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SNOW: Standard NOmenclature Wizard to help searching for (bio) chemical standardized names.
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- Bioinformatics, 2003, v. 19, n. 18, p. 2492, doi. 10.1093/bioinformatics/btg355
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TranScout: prediction of gene expression regulatory proteins from their sequences.
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- Bioinformatics, 2002, v. 18, n. 4, p. 597, doi. 10.1093/bioinformatics/18.4.597
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ASAP: analysis of peptide composition.
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- Bioinformatics, 2000, v. 16, n. 12, p. 1153, doi. 10.1093/bioinformatics/16.12.1153
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Role of Moonlighting Proteins in Disease: Analyzing the Contribution of Canonical and Moonlighting Functions in Disease Progression.
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- Cells (2073-4409), 2023, v. 12, n. 2, p. 235, doi. 10.3390/cells12020235
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How hydrophobicity shapes the architecture of protein assemblies.
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- European Physical Journal E -- Soft Matter, 2023, v. 46, n. 7, p. 1, doi. 10.1140/epje/s10189-023-00320-8
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Gene Ontology Function prediction in Mollicutes using Protein-Protein Association Networks.
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- BMC Systems Biology, 2011, v. 5, n. 1, p. 49, doi. 10.1186/1752-0509-5-49
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DockAnalyse: an application for the analysis of protein-protein interactions.
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- BMC Structural Biology, 2010, v. 10, p. 37, doi. 10.1186/1472-6807-10-37
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Can bioinformatics help in the identification of moonlighting proteins?
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- Biochemical Society Transactions, 2014, v. 42, n. 6, p. 1692, doi. 10.1042/BST20140241
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Use of vector formalism in the analysis of hydrophobic and electric driving forces in biological assemblies.
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- Quarterly Reviews of Biophysics, 2022, v. 55, p. 1, doi. 10.1017/S0033583522000038
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- Article
Structure-Guided Mutations in the Terminal Organelle Protein MG491 Cause Major Motility and Morphologic Alterations on Mycoplasma genitalium.
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- PLoS Pathogens, 2016, v. 12, n. 4, p. 1, doi. 10.1371/journal.ppat.1005533
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Cryo‐electron tomography analyses of terminal organelle mutants suggest the motility mechanism of <italic>Mycoplasma genitalium</italic>.
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- Molecular Microbiology, 2018, v. 108, n. 3, p. 319, doi. 10.1111/mmi.13938
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Structural characterization of the NAP; the major adhesion complex of the human pathogen Mycoplasma genitalium.
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- Molecular Microbiology, 2017, v. 105, n. 6, p. 869, doi. 10.1111/mmi.13743
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A minimized motile machinery for Mycoplasma genitalium.
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- Molecular Microbiology, 2016, v. 100, n. 1, p. 125, doi. 10.1111/mmi.13305
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The EAGR box structure: a motif involved in mycoplasma motility.
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- Molecular Microbiology, 2012, v. 86, n. 2, p. 382, doi. 10.1111/j.1365-2958.2012.08200.x
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- Article
Cell division in a minimal bacterium in the absence of ftsZ.
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- Molecular Microbiology, 2010, v. 78, n. 2, p. 278, doi. 10.1111/j.1365-2958.2010.07306.x
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- Article
Deletion of the Mycoplasma genitalium MG_217 gene modifies cell gliding behaviour by altering terminal organelle curvature.
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- Molecular Microbiology, 2008, v. 69, n. 4, p. 1029, doi. 10.1111/j.1365-2958.2008.06343.x
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Mycoplasma genitalium mg200 and mg386 genes are involved in gliding motility but not in cytadherence.
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- Molecular Microbiology, 2006, v. 60, n. 6, p. 1509, doi. 10.1111/j.1365-2958.2006.05187.x
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Structural similarity to link sequence space: New potential superfamilies and implications for structural genomics.
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- Protein Science: A Publication of the Protein Society, 2002, v. 11, n. 5, p. 1101, doi. 10.1110/ps.3950102
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ANALYSIS OF NONLINEAR RELATIONS BETWEEN EXPRESSION PROFILES BY THE PRINCIPAL CURVES OF ORIENTED-POINTS APPROACH.
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- Journal of Bioinformatics & Computational Biology, 2008, v. 6, n. 2, p. 367, doi. 10.1142/S0219720008003394
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- Article
Mycoplasma genitalium adhesin P110 binds sialic-acid human receptors.
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- Nature Communications, 2018, v. 9, p. 1, doi. 10.1038/s41467-018-06963-y
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Analysis of protein conformational characteristics related to thermostability.
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- Protein Engineering, 1996, v. 9, n. 3, p. 265, doi. 10.1093/protein/9.3.265
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Activation of σ20-dependent recombination and horizontal gene transfer in Mycoplasma genitalium.
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- DNA Research, 2018, v. 25, n. 4, p. 383, doi. 10.1093/dnares/dsy011
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PCOPGene-Net: Holistic Characterisation of cellular states from microarray data based on continuous and non-continuous analysis of gene-expression relationships.
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- BMC Bioinformatics, 2009, v. 10, p. 1, doi. 10.1186/1471-2105-10-138
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Prediction of enzyme function by combining sequence similarity and protein interactions.
