Works by Pybus, Oliver G.

Results: 128
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    Genomic Epidemiology of Early SARS-CoV-2 Transmission Dynamics, Gujarat, India.

    Published in:
    Emerging Infectious Diseases, 2022, v. 28, n. 4, p. 751, doi. 10.3201/eid2804.212053
    By:
    • Raghwani, Jayna;
    • du Plessis, Louis;
    • McCrone, John T.;
    • Hill, Sarah C.;
    • Parag, Kris V.;
    • Thézé, Julien;
    • Kumar, Dinesh;
    • Puvar, Apurva;
    • Pandit, Ramesh;
    • Pybus, Oliver G.;
    • Fournié, Guillaume;
    • Joshi, Madhvi;
    • Joshi, Chaitanya
    Publication type:
    Article
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    Local Transmission of SARS-CoV-2 Lineage B.1.1.7, Brazil, December 2020.

    Published in:
    Emerging Infectious Diseases, 2021, v. 27, n. 3, p. 970, doi. 10.3201/eid2703.210038
    By:
    • Morales Claro, Ingra;
    • da Silva Sales, Flavia Cristina;
    • Severo Ramundo, Mariana;
    • Candido, Darlan S.;
    • Silva, Camila A. M.;
    • de Jesus, Jaqueline Goes;
    • Manuli, Erika R.;
    • de Oliveira, Cristina Mendes;
    • Scarpelli, Luciano;
    • Campana, Gustavo;
    • Pybus, Oliver G.;
    • Cerdeira Sabino, Ester;
    • Rodrigues Faria, Nuno;
    • Eduardo Levi, José;
    • Claro, Ingra Morales;
    • Ramundo, Mariana Severo;
    • Sabino, Ester Cerdeira;
    • Faria, Nuno Rodrigues;
    • Levi, José Eduardo
    Publication type:
    Article
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    Taming the BEAST--A Community Teaching Material Resource for BEAST 2.

    Published in:
    Systematic Biology, 2018, v. 67, n. 1, p. 170, doi. 10.1093/sysbio/syx060
    By:
    • BARIDO-SOTTANI, JOËLLE;
    • BOŠKOVÁ, VERONIKA;
    • DU PLESSIS, LOUIS;
    • KÜHNERT, DENISE;
    • MAGNUS, CARSTEN;
    • MITOV, VENELIN;
    • MÜLLER, NICOLA F.;
    • PEČERSKA, JŪLIJA;
    • RASMUSSEN, DAVID A.;
    • CHI ZHANG;
    • DRUMMOND, ALEXEI J.;
    • HEATH, TRACY A.;
    • PYBUS, OLIVER G.;
    • VAUGHAN, TIMOTHY G.;
    • STADLER, TANJA
    Publication type:
    Article
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    Seasonal dynamics of the wild rodent faecal virome.

    Published in:
    Molecular Ecology, 2023, v. 32, n. 17, p. 4763, doi. 10.1111/mec.16778
    By:
    • Raghwani, Jayna;
    • Faust, Christina L.;
    • François, Sarah;
    • Nguyen, Dung;
    • Marsh, Kirsty;
    • Raulo, Aura;
    • Hill, Sarah C.;
    • Parag, Kris V.;
    • Simmonds, Peter;
    • Knowles, Sarah C. L.;
    • Pybus, Oliver G.
    Publication type:
    Article
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    Phylodynamics of H5N1 avian influenza virus in Indonesia.

    Published in:
    Molecular Ecology, 2012, v. 21, n. 12, p. 3062, doi. 10.1111/j.1365-294X.2012.05577.x
    By:
    • LAM, TOMMY TSAN-YUK;
    • HON, CHUNG-CHAU;
    • LEMEY, PHILIPPE;
    • PYBUS, OLIVER G.;
    • SHI, MANG;
    • TUN, HEIN MIN;
    • LI, JUN;
    • JIANG, JINGWEI;
    • HOLMES, EDWARD C.;
    • LEUNG, FREDERICK CHI-CHING
    Publication type:
    Article
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    Distinct rates and patterns of spread of the major HIV-1 subtypes in Central and East Africa.

