Works by Qiu, Xintao

Results: 13

Integrative analyses of single-cell transcriptome and regulome using MAESTRO.
Published in:
Genome Biology, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s13059-020-02116-x
By:
- Wang, Chenfei;
- Sun, Dongqing;
- Huang, Xin;
- Wan, Changxin;
- Li, Ziyi;
- Han, Ya;
- Qin, Qian;
- Fan, Jingyu;
- Qiu, Xintao;
- Xie, Yingtian;
- Meyer, Clifford A.;
- Brown, Myles;
- Tang, Ming;
- Long, Henry;
- Liu, Tao;
- Liu, X. Shirley
Publication type:
Article
Tutorial: integrative computational analysis of bulk RNA-sequencing data to characterize tumor immunity using RIMA.
Published in:
Nature Protocols, 2023, v. 18, n. 8, p. 2404, doi. 10.1038/s41596-023-00841-8
By:
- Yang, Lin;
- Wang, Jin;
- Altreuter, Jennifer;
- Jhaveri, Aashna;
- Wong, Cheryl J.;
- Song, Li;
- Fu, Jingxin;
- Taing, Len;
- Bodapati, Sudheshna;
- Sahu, Avinash;
- Tokheim, Collin;
- Zhang, Yi;
- Zeng, Zexian;
- Bai, Gali;
- Tang, Ming;
- Qiu, Xintao;
- Long, Henry W.;
- Michor, Franziska;
- Liu, Yang;
- Liu, X. Shirley
Publication type:
Article
MYC drives aggressive prostate cancer by disrupting transcriptional pause release at androgen receptor targets.
Published in:
Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-30257-z
By:
- Qiu, Xintao;
- Boufaied, Nadia;
- Hallal, Tarek;
- Feit, Avery;
- de Polo, Anna;
- Luoma, Adrienne M.;
- Alahmadi, Walaa;
- Larocque, Janie;
- Zadra, Giorgia;
- Xie, Yingtian;
- Gu, Shengqing;
- Tang, Qin;
- Zhang, Yi;
- Syamala, Sudeepa;
- Seo, Ji-Heui;
- Bell, Connor;
- O'Connor, Edward;
- Liu, Yang;
- Schaeffer, Edward M.;
- Jeffrey Karnes, R.
Publication type:
Article
Subtype heterogeneity and epigenetic convergence in neuroendocrine prostate cancer.
Published in:
Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-26042-z
By:
- Cejas, Paloma;
- Xie, Yingtian;
- Font-Tello, Alba;
- Lim, Klothilda;
- Syamala, Sudeepa;
- Qiu, Xintao;
- Tewari, Alok K.;
- Shah, Neel;
- Nguyen, Holly M.;
- Patel, Radhika A.;
- Brown, Lisha;
- Coleman, Ilsa;
- Hackeng, Wenzel M.;
- Brosens, Lodewijk;
- Dreijerink, Koen M. A.;
- Ellis, Leigh;
- Alaiwi, Sarah Abou;
- Seo, Ji-Heui;
- Baca, Sylvan;
- Beltran, Himisha
Publication type:
Article
Gene regulatory network construction identified NFYA as a diffuse subtype-specific prognostic factor in gastric cancer.
Published in:
International Journal of Oncology, 2018, v. 53, n. 5, p. 1857, doi. 10.3892/ijo.2018.4519
By:
- Cao, Bin;
- Zhao, Yu;
- Zhang, Zheng;
- Li, Hengcun;
- Xing, Jie;
- Guo, Shuilong;
- Qiu, Xintao;
- Zhang, Shutian;
- Min, Li;
- Zhu, Shengtao
Publication type:
Article
Androgen receptor reprogramming demarcates prognostic, context-dependent gene sets in primary and metastatic prostate cancer.
Published in:
Clinical Epigenetics, 2022, v. 14, n. 1, p. 1, doi. 10.1186/s13148-022-01278-8
By:
- Severson, Tesa;
- Qiu, Xintao;
- Alshalalfa, Mohammed;
- Sjöström, Martin;
- Quigley, David;
- Bergman, Andries;
- Long, Henry;
- Feng, Felix;
- Freedman, Matthew L.;
- Zwart, Wilbert;
- Pomerantz, Mark M.
Publication type:
Article
Comprehensive genomic characterization of HER2-low and HER2-0 breast cancer.
Published in:
Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-43324-w
By:
- Tarantino, Paolo;
- Gupta, Hersh;
- Hughes, Melissa E.;
- Files, Janet;
- Strauss, Sarah;
- Kirkner, Gregory;
- Feeney, Anne-Marie;
- Li, Yvonne;
- Garrido-Castro, Ana C.;
- Barroso-Sousa, Romualdo;
- Bychkovsky, Brittany L.;
- DiLascio, Simona;
- Sholl, Lynette;
- MacConaill, Laura;
- Lindeman, Neal;
- Johnson, Bruce E.;
- Meyerson, Matthew;
- Jeselsohn, Rinath;
- Qiu, Xintao;
- Li, Rong
Publication type:
Article
Author Correction: Comprehensive genomic characterization of HER2-low and HER2-0 breast cancer.
