.;
- Loman, Nicholas J.;
- Andersen, Kristian G.
Publication type:
Article
A Culture-Independent Sequence-Based Metagenomics Approach to the Investigation of an Outbreak of Shiga-Toxigenic Escherichia coli O104:H4.
Published in:
JAMA: Journal of the American Medical Association, 2013, v. 309, n. 14, p. 1502, doi. 10.1001/jama.2013.3231
By:
- Loman, Nicholas J.;
- Constantinidou, Chrystala;
- Christner, Martin;
- Rohde, Holger;
- Chan, Jacqueline Z.-M.;
- Quick, Joshua;
- Weir, Jacqueline C.;
- Quince, Christopher;
- Smith, Geoffrey P.;
- Betley, Jason R.;
- Aepfelbacher, Martin;
- Pallen, Mark J.
Publication type:
Article
Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples.
Published in:
Nature Protocols, 2017, v. 12, n. 6, p. 1261, doi. 10.1038/nprot.2017.066
By:
- Quick, Joshua;
- Grubaugh, Nathan D;
- Pullan, Steven T;
- Claro, Ingra M;
- Smith, Andrew D;
- Gangavarapu, Karthik;
- Oliveira, Glenn;
- Robles-Sikisaka, Refugio;
- Rogers, Thomas F;
- Beutler, Nathan A;
- Burton, Dennis R;
- Lewis-Ximenez, Lia Laura;
- de Jesus, Jaqueline Goes;
- Giovanetti, Marta;
- Hill, Sarah C;
- Black, Allison;
- Bedford, Trevor;
- Carroll, Miles W;
- Nunes, Marcio;
- Alcantara, Luiz Carlos Jr.
Publication type:
Article
Genomic Surveillance of Yellow Fever Virus Epizootic in São Paulo, Brazil, 2016 – 2018.
Published in:
PLoS Pathogens, 2020, v. 16, n. 8, p. 1, doi. 10.1371/journal.ppat.1008699
By:
- Hill, Sarah C.;
- de Souza, Renato;
- Thézé, Julien;
- Claro, Ingra;
- Aguiar, Renato S.;
- Abade, Leandro;
- Santos, Fabiana C. P.;
- Cunha, Mariana S.;
- Nogueira, Juliana S.;
- Salles, Flavia C. S.;
- Rocco, Iray M.;
- Maeda, Adriana Y.;
- Vasami, Fernanda G. S.;
- du Plessis, Louis;
- Silveira, Paola P.;
- de Jesus, Jaqueline G.;
- Quick, Joshua;
- Fernandes, Natália C. C. A.;
- Guerra, Juliana M.;
- Réssio, Rodrigo A.
Publication type:
Article

Found: 15