    Published in:
    PLoS Pathogens, 2019, v. 15, n. 12, p. 1, doi. 10.1371/journal.ppat.1007976
    By:
    • Faria, Nuno R.;
    • Vidal, Nicole;
    • Lourenco, José;
    • Raghwani, Jayna;
    • Sigaloff, Kim C. E.;
    • Tatem, Andy J.;
    • van de Vijver, David A. M.;
    • Pineda-Peña, Andrea-Clemencia;
    • Rose, Rebecca;
    • Wallis, Carole L.;
    • Ahuka-Mundeke, Steve;
    • Muyembe-Tamfum, Jean-Jacques;
    • Muwonga, Jérémie;
    • Suchard, Marc A.;
    • Rinke de Wit, Tobias F.;
    • Hamers, Raph L.;
    • Ndembi, Nicaise;
    • Baele, Guy;
    • Peeters, Martine;
    • Pybus, Oliver G.
    Publication type:
    Article
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    Epidemiological data from the COVID-19 outbreak, real-time case information.

    Published in:
    Scientific Data, 2020, v. 7, n. 1, p. 1, doi. 10.1038/s41597-020-0448-0
    By:
    • Xu, Bo;
    • Gutierrez, Bernardo;
    • Mekaru, Sumiko;
    • Sewalk, Kara;
    • Goodwin, Lauren;
    • Loskill, Alyssa;
    • Cohn, Emily L.;
    • Hswen, Yulin;
    • Hill, Sarah C.;
    • Cobo, Maria M.;
    • Zarebski, Alexander E.;
    • Li, Sabrina;
    • Wu, Chieh-Hsi;
    • Hulland, Erin;
    • Morgan, Julia D.;
    • Wang, Lin;
    • O'Brien, Katelynn;
    • Scarpino, Samuel V.;
    • Brownstein, John S.;
    • Pybus, Oliver G.
    Publication type:
    Article
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    The Molecular Population Genetics of HLV-1 Group O.

    Published in:
    Genetics, 2004, v. 167, n. 3, p. 1059, doi. 10.1534/genetics.104.026666
    By:
    • Lemey, Philippe;
    • Pybus, Oliver G.;
    • Rambaut, Andrew;
    • Drummond, Alexei J.;
    • Robertson, David L.;
    • Roques, Pierre;
    • Worobey, Michael;
    • Vandamme, Anne-Mieke
    Publication type:
    Article
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    A naturally protective epitope of limited variability as an influenza vaccine target.

    Published in:
    Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-06228-8
    By:
    • Thompson, Craig P.;
    • Lourenço, José;
    • Walters, Adam A.;
    • Obolski, Uri;
    • Edmans, Matthew;
    • Palmer, Duncan S.;
    • Kooblall, Kreepa;
    • Carnell, George W.;
    • O’Connor, Daniel;
    • Bowden, Thomas A.;
    • Pybus, Oliver G.;
    • Pollard, Andrew J.;
    • Temperton, Nigel J.;
    • Lambe, Teresa;
    • Gilbert, Sarah C.;
    • Gupta, Sunetra
    Publication type:
    Article
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    Transmission dynamics of re-emerging rabies in domestic dogs of rural China.

    Published in:
    PLoS Pathogens, 2018, v. 14, n. 12, p. 1, doi. 10.1371/journal.ppat.1007392
    By:
    • Tian, Huaiyu;
    • Yang, Qiqi;
    • Li, Yidan;
    • Feng, Yun;
    • Yang, Weihong;
    • Zhang, Yuzhen;
    • Zhang, Yunzhi;
    • Zhang, Hailin;
    • Vrancken, Bram;
    • Gill, Mandev S.;
    • Lemey, Philippe;
    • Dellicour, Simon;
    • Cazelles, Bernard;
    • Tan, Hua;
    • Pybus, Oliver G.;
    • Stenseth, Nils Chr.
    Publication type:
    Article
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    Genome-wide evolutionary dynamics of influenza B viruses on a global scale.

