Crystal structure of a group II intron in the pre-catalytic state.
- Published in:
- Nature Structural & Molecular Biology, 2012, v. 19, n. 5, p. 555, doi. 10.1038/nsmb.2270
- By:
- Publication type:
- Article
Works by Pyle, Anna Marie
Results: 54
1
2
Structural basis for exon recognition by a group II intron.
- Published in:
- Nature Structural & Molecular Biology, 2008, v. 15, n. 11, p. 1221, doi. 10.1038/nsmb.1509
- By:
- Publication type:
- Article
3
A folding control element for tertiary collapse of a group II intron ribozyme.
- Published in:
- Nature Structural & Molecular Biology, 2007, v. 14, n. 1, p. 37, doi. 10.1038/nsmb1181
- By:
- Publication type:
- Article
4
Now on display: a gallery of group II intron structures at different stages of catalysis.
- Published in:
- Mobile DNA, 2013, v. 4, n. 1, p. 1, doi. 10.1186/1759-8753-4-14
- By:
- Publication type:
- Article
5
CSSR: assignment of secondary structure to coarse‐grained RNA tertiary structures.
- Published in:
- Acta Crystallographica: Section D, Structural Biology, 2022, v. 78, n. 4, p. 466, doi. 10.1107/S2059798322001292
- By:
- Publication type:
- Article
6
Author Correction: Visualizing group II intron dynamics between the first and second steps of splicing.
- Published in:
- 2022
- By:
- Publication type:
- Correction Notice
7
Group II intron ribozymes: RNA machines that shape eukaryotic evolution.
- Published in:
- FASEB Journal, 2007, v. 21, n. 5, p. A41
- By:
- Publication type:
- Article
8
A single active-site region for a group II intron.
- Published in:
- Nature Structural & Molecular Biology, 2005, v. 12, n. 7, p. 626, doi. 10.1038/nsmb957
- By:
- Publication type:
- Article
9
Backbone tracking by the SF2 helicase NPH-II.
- Published in:
- Nature Structural & Molecular Biology, 2004, v. 11, n. 6, p. 526, doi. 10.1038/nsmb771
- By:
- Publication type:
- Article
10
Solution structure of domain 5 of a group II intron ribozyme reveals a new RNA motif.
- Published in:
- Nature Structural & Molecular Biology, 2004, v. 11, n. 2, p. 187, doi. 10.1038/nsmb717
- By:
- Publication type:
- Article
11
Systematic detection of tertiary structural modules in large RNAs and RNP interfaces by Tb-seq.
- Published in:
- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-38623-1
- By:
- Publication type:
- Article
12
RNA substrate binding site in the catalytic core of the Tetrahymena ribozyme.
- Published in:
- Nature, 1992, v. 358, n. 6382, p. 123, doi. 10.1038/358123a0
- By:
- Publication type:
- Article
13
Group II intron splicing in vivo by first-step hydrolysis.
- Published in:
- Nature, 1998, v. 391, n. 6670, p. 915, doi. 10.1038/36142
- By:
- Publication type:
- Article
14
Inside an intron invasion.
- Published in:
- Nature, 1996, v. 381, n. 6580, p. 280, doi. 10.1038/381280a0
- By:
- Publication type:
- Article
15
Defining the functional determinants for RNA surveillance by RIG-I.
- Published in:
- EMBO Reports, 2013, v. 14, n. 9, p. 772, doi. 10.1038/embor.2013.108
- By:
- Publication type:
- Article
16
Visualizing group II intron dynamics between the first and second steps of splicing.
- Published in:
- Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-16741-4
- By:
- Publication type:
- Article
17
PDC: a highly compact file format to store protein 3D coordinates.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2023, v. 2023, p. 1, doi. 10.1093/database/baad018
- By:
- Publication type:
- Article
18
A new way to see RNA.
- Published in:
- Quarterly Reviews of Biophysics, 2011, v. 44, n. 4, p. 433, doi. 10.1017/S0033583511000059
- By:
- Publication type:
- Article
19
The hepatitis C viral NS3 protein is a processive DNA helicase with cofactor enhanced RNA unwinding.
