Works by Qihui Zhu

Results: 38

Author Correction: Lactobacillus plantarum L168 improves hyperoxia-induced pulmonary inflammation and hypoalveolarization in a rat model of bronchopulmonary dysplasia.

Published in:

2024

By:

Shen, Xian;
Yang, Zhaocong;
Wang, Qiang;
Chen, Xu;
Zhu, Qihui;
Liu, Zhi;
Patel, Nishant;
Liu, Xingyin;
Mo, Xuming

Publication type:

Correction Notice

Lactobacillus plantarum L168 improves hyperoxia-induced pulmonary inflammation and hypoalveolarization in a rat model of bronchopulmonary dysplasia.

Published in:

NPJ Biofilms & Microbiomes, 2024, v. 10, n. 1, p. 1, doi. 10.1038/s41522-024-00504-w

By:

Shen, Xian;
Yang, Zhaocong;
Wang, Qiang;
Chen, Xu;
Zhu, Qihui;
Liu, Zhi;
Patel, Nishant;
Liu, Xingyin;
Mo, Xuming

Publication type:

Article

Lactobacillus plantarum L168 improves hyperoxia-induced pulmonary inflammation and hypoalveolarization in a rat model of bronchopulmonary dysplasia.

Published in:

NPJ Biofilms & Microbiomes, 2024, v. 10, n. 1, p. 1, doi. 10.1038/s41522-024-00504-w

By:

Shen, Xian;
Yang, Zhaocong;
Wang, Qiang;
Chen, Xu;
Zhu, Qihui;
Liu, Zhi;
Patel, Nishant;
Liu, Xingyin;
Mo, Xuming

Publication type:

Article

Refinement of primate copy number variation hotspots identifies candidate genomic regions evolving under positive selection.

Published in:

Genome Biology, 2011, v. 12, n. 5, p. 1, doi. 10.1186/gb-2011-12-5-r52

By:

Gokcumen, Omer;
Babb, Paul L.;
Iskow, Rebecca C.;
Qihui Zhu;
Xinghua Shi;
Mills, Ryan E.;
Ionita-Laza, Iuliana;
Vallender, Eric J.;
Clark, Andrew G.;
Johnson, Welkin E.;
Lee, Charles

Publication type:

Article

The involvement of transient receptor potential channels in mast cell activation by microbubbles.

Published in:

Journal of Cellular & Molecular Medicine, 2023, v. 27, n. 22, p. 3628, doi. 10.1111/jcmm.17947

By:

Liu, Jia;
Qing, Long;
He, Yufei;
Zhu, Qihui;
Xu, Weigang;
Wu, Jianhua

Publication type:

Article

A novel treatment strategy for lapatinib resistance in a subset of HER2-amplified gastric cancer.

Published in:

2021

By:

Ning, Gang;
Zhu, Qihui;
Kang, Wonyoung;
Lee, Hamin;
Maher, Leigh;
Suh, Yun-Suhk;
Michaud, Michael;
Silva, Mayerlin;
Kwon, Jee Young;
Zhang, Chengsheng;
Lee, Charles

Publication type:

journal article

Phylogenetic relationships among A-genome species of the genus Oryzarevealed by intron sequences of four nuclear genes.

Published in:

New Phytologist, 2005, v. 167, n. 1, p. 249, doi. 10.1111/j.1469-8137.2005.01406.x

By:

Song Ge;
Qihui Zhu

Publication type:

Article

SvAnna: efficient and accurate pathogenicity prediction of coding and regulatory structural variants in long-read genome sequencing.

Published in:

Genome Medicine, 2022, v. 14, n. 1, p. 1, doi. 10.1186/s13073-022-01046-6

By:

Danis, Daniel;
Jacobsen, Julius O. B.;
Balachandran, Parithi;
Zhu, Qihui;
Yilmaz, Feyza;
Reese, Justin;
Haimel, Matthias;
Lyon, Gholson J.;
Helbig, Ingo;
Mungall, Christopher J.;
Beck, Christine R.;
Lee, Charles;
Smedley, Damian;
Robinson, Peter N.