    Published in:
    PLoS Pathogens, 2017, v. 13, n. 12, p. 1, doi. 10.1371/journal.ppat.1006749
    By:
    • Langat, Pinky;
    • Edwards, Stephanie;
    • Gall, Astrid;
    • Kellam, Paul;
    • Watson, Simon J.;
    • Raghwani, Jayna;
    • Pybus, Oliver G.;
    • Rambaut, Andrew;
    • Dudas, Gytis;
    • Bedford, Trevor;
    • Bowden, Thomas A.;
    • Daniels, Rodney;
    • McCauley, John;
    • Russell, Colin
    Publication type:
    Article
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    New findings regarding the epidemic history and population dynamics of Japan-indigenous genotype 3 hepatitis E virus inferred by molecular evolution.

    Published in:
    Liver International, 2012, v. 32, n. 4, p. 675, doi. 10.1111/j.1478-3231.2011.02728.x
    By:
    • Nakano, Tatsunori;
    • Takahashi, Kazuaki;
    • Pybus, Oliver G.;
    • Hashimoto, Naoaki;
    • Kato, Hideaki;
    • Okano, Hiroshi;
    • Kobayashi, Makoto;
    • Fujita, Naoki;
    • Shiraki, Katsuya;
    • Takei, Yoshiyuki;
    • Ayada, Minoru;
    • Arai, Masahiro;
    • Okamoto, Hiroaki;
    • Mishiro, Shunji
    Publication type:
    Article
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    Epidemiological hypothesis testing using a phylogeographic and phylodynamic framework.

    Published in:
    Nature Communications, 2020, v. 11, n. 1, p. N.PAG, doi. 10.1038/s41467-020-19122-z
    By:
    • Dellicour, Simon;
    • Lequime, Sebastian;
    • Vrancken, Bram;
    • Gill, Mandev S.;
    • Bastide, Paul;
    • Gangavarapu, Karthik;
    • Matteson, Nathaniel L.;
    • Tan, Yi;
    • du Plessis, Louis;
    • Fisher, Alexander A.;
    • Nelson, Martha I.;
    • Gilbert, Marius;
    • Suchard, Marc A.;
    • Andersen, Kristian G.;
    • Grubaugh, Nathan D.;
    • Pybus, Oliver G.;
    • Lemey, Philippe
    Publication type:
    Article
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    Molecular and genomic investigation of an urban outbreak of dengue virus serotype 2 in Angola, 2017–2019.

    Published in:
    PLoS Neglected Tropical Diseases, 2022, v. 16, n. 5, p. 1, doi. 10.1371/journal.pntd.0010255
    By:
    • Neto, Zoraima;
    • Martinez, Pedro A.;
    • Hill, Sarah C.;
    • Jandondo, Domingos;
    • Thézé, Julien;
    • Mirandela, Marinela;
    • Aguiar, Renato Santana;
    • Xavier, Joilson;
    • dos Santos Sebastião, Cruz;
    • Cândido, Ana Luísa Micolo;
    • Vaz, Filipa;
    • Castro, Gisel Reyes;
    • Paixão, Joana Paula;
    • Loman, Nicholas J.;
    • Lemey, Philippe;
    • Pybus, Oliver G.;
    • Vasconcelos, Jocelyne;
    • Faria, Nuno Rodrigues;
    • de Morais, Joana
    Publication type:
    Article
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    A computational method for the identification of Dengue, Zika and Chikungunya virus species and genotypes.

    Published in:
    PLoS Neglected Tropical Diseases, 2019, v. 13, n. 5, p. 1, doi. 10.1371/journal.pntd.0007231
    By:
    • Fonseca, Vagner;
    • Libin, Pieter J. K.;
    • Theys, Kristof;
    • Faria, Nuno R.;
    • Nunes, Marcio R. T.;
    • Restovic, Maria I.;
    • Freire, Murilo;
    • Giovanetti, Marta;
    • Cuypers, Lize;
    • Nowé, Ann;
    • Abecasis, Ana;
    • Deforche, Koen;
    • Santiago, Gilberto A.;
    • Siqueira, Isadora C. de;
    • San, Emmanuel J.;
    • Machado, Kaliane C. B.;
    • Azevedo, Vasco;
    • Filippis, Ana Maria Bispo-de;
    • Cunha, Rivaldo Venâncio da;
    • Pybus, Oliver G.
    Publication type:
    Article
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