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Combined IL6 and CCR2 blockade potentiates antitumor activity of NK cells in HPV-negative head and neck cancer.
- Published in:
- Journal of Experimental & Clinical Cancer Research (17569966), 2024, v. 43, n. 1, p. 1, doi. 10.1186/s13046-024-03002-1
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- Publication type:
- Article
Integrative Bayesian tensor regression for imaging genetics applications.
- Published in:
- Frontiers in Neuroscience, 2023, p. 1, doi. 10.3389/fnins.2023.1212218
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- Publication type:
- Article
Unsupervised Hierarchical Clustering of Head and Neck Cancer Patients by Pre-Treatment Plasma Metabolomics Creates Prognostic Metabolic Subtypes.
- Published in:
- Cancers, 2023, v. 15, n. 12, p. 3184, doi. 10.3390/cancers15123184
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- Publication type:
- Article
Identification of androgen response‐related lncRNAs in prostate cancer.
- Published in:
- Prostate, 2023, v. 83, n. 6, p. 590, doi. 10.1002/pros.24494
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- Publication type:
- Article
NetAct: a computational platform to construct core transcription factor regulatory networks using gene activity.
- Published in:
- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02835-3
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- Publication type:
- Article
A clade C HIV-1 vaccine protects against heterologous SHIV infection by modulating IgG glycosylation and T helper response in macaques.
- Published in:
- Science Immunology, 2022, v. 7, n. 73, p. 1, doi. 10.1126/sciimmunol.abl4102
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- Publication type:
- Article
LRcell: detecting the source of differential expression at the sub–cell-type level from bulk RNA-seq data.
- Published in:
- Briefings in Bioinformatics, 2022, v. 23, n. 3, p. 1, doi. 10.1093/bib/bbac063
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- Publication type:
- Article
Multiomics Analysis of Structural Magnetic Resonance Imaging of the Brain and Cerebrospinal Fluid Metabolomics in Cognitively Normal and Impaired Adults.
- Published in:
- Frontiers in Aging Neuroscience, 2022, v. 14, p. 1, doi. 10.3389/fnagi.2021.796067
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- Publication type:
- Article
Disease category-specific annotation of variants using an ensemble learning framework.
- Published in:
- Briefings in Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1093/bib/bbab438
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- Publication type:
- Article
A wonderful time - exciting progress made in the past 20 years in genetics powered by the Human Genome Project.
- Published in:
- Quantitative Biology, 2021, v. 9, n. 4, p. 366, doi. 10.15302/J-QB-021-0273
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- Publication type:
- Article
Systematic Evaluation of DNA Sequence Variations on in vivo Transcription Factor Binding Affinity.
- Published in:
- Frontiers in Genetics, 2021, v. 12, p. 1, doi. 10.3389/fgene.2021.667866
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- Publication type:
- Article
A machine learning approach to brain epigenetic analysis reveals kinases associated with Alzheimer's disease.
- Published in:
- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-24710-8
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- Publication type:
- Article
The Genetics of Sudden Infant Death Syndrome—Towards a Gene Reference Resource.
- Published in:
- Genes, 2021, v. 12, n. 2, p. 216, doi. 10.3390/genes12020216
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- Publication type:
- Article
Author Correction: Truncation of mutant huntingtin in knock-in mice demonstrates exon1 huntingtin is a key pathogenic form.
- Published in:
- 2020
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- Publication type:
- Correction Notice
Signatures of somatic mutations and gene expression from p16<sup>INK4A</sup> positive head and neck squamous cell carcinomas (HNSCC).
- Published in:
- PLoS ONE, 2020, v. 15, n. 9, p. 1, doi. 10.1371/journal.pone.0238497
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- Publication type:
- Article
Proceedings of the 2019 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference.
- Published in:
- BMC Bioinformatics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12859-020-03580-9
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- Publication type:
- Article
Truncation of mutant huntingtin in knock-in mice demonstrates exon1 huntingtin is a key pathogenic form.
