Works by Qiu, Xintao

Results: 13

Integrative analyses of single-cell transcriptome and regulome using MAESTRO.

Published in:

Genome Biology, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s13059-020-02116-x

By:

Wang, Chenfei;
Sun, Dongqing;
Huang, Xin;
Wan, Changxin;
Li, Ziyi;
Han, Ya;
Qin, Qian;
Fan, Jingyu;
Qiu, Xintao;
Xie, Yingtian;
Meyer, Clifford A.;
Brown, Myles;
Tang, Ming;
Long, Henry;
Liu, Tao;
Liu, X. Shirley

Publication type:

Article

MYC drives aggressive prostate cancer by disrupting transcriptional pause release at androgen receptor targets.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-30257-z

By:

Qiu, Xintao;
Boufaied, Nadia;
Hallal, Tarek;
Feit, Avery;
de Polo, Anna;
Luoma, Adrienne M.;
Alahmadi, Walaa;
Larocque, Janie;
Zadra, Giorgia;
Xie, Yingtian;
Gu, Shengqing;
Tang, Qin;
Zhang, Yi;
Syamala, Sudeepa;
Seo, Ji-Heui;
Bell, Connor;
O'Connor, Edward;
Liu, Yang;
Schaeffer, Edward M.;
Jeffrey Karnes, R.

Publication type:

Article

Subtype heterogeneity and epigenetic convergence in neuroendocrine prostate cancer.

Published in:

Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-26042-z

By:

Cejas, Paloma;
Xie, Yingtian;
Font-Tello, Alba;
Lim, Klothilda;
Syamala, Sudeepa;
Qiu, Xintao;
Tewari, Alok K.;
Shah, Neel;
Nguyen, Holly M.;
Patel, Radhika A.;
Brown, Lisha;
Coleman, Ilsa;
Hackeng, Wenzel M.;
Brosens, Lodewijk;
Dreijerink, Koen M. A.;
Ellis, Leigh;
Alaiwi, Sarah Abou;
Seo, Ji-Heui;
Baca, Sylvan;
Beltran, Himisha

Publication type:

Article

Gene regulatory network construction identified NFYA as a diffuse subtype-specific prognostic factor in gastric cancer.

Published in:

International Journal of Oncology, 2018, v. 53, n. 5, p. 1857, doi. 10.3892/ijo.2018.4519

By:

Cao, Bin;
Zhao, Yu;
Zhang, Zheng;
Li, Hengcun;
Xing, Jie;
Guo, Shuilong;
Qiu, Xintao;
Zhang, Shutian;
Min, Li;
Zhu, Shengtao

Publication type:

Article

Tutorial: integrative computational analysis of bulk RNA-sequencing data to characterize tumor immunity using RIMA.

Published in:

Nature Protocols, 2023, v. 18, n. 8, p. 2404, doi. 10.1038/s41596-023-00841-8

By:

Yang, Lin;
Wang, Jin;
Altreuter, Jennifer;
Jhaveri, Aashna;
Wong, Cheryl J.;
Song, Li;
Fu, Jingxin;
Taing, Len;
Bodapati, Sudheshna;
Sahu, Avinash;
Tokheim, Collin;
Zhang, Yi;
Zeng, Zexian;
Bai, Gali;
Tang, Ming;
Qiu, Xintao;
Long, Henry W.;
Michor, Franziska;
Liu, Yang;
Liu, X. Shirley

Publication type:

Article

VIPER: Visualization Pipeline for RNA-seq, a Snakemake workflow for efficient and complete RNA-seq analysis.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2139-9

By:

Cornwell, MacIntosh;
Vangala, Mahesh;
Taing, Len;
Herbert, Zachary;
Köster, Johannes;
Li, Bo;
Sun, Hanfei;
Li, Taiwen;
Zhang, Jian;
Qiu, Xintao;
Pun, Matthew;
Jeselsohn, Rinath;
Brown, Myles;
Liu, X. Shirley;
Long, Henry W.

Publication type:

Article

Comprehensive genomic characterization of HER2-low and HER2-0 breast cancer.

Published in:

Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-43324-w

By:

Tarantino, Paolo;
Gupta, Hersh;
Hughes, Melissa E.;
Files, Janet;
Strauss, Sarah;
Kirkner, Gregory;
Feeney, Anne-Marie;
Li, Yvonne;
Garrido-Castro, Ana C.;
Barroso-Sousa, Romualdo;
Bychkovsky, Brittany L.;
DiLascio, Simona;
Sholl, Lynette;
MacConaill, Laura;
Lindeman, Neal;
Johnson, Bruce E.;
Meyerson, Matthew;
Jeselsohn, Rinath;
Qiu, Xintao;
Li, Rong

Publication type:

Article

Author Correction: Comprehensive genomic characterization of HER2-low and HER2-0 breast cancer.

