Works by Putonti, Catherine

Results: 34

Clusters of alpha satellite on human chromosome 21 are dispersed far onto the short arm and lack ancient layers.

Published in:

Chromosome Research, 2016, v. 24, n. 3, p. 421, doi. 10.1007/s10577-016-9530-z

By:

Ziccardi, William;
Zhao, Chongjian;
Shepelev, Valery;
Uralsky, Lev;
Alexandrov, Ivan;
Andreeva, Tatyana;
Rogaev, Evgeny;
Bun, Christopher;
Miller, Emily;
Putonti, Catherine;
Doering, Jeffrey

Publication type:

Article

Effect of the mutation rate and background size on the quality of pathogen identification.

Published in:

Bioinformatics, 2007, v. 23, n. 20, p. 2665, doi. 10.1093/bioinformatics/btm420

By:

Reed, Chris;
Fofanov, Viacheslav;
Putonti, Catherine;
Chumakov, Sergei;
Slezak, Tom;
Fofanov, Yuriy

Publication type:

Article

Escherichia coli and Pseudomonas aeruginosa Isolated From Urine of Healthy Bovine Have Potential as Emerging Human and Bovine Pathogens.

Published in:

Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.764760

By:

Giannattasio-Ferraz, Silvia;
Ene, Adriana;
Gomes, Vitor Júnio;
Queiroz, Cid Oliveira;
Maskeri, Laura;
Oliveira, André Penido;
Putonti, Catherine;
Barbosa-Stancioli, Edel F.

Publication type:

Article

Characterization of a protozoan Phosducin-like protein-3 (PhLP-3) reveals conserved redox activity.

Published in:

PLoS ONE, 2018, v. 13, n. 12, p. 1, doi. 10.1371/journal.pone.0209699

By:

Kooistra, Rachel L.;
David, Robin;
Ruiz, Ana C.;
Powers, Sean W.;
Haselton, Kyle J.;
Kiernan, Kaitlyn;
Blagborough, Andrew M.;
Solamen, Ligin;
Olsen, Kenneth W.;
Putonti, Catherine;
Kanzok, Stefan M.

Publication type:

Article

Ultraspecific probes for high throughput HLA typing.

Published in:

BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-85

By:

Chen Feng;
Putonti, Catherine;
Meizhuo Zhang;
Eggers, Rick;
Mitra, Rahul;
Hogan, Mike;
Jayaraman, Krishna;
Fofanov, Yuriy

Publication type:

Article

Genome sequences and annotation of two urinary isolates of E. coli.

Published in:

Standards in Genomic Sciences, 2016, p. 1, doi. 10.1186/s40793-016-0202-6

By:

Price, Travis K.;
Mehrtash, Arya;
Kalesinskas, Laurynas;
Malk, Kema;
Hilt, Evann E.;
Putonti, Catherine;
Wolfe, Alan J.

Publication type:

Article

Investigation of Plasmids Among Clinical Staphylococcus aureus and Staphylococcus haemolyticus Isolates From Egypt.

Published in:

Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.659116

By:

Mores, Carine R.;
Montelongo, Cesar;
Putonti, Catherine;
Wolfe, Alan J.;
Abouelfetouh, Alaa

Publication type:

Article

Bacteriophages isolated from Lake Michigan demonstrate broad host-range across several bacterial phyla.

Published in:

Virology Journal, 2015, v. 12, n. 1, p. 1, doi. 10.1186/s12985-015-0395-0

By:

Malki, Kema;
Kula, Alex;
Bruder, Katherine;
Sible, Emily;
Hatzopoulos, Thomas;
Steidel, Stephanie;
Watkins, Siobhan C.;
Putonti, Catherine

Publication type:

Article

Bacteriophages isolated from Lake Michigan demonstrate broad host-range across several bacterial phyla.

Published in:

Virology Journal, 2015, v. 12, n. 1, p. 1, doi. 10.1186/s12985-015-0395-0

By:

Malki, Kema;
Kula, Alex;
Bruder, Katherine;
Sible, Emily;
Hatzopoulos, Thomas;
Steidel, Stephanie;
Watkins, Siobhan C.;
Putonti, Catherine

Publication type:

Article

Culturing of female bladder bacteria reveals an interconnected urogenital microbiota.

Published in:

Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-03968-5

By:

Thomas-White, Krystal;
Forster, Samuel C.;
Kumar, Nitin;
Van Kuiken, Michelle;
Putonti, Catherine;
Stares, Mark D.;
Hilt, Evann E.;
Price, Travis K.;
Wolfe, Alan J.;
Lawley, Trevor D.

Publication type:

Article

Genomes of Gardnerella Strains Reveal an Abundance of Prophages within the Bladder Microbiome.