- Published in:
- Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-16318-1
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- Publication type:
- Article
DeconPeaker, a Deconvolution Model to Identify Cell Types Based on Chromatin Accessibility in ATAC-Seq Data of Mixture Samples.
- Published in:
- Frontiers in Genetics, 2020, v. 11, p. 1, doi. 10.3389/fgene.2020.00392
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- Publication type:
- Article
Application of topic models to a compendium of ChIP-Seq datasets uncovers recurrent transcriptional regulatory modules.
- Published in:
- Bioinformatics, 2020, v. 36, n. 8, p. 2352, doi. 10.1093/bioinformatics/btz975
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- Publication type:
- Article
Regulatory annotation of genomic intervals based on tissue-specific expression QTLs.
- Published in:
- Bioinformatics, 2020, v. 36, n. 3, p. 690, doi. 10.1093/bioinformatics/btz669
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- Publication type:
- Article
An Integrated System Biology Approach Yields Drug Repositioning Candidates for the Treatment of Heart Failure.
- Published in:
- Frontiers in Genetics, 2019, p. 1, doi. 10.3389/fgene.2019.00916
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- Publication type:
- Article
RT States: systematic annotation of the human genome using cell type-specific replication timing programs.
- Published in:
- Bioinformatics, 2019, v. 35, n. 13, p. 2167, doi. 10.1093/bioinformatics/bty957
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- Publication type:
- Article
Probabilistic and machine learning-based retrieval approaches for biomedical dataset retrieval.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bax104
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- Publication type:
- Article
Using DIVAN to assess disease/ trait-associated single nucleotide variants in genome-wide scale.
- Published in:
- BMC Research Notes, 2017, v. 10, p. 1, doi. 10.1186/s13104-017-2851-y
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- Publication type:
- Article
Omicseq: a web-based search engine for exploring omics datasets.
- Published in:
- Nucleic Acids Research, 2017, v. 45, n. W1, p. W445, doi. 10.1093/nar/gkx258
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- Publication type:
- Article
Identifying tagging SNPs for African specific genetic variation from the African Diaspora Genome.
- Published in:
- Scientific Reports, 2017, p. 46398, doi. 10.1038/srep46398
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- Publication type:
- Article
Genome-Wide STAT3 Binding Analysis after Histone Deacetylase Inhibition Reveals Novel Target Genes in Dendritic Cells.
- Published in:
- Journal of Innate Immunity, 2017, v. 9, n. 2, p. 126, doi. 10.1159/000450681
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- Publication type:
- Article
DIVAN: accurate identification of noncoding disease-specific risk variants using multi-omics profiles.
- Published in:
- Genome Biology, 2016, v. 17, p. 1, doi. 10.1186/s13059-016-1112-z
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- Publication type:
- Article
Heat Shock Protein Beta-1 Modifies Anterior to Posterior Purkinje Cell Vulnerability in a Mouse Model of Niemann-Pick Type C Disease.
- Published in:
- PLoS Genetics, 2016, v. 12, n. 5, p. 1, doi. 10.1371/journal.pgen.1006042
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- Publication type:
- Article
traseR: an R package for performing trait-associated SNP enrichment analysis in genomic intervals.
- Published in:
- Bioinformatics, 2016, v. 32, n. 8, p. 1214, doi. 10.1093/bioinformatics/btv741
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- Publication type:
- Article
Bayesian inference with historical data-based informative priors improves detection of differentially expressed genes.
- Published in:
- Bioinformatics, 2016, v. 32, n. 5, p. 682, doi. 10.1093/bioinformatics/btv631
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- Publication type:
- Article
One Size Doesn't Fit All - RefEditor: Building Personalized Diploid Reference Genome to Improve Read Mapping and Genotype Calling in Next Generation Sequencing Studies.
- Published in:
- 2015
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- Publication type:
- Product Review
A novel statistical method for quantitative comparison of multiple ChIP-seq datasets.
- Published in:
- Bioinformatics, 2015, v. 31, n. 12, p. 1889, doi. 10.1093/bioinformatics/btv094
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- Publication type:
- Article
Base-resolution methylation patterns accurately predict transcription factor bindings in vivo.