Published in:

2023

By:

Tarantino, Paolo;
Gupta, Hersh;
Hughes, Melissa E.;
Files, Janet;
Strauss, Sarah;
Kirkner, Gregory;
Feeney, Anne-Marie;
Li, Yvonne;
Garrido-Castro, Ana C.;
Barroso-Sousa, Romualdo;
Bychkovsky, Brittany L.;
DiLascio, Simona;
Sholl, Lynette;
MacConaill, Laura;
Lindeman, Neal;
Johnson, Bruce E.;
Meyerson, Matthew;
Jeselsohn, Rinath;
Qiu, Xintao;
Li, Rong

Publication type:

Correction Notice

Comprehensive genomic characterization of HER2-low and HER2-0 breast cancer.

Published in:

Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-43324-w

By:

Tarantino, Paolo;
Gupta, Hersh;
Hughes, Melissa E.;
Files, Janet;
Strauss, Sarah;
Kirkner, Gregory;
Feeney, Anne-Marie;
Li, Yvonne;
Garrido-Castro, Ana C.;
Barroso-Sousa, Romualdo;
Bychkovsky, Brittany L.;
DiLascio, Simona;
Sholl, Lynette;
MacConaill, Laura;
Lindeman, Neal;
Johnson, Bruce E.;
Meyerson, Matthew;
Jeselsohn, Rinath;
Qiu, Xintao;
Li, Rong

Publication type:

Article

Androgen receptor reprogramming demarcates prognostic, context-dependent gene sets in primary and metastatic prostate cancer.

Published in:

Clinical Epigenetics, 2022, v. 14, n. 1, p. 1, doi. 10.1186/s13148-022-01278-8

By:

Severson, Tesa;
Qiu, Xintao;
Alshalalfa, Mohammed;
Sjöström, Martin;
Quigley, David;
Bergman, Andries;
Long, Henry;
Feng, Felix;
Freedman, Matthew L.;
Zwart, Wilbert;
Pomerantz, Mark M.

Publication type:

Article

Reprogramming of the FOXA1 cistrome in treatment-emergent neuroendocrine prostate cancer.

Published in:

Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-22139-7

By:

Baca, Sylvan C.;
Takeda, David Y.;
Seo, Ji-Heui;
Hwang, Justin;
Ku, Sheng Yu;
Arafeh, Rand;
Arnoff, Taylor;
Agarwal, Supreet;
Bell, Connor;
O'Connor, Edward;
Qiu, Xintao;
Alaiwi, Sarah Abou;
Corona, Rosario I.;
Fonseca, Marcos A. S.;
Giambartolomei, Claudia;
Cejas, Paloma;
Lim, Klothilda;
He, Monica;
Sheahan, Anjali;
Nassar, Amin

Publication type:

Article

Perturbed myoepithelial cell differentiation in BRCA mutation carriers and in ductal carcinoma in situ.

Published in:

Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-12125-5

By:

Ding, Lina;
Su, Ying;
Fassl, Anne;
Hinohara, Kunihiko;
Qiu, Xintao;
Harper, Nicholas W.;
Huh, Sung Jin;
Bloushtain-Qimron, Noga;
Jovanović, Bojana;
Ekram, Muhammad;
Zi, Xiaoyuan;
Hines, William C.;
Alečković, Maša;
Gil del Alcazar, Carlos;
Caulfield, Ryan J.;
Bonal, Dennis M.;
Nguyen, Quang-De;
Merino, Vanessa F.;
Choudhury, Sibgat;
Ethington, Gabrielle

Publication type:

Article

Perturbed myoepithelial cell differentiation in BRCA mutation carriers and in ductal carcinoma in situ.

Published in:

Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-12125-5

By:

Ding, Lina;
Su, Ying;
Fassl, Anne;
Hinohara, Kunihiko;
Qiu, Xintao;
Harper, Nicholas W.;
Huh, Sung Jin;
Bloushtain-Qimron, Noga;
Jovanović, Bojana;
Ekram, Muhammad;
Zi, Xiaoyuan;
Hines, William C.;
Alečković, Maša;
Gil del Alcazar, Carlos;
Caulfield, Ryan J.;
Bonal, Dennis M.;
Nguyen, Quang-De;
Merino, Vanessa F.;
Choudhury, Sibgat;
Ethington, Gabrielle

Publication type:

Article