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- BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-249
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Bioinformatics Annotation of the Hypothetical Proteins Found by Omics Techniques Can Help to Disclose Additional Virulence Factors.
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- Current Microbiology, 2009, v. 59, n. 4, p. 451, doi. 10.1007/s00284-009-9459-y
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A Model of Protein Association Based on Their Hydrophobic and Electric Interactions.
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- PLoS ONE, 2014, v. 9, n. 10, p. 1, doi. 10.1371/journal.pone.0110352
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Quantitative Assessment of <i>Mycoplasma</i> Hemadsorption Activity by Flow Cytometry.
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- PLoS ONE, 2014, v. 9, n. 1, p. 1, doi. 10.1371/journal.pone.0087500
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Structural Characterization of the Enzymes Composing the Arginine Deiminase Pathway in Mycoplasma penetrans.
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- PLoS ONE, 2012, v. 7, n. 10, p. 1, doi. 10.1371/journal.pone.0047886
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P110 and P140 Cytadherence-Related Proteins Are Negative Effectors of Terminal Organelle Duplication in Mycoplasma genitalium.
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- PLoS ONE, 2009, v. 4, n. 10, p. 1, doi. 10.1371/journal.pone.0007452
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- Article
Borboletas (Lepidoptera: Papilionoidea e Hesperioidea) do Sudoeste do Pampa Brasileiro, Uruguaiana, Rio Grande do Sul, Brasil.
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- Biota Neotropica, 2011, v. 11, n. 1, p. 355, doi. 10.1590/S1676-06032011000100032
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Multifunctional Proteins: Involvement in Human Diseases and Targets of Current Drugs.
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- Protein Journal, 2018, v. 37, n. 5, p. 444, doi. 10.1007/s10930-018-9790-x
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Pathogen Moonlighting Proteins: From Ancestral Key Metabolic Enzymes to Virulence Factors.
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- Microorganisms, 2021, v. 9, n. 6, p. 1300, doi. 10.3390/microorganisms9061300
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Functional Characterization of the Cell Division Gene Cluster of the Wall-less Bacterium Mycoplasma genitalium.
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- Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.695572
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Prediction of the conformation and geometry of loops in globular proteins: Testing ArchDB, a structural classification of loops.
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- Proteins, 2005, v. 60, n. 4, p. 746, doi. 10.1002/prot.20516
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Classification of common functional loops of kinase super-families.
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- Proteins, 2004, v. 56, n. 3, p. 539, doi. 10.1002/prot.20136
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A novel sigma factor reveals a unique regulon controlling cell-specific recombination in Mycoplasma genitalium.
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- Nucleic Acids Research, 2015, v. 43, n. 10, p. 4923, doi. 10.1093/nar/gkv422
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MultitaskProtDB: a database of multitasking proteins.
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- Nucleic Acids Research, 2014, v. 42, n. D1, p. D517
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Structures of scrambled disulfide forms of the potato carboxypeptidase inhibitor predicted by molecular dynamics simulations with constraints.
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- Proteins, 2000, v. 40, n. 3, p. 482, doi. 10.1002/1097-0134(20000815)40:3<482::AID-PROT150>3.0.CO;2-5
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Modelling repressor proteins docking to DNA.
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- Proteins, 1998, v. 33, n. 4, p. 535, doi. 10.1002/(SICI)1097-0134(19981201)33:4<535::AID-PROT6>3.0.CO;2-D
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On the sensitivity of MD trajectories to changes in water-protein interaction parameters: The potato carboxypeptidase inhibitor in water as a test case for the GROMOS force field.
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- Proteins, 1996, v. 25, n. 1, p. 89, doi. 10.1002/(SICI)1097-0134(199605)25:1<89::AID-PROT7>3.0.CO;2-F
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Identification of function-associated loop motifs and application to protein function prediction.
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- Bioinformatics, 2006, v. 22, n. 18, p. 2237, doi. 10.1093/bioinformatics/btl382
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ArchDB: automated protein loop classification as a tool for structural genomics.
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- Nucleic Acids Research, 2004, v. 32, n. suppl 1, p. d185
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TrSDB: a proteome database of transcription factors.
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- Nucleic Acids Research, 2004, v. 32, n. suppl 1, p. d171
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Structure and mechanism of the Nap adhesion complex from the human pathogen Mycoplasma genitalium.
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- Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-16511-2
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A protein self-assembly model guided by electrostatic and hydrophobic dipole moments.
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- PLoS ONE, 2019, v. 14, n. 4, p. 1, doi. 10.1371/journal.pone.0216253
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NCR-PCOPGene: An Exploratory Tool for Analysis of Sample-Classes Effect on Gene-Expression Relationships.
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- Advances in Bioinformatics, 2008, p. 1, doi. 10.1155/2008/789026
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The importance of hydrophobic interactions in the structure of transcription systems.
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- European Biophysics Journal, 2021, v. 50, n. 7, p. 951, doi. 10.1007/s00249-021-01557-x
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Vector description of electric and hydrophobic interactions in protein homodimers.
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- European Biophysics Journal, 2016, v. 45, n. 4, p. 341, doi. 10.1007/s00249-015-1100-3
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- Article