Publication type:

Article

High-Throughput Discovery of Mutations in Tef Semi-Dwarfing Genes by Next-Generation Sequencing Analysis.

Published in:

Genetics, 2012, v. 192, n. 3, p. 819, doi. 10.1534/genetics.112.144436

By:

Qihui Zhu;
Smith, Shavannor M.;
Ayele, Mulu;
Lixing Yang;
Jogi, Ansuya;
Chaluvadi, Srinivasa R.;
Bennetzen, Jeffrey L.

Publication type:

Article

Evolution and functional analysis of the Pif97 gene of the Pacific oyster Crassostrea gigas.

Published in:

Current Zoology, 2013, v. 59, n. 1, p. 109, doi. 10.1093/czoolo/59.1.109

By:

Xiaotong WANG;
Xiaorui SONG;
Tong WANG;
Qihui ZHU;
Guoying MIAO;
Yuanxin CHEN;
Xiaodong FANG;
Huayong QUE;
Li LI;
Guofan ZHANG

Publication type:

Article

Comparison of Genetic Diversity between Hatchery‐Reared and Wild Rock Bream (Oplegnathus fasciatus) Based on Microsatellite Markers and Mitochondrial COI Sequences.

Published in:

Aquaculture Research, 2024, v. 2024, p. 1, doi. 10.1155/2024/5570764

By:

Liu, Simiao;
Yu, Qin;
Chen, Ruiyi;
Hu, Weihua;
Yan, Xiaojun;
Han, Qingxi;
Xu, Dongdong;
Zhu, Qihui;
Das, Sofia Priyadarsani

Publication type:

Article

The Detection of a Functional 168 bp Deletion of the HOXB13 Gene Determining Short Tail and Its Association with Senior Growth Traits in Sheep Breeds Worldwide.

Published in:

Animals (2076-2615), 2024, v. 14, n. 11, p. 1617, doi. 10.3390/ani14111617

By:

Zhu, Qihui;
Liu, Peiyao;
Zhang, Mingshi;
Kang, Yuxin;
Lv, Linmi;
Xu, Hongwei;
Zhang, Qingfeng;
Li, Ran;
Pan, Chuanying;
Lan, Xianyong

Publication type:

Article

Efficacy of fecal microbiota transplantation in patients with Parkinson's disease: clinical trial results from a randomized, placebo-controlled design.

Published in:

Gut Microbes, 2023, v. 15, n. 2, p. 1, doi. 10.1080/19490976.2023.2284247

By:

Cheng, Yi;
Tan, Guohua;
Zhu, Qihui;
Wang, Chun;
Ruan, Guangcong;
Ying, Senhong;
Qie, Jinlong;
Hu, Xiaofei;
Xiao, Zhifeng;
Xu, Fenghua;
Chen, Lu;
Chen, Minjia;
Pei, Yang;
Zhang, Hao;
Tian, Yuting;
Chen, Dongfeng;
Liu, Xingyin;
Huang, Heqing;
Wei, Yanling

Publication type:

Article

TeXP: Deconvolving the effects of pervasive and autonomous transcription of transposable elements.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 8, p. 1, doi. 10.1371/journal.pcbi.1007293

By:

Navarro, Fabio CP;
Hoops, Jacob;
Bellfy, Lauren;
Cerveira, Eliza;
Zhu, Qihui;
Zhang, Chengsheng;
Lee, Charles;
Gerstein, Mark B.

Publication type:

Article

DRTF: a database of rice transcription factors.

Published in:

Bioinformatics, 2006, v. 22, n. 10, p. 1286, doi. 10.1093/bioinformatics/btl107

By:

Ge Gao;
Yingfu Zhong;
Anyuan Guo;
Qihui Zhu;
Wen Tang;
Weimou Zheng;
Xiaocheng Gu;
Liping Wei;
Jingchu Luo

Publication type:

Article

Genetic Variability of Mass-Selected and Wild Populations of Yellow Drum (Nibea albiflora) Revealed Using Microsatellites.