Published in:

PLoS ONE, 2016, v. 11, n. 11, p. 1, doi. 10.1371/journal.pone.0166757

By:

Malki, Kema;
Shapiro, Jason W.;
Price, Travis K.;
Hilt, Evann E.;
Thomas-White, Krystal;
Sircar, Trina;
Rosenfeld, Amy B.;
Kuffel, Gina;
Zilliox, Michael J.;
Wolfe, Alan J.;
Putonti, Catherine

Publication type:

Article

Rephine.r: a pipeline for correcting gene calls and clusters to improve phage pangenomes and phylogenies.

Published in:

PeerJ, 2021, p. 1, doi. 10.7717/peerj.11950

By:

Shapiro, Jason W.;
Putonti, Catherine

Publication type:

Article

Mimicking prophage induction in the body: induction in the lab with pH gradients.

Published in:

PeerJ, 2020, p. 1, doi. 10.7717/peerj.9718

By:

Miller-Ensminger, Taylor;
Garretto, Andrea;
Stark, Nicole;
Putonti, Catherine

Publication type:

Article

virMine: automated detection of viral sequences from complex metagenomic samples.

Published in:

PeerJ, 2019, p. 1, doi. 10.7717/peerj.6695

By:

Garretto, Andrea;
Hatzopoulos, Thomas;
Putonti, Catherine

Publication type:

Article

Coliphages of the human urinary microbiota.

Published in:

PLoS ONE, 2023, v. 18, n. 4, p. 1, doi. 10.1371/journal.pone.0283930

By:

Crum, Elias;
Merchant, Zubia;
Ene, Adriana;
Miller-Ensminger, Taylor;
Johnson, Genevieve;
Wolfe, Alan J.;
Putonti, Catherine

Publication type:

Article

S-plot2: Rapid Visual and Statistical Analysis of Genomic Sequences.

Published in:

Evolutionary Bioinformatics, 2018, n. 14, p. 1, doi. 10.1177/1176934318797354

By:

Kalesinskas, Laurynas;
Cudone, Evan;
Fofanov, Yuriy;
Putonti, Catherine

Publication type:

Article

A Polyglot Approach to Bioinformatics Data Integration: A Phylogenetic Analysis of HIV-1.

Published in:

Evolutionary Bioinformatics, 2016, n. 12, p. 23, doi. 10.4137/EBO.s32757

By:

reisman, steven;
Hatzopoulos, thomas;
Läufer, Konstantin;
thiruvathukal, George K.;
Putonti, Catherine

Publication type:

Article

MiIP: The Monomer Identification and Isolation Program.

Published in:

Evolutionary Bioinformatics, 2012, n. 8, p. 293, doi. 10.4137/EBO.S9248

By:

Bun, Christopher;
Ziccardi, William;
Doering, Jeffrey;
Putonti, Catherine

Publication type:

Article

Comparative genomic analysis of clinical Enterococcus faecalis distinguishes strains isolated from the bladder.

Published in:

BMC Genomics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12864-023-09818-z

By:

Hochstedler-Kramer, Baylie R.;
Ene, Adriana;
Putonti, Catherine;
Wolfe, Alan J.

Publication type:

Article

When Plaquing Is Not Possible: Computational Methods for Detecting Induced Phages.

Published in:

Viruses (1999-4915), 2023, v. 15, n. 2, p. 420, doi. 10.3390/v15020420

By:

Miller-Ensminger, Taylor;
Johnson, Genevieve;
Banerjee, Swarnali;
Putonti, Catherine

Publication type:

Article

Discriminating between JCPyV and BKPyV in Urinary Virome Data Sets.

Published in:

Viruses (1999-4915), 2021, v. 13, n. 6, p. 1041, doi. 10.3390/v13061041

By:

Mormando, Rita;
Wolfe, Alan J.;
Putonti, Catherine

Publication type:

Article

Examination of Staphylococcus aureus Prophages Circulating in Egypt.

Published in:

Viruses (1999-4915), 2021, v. 13, n. 2, p. 337, doi. 10.3390/v13020337

By:

Ene, Adriana;
Miller-Ensminger, Taylor;
Mores, Carine R.;
Giannattasio-Ferraz, Silvia;
Wolfe, Alan J.;
Abouelfetouh, Alaa;
Putonti, Catherine;
Turner, Dann

Publication type:

Article

Pseudomonas PB1-Like Phages: Whole Genomes from Metagenomes Offer Insight into an Abundant Group of Bacteriophages.