- Published in:
- EMBO Journal, 2002, v. 21, n. 5, p. 1168, doi. 10.1093/emboj/21.5.1168
- By:
- Publication type:
- Article
20
Control of branch-site choice by a group II intron.
- Published in:
- EMBO Journal, 2001, v. 20, n. 23, p. 6866, doi. 10.1093/emboj/20.23.6866
- By:
- Publication type:
- Article
21
Visualizing the solvent-inaccessible core of a group II intron ribozyme.
- Published in:
- EMBO Journal, 2001, v. 20, n. 8, p. 2051, doi. 10.1093/emboj/20.8.2051
- By:
- Publication type:
- Article
22
Defining functional groups, core structural features and inter-domain tertiary contacts essential for group II intron self-splicing: a NAIM analysis.
- Published in:
- EMBO Journal, 1998, v. 17, n. 23, p. 7091, doi. 10.1093/emboj/17.23.7091
- By:
- Publication type:
- Article
23
A map of the binding site for catalytic domain 5 in the core of a group II intron ribozyme.
- Published in:
- EMBO Journal, 1998, v. 17, n. 23, p. 7105, doi. 10.1093/emboj/17.23.7105
- By:
- Publication type:
- Article
24
The DEAH-box protein PRP22 is an ATPase that mediates ATP-dependent mRNA release from the spliceosome and unwinds RNA duplexes.
- Published in:
- EMBO Journal, 1998, v. 17, n. 10, p. 2926, doi. 10.1093/emboj/17.10.2926
- By:
- Publication type:
- Article
25
Metal ion binding sites in a group II intron core.
- Published in:
- Nature Structural Biology, 2000, v. 7, n. 12, p. 1111
- By:
- Publication type:
- Article
26
New tricks from an itinerant intron.
- Published in:
- Nature Structural Biology, 2000, v. 7, n. 5, p. 352, doi. 10.1038/75111
- By:
- Publication type:
- Article
27
Calculating the electrostatic properties of RNA provides new insights into molecular interactions and function.
- Published in:
- Nature Structural Biology, 1999, v. 6, n. 11, p. 1055
- By:
- Publication type:
- Article
28
The tertiary structure of group II introns: implications for biological function and evolution.
- Published in:
- Critical Reviews in Biochemistry & Molecular Biology, 2010, v. 45, n. 3, p. 215, doi. 10.3109/10409231003796523
- By:
- Publication type:
- Article
29
The molecular mechanism of RIG‐I activation and signaling.
- Published in:
- Immunological Reviews, 2021, v. 304, n. 1, p. 154, doi. 10.1111/imr.13022
- By:
- Publication type:
- Article
30
Periodic cycles of RNA unwinding and pausing by hepatitis C virus NS3 helicase.
- Published in:
- Nature, 2004, v. 430, n. 6998, p. 476, doi. 10.1038/nature02704
- By:
- Publication type:
- Article
31
A tertiary interaction that links active-site domains to the 5' splice site of a group II intron.
- Published in:
- Nature, 2000, v. 406, n. 6793, p. 315, doi. 10.1038/35018589
- By:
- Publication type:
- Article
32
Direct tracking of reverse-transcriptase speed and template sensitivity: implications for sequencing and analysis of long RNA molecules.
- Published in:
- Nucleic Acids Research, 2022, v. 50, n. 12, p. 6980, doi. 10.1093/nar/gkac518
- By:
- Publication type:
- Article
33
Structural basis for IL-1α recognition by a modified DNA aptamer that specifically inhibits IL-1α signaling.
- Published in:
- Nature Communications, 2017, v. 8, n. 1, p. 1, doi. 10.1038/s41467-017-00864-2
- By:
- Publication type:
- Article
34
Duplex RNA Activated ATPases (DRAs).