Published in:

Fishes (MDPI AG), 2024, v. 9, n. 1, p. 25, doi. 10.3390/fishes9010025

By:

Yu, Qin;
Liu, Simiao;
Zhu, Qihui;
Chen, Ruiyi;
Hu, Weihua;
Xu, Dongdong

Publication type:

Article

Lead exposure results in defective behavior as well as alteration of gut microbiota composition in flies and their offsprings.

Published in:

International Journal of Developmental Neuroscience, 2020, v. 80, n. 8, p. 699, doi. 10.1002/jdn.10067

By:

Sun, Yu;
Tang, Yi;
Xu, Xinwen;
Hu, Kehan;
Zhang, Zixiao;
Zhang, Yue;
Yi, Zhongyuan;
Zhu, Qihui;
Xu, Rui;
Zhang, Yumin;
Liu, Zhi;
Liu, Xingyin

Publication type:

Article

Deciphering the Origin and Evolution of the X1X2Y System in Two Closely-Related Oplegnathus Species (Oplegnathidae and Centrarchiformes).

Published in:

International Journal of Molecular Sciences, 2019, v. 20, n. 14, p. 3571, doi. 10.3390/ijms20143571

By:

Xu, Dongdong;
Sember, Alexandr;
Zhu, Qihui;
Oliveira, Ezequiel Aguiar de;
Liehr, Thomas;
Al-Rikabi, Ahmed B. H.;
Xiao, Zhizhong;
Song, Hongbin;
Cioffi, Marcelo de Bello

Publication type:

Article

Evidence that Natural Selection is the Primary Cause of the Guanine-cytosine Content Variation in Rice Genes.

Published in:

Journal of Integrative Plant Biology, 2007, v. 49, n. 9, p. 1393, doi. 10.1111/j.1744-7909.2007.00532.x

By:

Shi, Xiaoli;
Wang, Xiyin;
Li, Zhe;
Zhu, Qihui;
Yang, Ji;
Ge, Song;
Luo, Jingchu

Publication type:

Article

Multilocus Analysis of Nucleotide Variation of Oryza sativa and Its Wild Relatives: Severe Bottleneck during Domestication of Rice.

Published in:

Molecular Biology & Evolution, 2007, v. 24, n. 3, p. 875, doi. 10.1093/molbev/msm005

By:

Qihui Zhu;
Xiaoming Zheng;
Jingchu Luo;
Gaut, Brandon S.;
Ge, Song

Publication type:

Article

muCNV: genotyping structural variants for population-level sequencing.

Published in:

Bioinformatics, 2021, v. 37, n. 14/15, p. 2055, doi. 10.1093/bioinformatics/btab199

By:

Jun, Goo;
Sedlazeck, Fritz;
Zhu, Qihui;
English, Adam;
Metcalf, Ginger;
Kang, Hyun Min;
(HGSVC), Human Genome Structural Variation Consortium;
Lee, Charles;
Gibbs, Richard;
Boerwinkle, Eric

Publication type:

Article

Expression Characterization of Stress Genes Under High and Low Temperature Stresses in the Pacific Oyster, Crassostrea gigas.

Published in:

Marine Biotechnology, 2016, v. 18, n. 2, p. 176, doi. 10.1007/s10126-015-9678-0

By:

Zhu, Qihui;
Zhang, Linlin;
Li, Li;
Que, Huayong;
Zhang, Guofan

Publication type:

Article

Association Between InDel and CNV Variation in the FBLN1 Gene and Slaughter Traits in Cattle.

Published in:

Agriculture; Basel, 2025, v. 15, n. 5, p. 518, doi. 10.3390/agriculture15050518

By:

Gu, Hongye;
Zhu, Qihui;
Li, Yafang;
Zhang, Yuli;
Zhang, Chiyuan;
Mao, Cui;
Jiang, Fugui;
Pan, Chuanying;
Lan, Xianyong;
Deng, Tianyu

Publication type:

Article

High-resolution deconstruction of evolution induced by chemotherapy treatments in breast cancer xenografts.