- Published in:
- Nucleic Acids Research, 2015, v. 43, n. 5, p. 2757, doi. 10.1093/nar/gkv151
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- Publication type:
- Article
Insulator function and topological domain border strength scale with architectural protein occupancy.
- Published in:
- Genome Biology, 2014, v. 15, n. 5, p. 2, doi. 10.1186/gb-2014-15-5-r82
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- Publication type:
- Article
Therapeutic targeting of BET bromodomain proteins in castration-resistant prostate cancer.
- Published in:
- Nature, 2014, v. 510, n. 7504, p. 278, doi. 10.1038/nature13229
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- Publication type:
- Article
Direct Amplification, Sequencing and Profiling of <i>Chlamydia trachomatis</i> Strains in Single and Mixed Infection Clinical Samples.
- Published in:
- PLoS ONE, 2014, v. 9, n. 6, p. 1, doi. 10.1371/journal.pone.0099290
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- Publication type:
- Article
The central role of EED in the orchestration of polycomb group complexes.
- Published in:
- Nature Communications, 2014, v. 5, n. 1, p. 3127, doi. 10.1038/ncomms4127
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- Publication type:
- Article
A genome-wide MeSH-based literature mining system predicts implicit gene-to-gene relationships and networks.
- Published in:
- BMC Systems Biology, 2013, v. 7, p. 1, doi. 10.1186/1752-0509-7-S3-S9
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- Publication type:
- Article
Allogeneic T cell responses are regulated by a specific miRNA-mRNA network.
- Published in:
- 2013
- By:
- Publication type:
- journal article
Allogeneic T cell responses are regulated by a specific miRNA-mRNA network.
- Published in:
- Journal of Clinical Investigation, 2013, v. 123, n. 11, p. 4739, doi. 10.1172/JCI70013
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- Publication type:
- Article
Sparsely correlated hidden Markov models with application to genome-wide location studies.
- Published in:
- Bioinformatics, 2013, v. 29, n. 5, p. 533, doi. 10.1093/bioinformatics/btt012
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- Publication type:
- Article
Exploring the Cooccurrence Patterns of Multiple Sets of Genomic Intervals.
- Published in:
- BioMed Research International, 2013, v. 2013, p. 1, doi. 10.1155/2013/617545
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- Publication type:
- Article
Exploring the cooccurrence patterns of multiple sets of genomic intervals.
- Published in:
- 2013
- By:
- Publication type:
- Journal Article
Using Poisson mixed-effects model to quantify transcript-level gene expression in RNA-Seq.
- Published in:
- Bioinformatics, 2012, v. 28, n. 1, p. 63, doi. 10.1093/bioinformatics/btr616
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- Publication type:
- Article
SAINT: probabilistic scoring of affinity purification-mass spectrometry data.
- Published in:
- Nature Methods, 2011, v. 8, n. 1, p. 70, doi. 10.1038/nmeth.1541
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- Publication type:
- Article
On the detection and refinement of transcription factor binding sites using ChIP-Seq data.
- Published in:
- Nucleic Acids Research, 2010, v. 38, n. 7, p. 2154, doi. 10.1093/nar/gkp1180
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- Publication type:
- Article
HPeak: an HMM-based algorithm for definingread-enriched regions in ChIP-Seq data.
- Published in:
- BMC Bioinformatics, 2010, v. 11, p. 369, doi. 10.1186/1471-2105-11-369
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- Publication type:
- Article
Global Gene Expression Analysis Reveals Evidence for Decreased Lipid Biosynthesis and Increased Innate Immunity in Uninvolved Psoriatic Skin.
- Published in:
- Journal of Investigative Dermatology, 2009, v. 129, n. 12, p. 2795, doi. 10.1038/jid.2009.173
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- Publication type:
- Article
Hierarchical hidden Markov model with application to joint analysis of ChIP-chip and ChIP-seq data.
- Published in:
- Bioinformatics, 2009, v. 25, n. 14, p. 1715, doi. 10.1093/bioinformatics/btp312
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- Publication type:
- Article