- Published in:
- RNA Biology, 2013, v. 10, n. 1, p. 1, doi. 10.4161/rna.22706
- By:
- Publication type:
- Article
35
Crystal structure of group II intron domain 1 reveals a template for RNA assembly.
- Published in:
- Nature Chemical Biology, 2015, v. 11, n. 12, p. 967, doi. 10.1038/nchembio.1949
- By:
- Publication type:
- Article
36
The 2′-OH group at the group II intron terminus acts as a proton shuttle.
- Published in:
- Nature Chemical Biology, 2010, v. 6, n. 3, p. 218, doi. 10.1038/nchembio.312
- By:
- Publication type:
- Article
37
RNA translocation and unwinding mechanism of HCV NS3 helicase and its coordination by ATP.
- Published in:
- 2006
- By:
- Publication type:
- Letter
38
DNA repair: Big engine finds small breaks.
- Published in:
- Nature, 2004, v. 432, n. 7014, p. 157, doi. 10.1038/432157a
- By:
- Publication type:
- Article
39
Choosing between DNA and RNA: the polymer specificity of RNA helicase NPH-II.
- Published in:
- Nucleic Acids Research, 2005, v. 33, n. 2, p. 644, doi. 10.1093/nar/gki208
- By:
- Publication type:
- Article
40
The identification of novel RNA structural motifs using COMPADRES: an automated approach to structural discovery.
- Published in:
- Nucleic Acids Research, 2004, v. 32, n. 22, p. 6650, doi. 10.1093/nar/gkh1002
- By:
- Publication type:
- Article
41
RNA structure comparison, motif search and discovery using a reduced representation of RNA conformational space.
- Published in:
- Nucleic Acids Research, 2003, v. 31, n. 16, p. 4755, doi. 10.1093/nar/gkg682
- By:
- Publication type:
- Article
42
Analysis of putative RNase sensitivity and protease insensitivity of demethylation activity in extractsfrom rat myoblasts.
- Published in:
- Nucleic Acids Research, 1998, v. 26, n. 24, p. 5573, doi. 10.1093/nar/26.24.5573
- By:
- Publication type:
- Article
43
RSCanner: rapid assessment and visualization of RNA structure content.
- Published in:
- Bioinformatics, 2023, v. 39, n. 3, p. 1, doi. 10.1093/bioinformatics/btad111
- By:
- Publication type:
- Article
44
AMIGOS III: pseudo-torsion angle visualization and motif-based structure comparison of nucleic acids.
- Published in:
- Bioinformatics, 2022, v. 38, n. 10, p. 2937, doi. 10.1093/bioinformatics/btac207
- By:
- Publication type:
- Article
45
The E3 ligase Riplet promotes RIG-I signaling independent of RIG-I oligomerization.
- Published in:
- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-42982-0
- By:
- Publication type:
- Article
46
The SMN complex drives structural changes in human snRNAs to enable snRNP assembly.
- Published in:
- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-42324-0
- By:
- Publication type:
- Article
47
Single-molecule analysis of Mss116-mediated group II intron folding.
- Published in:
- Nature, 2010, v. 467, n. 7318, p. 935, doi. 10.1038/nature09422
- By:
- Publication type:
- Article
48
Selective RNA targeting and regulated signaling by RIG-I is controlled by coordination of RNA and ATP binding.
- Published in:
- Nucleic Acids Research, 2017, v. 45, n. 3, p. 1442, doi. 10.1093/nar/gkw816
- By:
- Publication type:
- Article
49
The RIG-I ATPase core has evolved a functional requirement for allosteric stabilization by the Pincer domain.
- Published in:
- Nucleic Acids Research, 2014, v. 42, n. 18, p. 11601, doi. 10.1093/nar/gku817
- By:
- Publication type:
- Article
50
Dicer-related helicase 3 forms an obligate dimer for recognizing 22G-RNA.
- Published in:
- Nucleic Acids Research, 2014, v. 42, n. 6, p. 3919, doi. 10.1093/nar/gkt1383
- By:
- Publication type:
- Article