Published in:

Scientific Reports, 2018, v. 8, n. 1, p. 1, doi. 10.1038/s41598-018-36184-8

By:

Kim, Hyunsoo;
Kumar, Pooja;
Menghi, Francesca;
Noorbakhsh, Javad;
Cerveira, Eliza;
Ryan, Mallory;
Zhu, Qihui;
Ananda, Guruprasad;
George, Joshy;
Chen, Henry C.;
Mockus, Susan;
Zhang, Chengsheng;
Yang, Yan;
Keck, James;
Karuturi, R. Krishna Murthy;
Bult, Carol J.;
Lee, Charles;
Liu, Edison T.;
Chuang, Jeffrey H.

Publication type:

Article

Genome and Transcriptome Analyses Provide Insight into the Euryhaline Adaptation Mechanism of <i>Crassostrea gigas</i>.

Published in:

PLoS ONE, 2013, v. 8, n. 3, p. 1, doi. 10.1371/journal.pone.0058563

By:

Meng, Jie;
Zhu, Qihui;
Zhang, Linlin;
Li, Chunyan;
Li, Li;
She, Zhicai;
Huang, Baoyu;
Zhang, Guofan

Publication type:

Article

Balancing Selection on a Regulatory Region Exhibiting Ancient Variation That Predates Human--Neandertal Divergence.

Published in:

PLoS Genetics, 2013, v. 9, n. 4, p. 1, doi. 10.1371/journal.pgen.1003404

By:

Gokcumen, Omer;
Zhu, Qihui;
Mulder, Lubbertus C. F.;
Iskow, Rebecca C.;
Austermann, Christian;
Scharer, Christopher D.;
Raj, Towfique;
Boss, Jeremy M.;
Sunyaev, Shamil;
Price, Alkes;
Stranger, Barbara;
Simon, Viviana;
Lee, Charles

Publication type:

Article

Biological explanations for discordant noninvasive prenatal test results: Preliminary data and lessons learned.

Published in:

2018

By:

Wilkins‐Haug, Louise;
Zhang, Chengsheng;
Cerveira, Eliza;
Ryan, Mallory;
Mil‐homens, Adam;
Zhu, Qihui;
Reddi, Honey;
Lee, Charles;
Bianchi, Diana W.;
Wilkins-Haug, Louise;
Mil-Homens, Adam

Publication type:

journal article

Characterization of Early Gonadal Differentiation and Induction of Sex Reversal in the Rock Bream Oplegnathus fasciatus.

Published in:

Marine Biotechnology, 2023, v. 25, n. 3, p. 403, doi. 10.1007/s10126-023-10213-8

By:

Liu, Mingtao;
Zhu, Qihui;
Li, Huan;
Chen, Ruiyi;
Hu, Weihua;
Liu, Simiao;
Xu, Dongdong

Publication type:

Article

Sex-Specific Genomic Region Identification and Molecular Sex Marker Development of Rock Bream (Oplegnathus fasciatus).

Published in:

Marine Biotechnology, 2022, v. 24, n. 1, p. 163, doi. 10.1007/s10126-022-10095-2

By:

Gong, Jie;
Li, Bijun;
Zhao, Ji;
Zhou, Zhixiong;
Ke, Qiaozhen;
Zhu, Qihui;
Xu, Dongdong;
Zhou, Tao;
Xu, Peng

Publication type:

Article

Identification of HSF1 Target Genes Involved in Thermal Stress in the Pacific Oyster Crassostrea gigas by ChIP-seq.

Published in:

Marine Biotechnology, 2020, v. 22, n. 2, p. 167, doi. 10.1007/s10126-019-09942-6

By:

Liu, Youli;
Zhu, Qihui;
Li, Li;
Wang, Wei;
Zhang, Guofan

Publication type:

Article

Selection on grain shattering genes and rates of rice domestication.