Published in:
2023
By:
- Tarantino, Paolo;
- Gupta, Hersh;
- Hughes, Melissa E.;
- Files, Janet;
- Strauss, Sarah;
- Kirkner, Gregory;
- Feeney, Anne-Marie;
- Li, Yvonne;
- Garrido-Castro, Ana C.;
- Barroso-Sousa, Romualdo;
- Bychkovsky, Brittany L.;
- DiLascio, Simona;
- Sholl, Lynette;
- MacConaill, Laura;
- Lindeman, Neal;
- Johnson, Bruce E.;
- Meyerson, Matthew;
- Jeselsohn, Rinath;
- Qiu, Xintao;
- Li, Rong
Publication type:
Correction Notice
Comprehensive genomic characterization of HER2-low and HER2-0 breast cancer.
Published in:
Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-43324-w
By:
- Tarantino, Paolo;
- Gupta, Hersh;
- Hughes, Melissa E.;
- Files, Janet;
- Strauss, Sarah;
- Kirkner, Gregory;
- Feeney, Anne-Marie;
- Li, Yvonne;
- Garrido-Castro, Ana C.;
- Barroso-Sousa, Romualdo;
- Bychkovsky, Brittany L.;
- DiLascio, Simona;
- Sholl, Lynette;
- MacConaill, Laura;
- Lindeman, Neal;
- Johnson, Bruce E.;
- Meyerson, Matthew;
- Jeselsohn, Rinath;
- Qiu, Xintao;
- Li, Rong
Publication type:
Article
Perturbed myoepithelial cell differentiation in BRCA mutation carriers and in ductal carcinoma in situ.
Published in:
Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-12125-5
By:
- Ding, Lina;
- Su, Ying;
- Fassl, Anne;
- Hinohara, Kunihiko;
- Qiu, Xintao;
- Harper, Nicholas W.;
- Huh, Sung Jin;
- Bloushtain-Qimron, Noga;
- Jovanović, Bojana;
- Ekram, Muhammad;
- Zi, Xiaoyuan;
- Hines, William C.;
- Alečković, Maša;
- Gil del Alcazar, Carlos;
- Caulfield, Ryan J.;
- Bonal, Dennis M.;
- Nguyen, Quang-De;
- Merino, Vanessa F.;
- Choudhury, Sibgat;
- Ethington, Gabrielle
Publication type:
Article
Perturbed myoepithelial cell differentiation in BRCA mutation carriers and in ductal carcinoma in situ.
Published in:
Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-12125-5
By:
- Ding, Lina;
- Su, Ying;
- Fassl, Anne;
- Hinohara, Kunihiko;
- Qiu, Xintao;
- Harper, Nicholas W.;
- Huh, Sung Jin;
- Bloushtain-Qimron, Noga;
- Jovanović, Bojana;
- Ekram, Muhammad;
- Zi, Xiaoyuan;
- Hines, William C.;
- Alečković, Maša;
- Gil del Alcazar, Carlos;
- Caulfield, Ryan J.;
- Bonal, Dennis M.;
- Nguyen, Quang-De;
- Merino, Vanessa F.;
- Choudhury, Sibgat;
- Ethington, Gabrielle
Publication type:
Article
Reprogramming of the FOXA1 cistrome in treatment-emergent neuroendocrine prostate cancer.
Published in:
Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-22139-7
By:
- Baca, Sylvan C.;
- Takeda, David Y.;
- Seo, Ji-Heui;
- Hwang, Justin;
- Ku, Sheng Yu;
- Arafeh, Rand;
- Arnoff, Taylor;
- Agarwal, Supreet;
- Bell, Connor;
- O'Connor, Edward;
- Qiu, Xintao;
- Alaiwi, Sarah Abou;
- Corona, Rosario I.;
- Fonseca, Marcos A. S.;
- Giambartolomei, Claudia;
- Cejas, Paloma;
- Lim, Klothilda;
- He, Monica;
- Sheahan, Anjali;
- Nassar, Amin
Publication type:
Article
VIPER: Visualization Pipeline for RNA-seq, a Snakemake workflow for efficient and complete RNA-seq analysis.
Published in:
BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2139-9
By:
- Cornwell, MacIntosh;
- Vangala, Mahesh;
- Taing, Len;
- Herbert, Zachary;
- Köster, Johannes;
- Li, Bo;
- Sun, Hanfei;
- Li, Taiwen;
- Zhang, Jian;
- Qiu, Xintao;
- Pun, Matthew;
- Jeselsohn, Rinath;
- Brown, Myles;
- Liu, X. Shirley;
- Long, Henry W.
Publication type:
Article