Published in:

Viruses (1999-4915), 2018, v. 10, n. 6, p. 331, doi. 10.3390/v10060331

By:

Watkins, Siobhan C.;
Sible, Emily;
Putonti, Catherine

Publication type:

Article

PCR detection of nearly any dengue virus strain using a highly sensitive primer 'cocktail'.

Published in:

FEBS Journal, 2011, v. 278, n. 10, p. 1676, doi. 10.1111/j.1742-4658.2011.08091.x

By:

Gijavanekar, Charul;
Añez-Lingerfelt, Maria;
Feng, Chen;
Putonti, Catherine;
Fox, George E.;
Sabo, Aniko;
Fofanov, Yuriy;
Willson, Richard C.

Publication type:

Article

Human-blind probes and primers for dengue virus identification.

Published in:

FEBS Journal, 2006, v. 273, n. 2, p. 398, doi. 10.1111/j.1742-4658.2005.05074.x

By:

Putonti, Catherine;
Chumakov, Sergei;
Mitra, Rahul;
Fox, George E.;
Willson, Richard C.;
Fofanov, Yuriy

Publication type:

Article

A Computational Tool for the Genomic Identification of Regions of Unusual Compositional Properties and Its Utilization in the Detection of Horizontally Transferred Sequences.

Published in:

Molecular Biology & Evolution, 2006, v. 23, n. 10, p. 1863, doi. 10.1093/molbev/msl053

By:

Putonti, Catherine;
Yi Luo;
Katili, Charles;
Chumakov, Sergey;
Fox, George E.;
Graur, Dan;
Fofanov, Yuriy

Publication type:

Article

UPΦ phages, a new group of filamentous phages found in several members of Enterobacteriales.

Published in:

Virus Evolution, 2020, v. 6, n. 1, p. 1, doi. 10.1093/ve/veaa030

By:

Shapiro, Jason W;
Putonti, Catherine

Publication type:

Article

Introducing Lu-1, a Novel Lactobacillus jensenii Phage Abundant in the Urogenital Tract.

Published in:

PLoS ONE, 2020, v. 15, n. 6, p. 1, doi. 10.1371/journal.pone.0234159

By:

Miller-Ensminger, Taylor;
Mormando, Rita;
Maskeri, Laura;
Shapiro, Jason W.;
Wolfe, Alan J.;
Putonti, Catherine

Publication type:

Article

CBDB: The codon bias database.

Published in:

BMC Bioinformatics, 2012, v. 13, n. 1, p. 62, doi. 10.1186/1471-2105-13-62

By:

Hilterbrand, Adam;
Saelens, Joseph;
Putonti, Catherine

Publication type:

Article

Cataloging the phylogenetic diversity of human bladder bacterial isolates.

Published in:

Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-024-03216-8

By:

Du, Jingjie;
Khemmani, Mark;
Halverson, Thomas;
Ene, Adriana;
Limeira, Roberto;
Tinawi, Lana;
Hochstedler-Kramer, Baylie R.;
Noronha, Melline Fontes;
Putonti, Catherine;
Wolfe, Alan J.

Publication type:

Article

Cataloging variation in 16S rRNA gene sequences of female urobiome bacteria.

Published in:

Frontiers in Urology, 2024, p. 01, doi. 10.3389/fruro.2023.1270509

By:

Baddoo, Genevieve;
Ene, Adriana;
Merchant, Zubia;
Banerjee, Swarnali;
Wolfe, Alan J.;
Putonti, Catherine

Publication type:

Article

Vagococcus fluvialis isolation and sequencing from urine of healthy cattle .

Published in:

G3: Genes | Genomes | Genetics, 2021, v. 11, n. 1, p. 1, doi. 10.1093/g3journal/jkaa034

By:

Giannattasio-Ferraz, Silvia;
Ene, Adriana;
Maskeri, Laura;
Oliveira, Andre´ Penido;
Barbosa-Stancioli, Edel F.;
Putonti, Catherine

Publication type:

Article

Where does Neisseria acquire foreign DNA from: an examination of the source of genomic and pathogenic islands and the evolution of the Neisseria genus.

Published in:

BMC Evolutionary Biology, 2013, v. 13, n. 1, p. 1, doi. 10.1186/1471-2148-13-184

By:

Putonti, Catherine;
Nowicki, Bogdan;
Shaffer, Michael;
Fofanov, Yuriy;
Nowicki, Stella

Publication type:

Article

Adaptive evolution and inherent tolerance toextreme thermal environments.

Published in:

BMC Evolutionary Biology, 2010, v. 10, p. 75, doi. 10.1186/1471-2148-10-75

By:

Cox, Jennifer;
Schubert, Alyxandria M.;
Travisano, Michael;
Putonti, Catherine

Publication type:

Article