Published in:

New Phytologist, 2009, v. 184, n. 3, p. 708, doi. 10.1111/j.1469-8137.2009.02984.x

By:

Lin-Bin Zhang;
Qihui Zhu;
Zhi-Qiang Wu;
Ross-Ibarra, Jeffrey;
Gaut, Brandon S.;
Song Ge;
Tao Sang

Publication type:

Article

Comparative Transcriptome Analyses Characterize Expression Signatures Among Males, Females, Neo-Males, and Gynogenetic Females in the Yellow Drum (Nibea albiflora).

Published in:

Frontiers in Genetics, 2022, v. 13, p. 1, doi. 10.3389/fgene.2022.872815

By:

Zhu, Qihui;
Qin, Zeqian;
Chen, Ruiyi;
Wang, Ligai;
Tan, Peng;
Xu, Dongdong

Publication type:

Article

Identification and Characterization of Dimorphic Expression of Sex-Related Genes in Rock Bream, a Fish With Multiple Sex Chromosomes.

Published in:

Frontiers in Genetics, 2021, v. 12, p. 1, doi. 10.3389/fgene.2021.791179

By:

Li, Huan;
Zhu, Qihui;
Chen, Ruiyi;
Liu, Mingtao;
Xu, Dongdong

Publication type:

Article

Publisher Correction: Chromosome-scale assembly and high-density genetic map of the yellow drum, Nibea albiflora.

Published in:

2021

By:

Xu, Dongdong;
Zhang, Wanchang;
Chen, Ruiyi;
Song, Hongbin;
Tian, Lu;
Tan, Peng;
Wang, Ligai;
Zhu, Qihui;
Wu, Bin;
Lou, Bao;
Min, Jiumeng;
Zhou, Juhong

Publication type:

Correction Notice

Chromosome-scale assembly and high-density genetic map of the yellow drum, Nibea albiflora.

Published in:

Scientific Data, 2021, v. 8, n. 1, p. 1, doi. 10.1038/s41597-021-01045-z

By:

Xu, Dongdong;
Zhang, Wanchang;
Chen, Ruiyi;
Song, Hongbin;
Tian, Lu;
Tan, Peng;
Wang, Ligai;
Zhu, Qihui;
Wu, Bin;
Lou, Bao;
Min, Jiumeng;
Zhou, Juhong

Publication type:

Article

Genome Insights and Identification of Sex Determination Region and Sex Markers in Argyrosomus japonicus.

Published in:

Genes, 2024, v. 15, n. 12, p. 1493, doi. 10.3390/genes15121493

By:

Liu, Yike;
Li, Wanbo;
Yekefenhazi, Dinaer;
Yang, Xianfeng;
Zhu, Qihui;
Ye, Kun;
Han, Fang;
Xu, Dongdong

Publication type:

Article

FusorSV: an algorithm for optimally combining data from multiple structural variation detection methods.

Published in:

Genome Biology, 2018, v. 19, p. 1, doi. 10.1186/s13059-018-1404-6

By:

Becker, Timothy;
Lee, Wan-Ping;
Leone, Joseph;
Zhu, Qihui;
Zhang, Chengsheng;
Liu, Silvia;
Sargent, Jack;
Shanker, Kritika;
Mil-homens, Adam;
Cerveira, Eliza;
Ryan, Mallory;
Cha, Jane;
Navarro, Fabio C. P.;
Galeev, Timur;
Gerstein, Mark;
Mills, Ryan E.;
Shin, Dong-Guk;
Lee, Charles;
Malhotra, Ankit

Publication type:

Article

Reversible rearrangement of magnetic nanoparticles in solution studied using time‐resolved SAXS method.

Published in:

Journal of Synchrotron Radiation, 2019, v. 26, n. 4, p. 1294, doi. 10.1107/S1600577519004909

By:

Huang, Lanqing;
Mai, Jingeng;
Zhu, Qihui;
Guo, Zhen;
Qin, Siying;
Yang, Peilin;
Li, Xuanxuan;
Shi, Yingchen;
Wang, Xiaotian;
Wang, Qining;
Li, Na;
Xie, Can;
Liu, Haiguang

Publication type:

Article