Found: 16

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  • VDJviz: a versatile browser for immunogenomics data.

    Published in:
    BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-2799-7
    By:
    • Bagaev, Dmitriy V.;
    • Zvyagin, Ivan V.;
    • Putintseva, Ekaterina V.;
    • Izraelson, Mark;
    • Britanova, Olga V.;
    • Chudakov, Dmitriy M.;
    • Shugay, Mikhail
    Publication type:
    Article

  • VDJtools: Unifying Post-analysis of T Cell Receptor Repertoires.

    Published in:
    PLoS Computational Biology, 2015, v. 11, n. 11, p. 1, doi. 10.1371/journal.pcbi.1004503
    By:
    • Shugay, Mikhail;
    • Bagaev, Dmitriy V.;
    • Turchaninova, Maria A.;
    • Bolotin, Dmitriy A.;
    • Britanova, Olga V.;
    • Putintseva, Ekaterina V.;
    • Pogorelyy, Mikhail V.;
    • Nazarov, Vadim I.;
    • Zvyagin, Ivan V.;
    • Kirgizova, Vitalina I.;
    • Kirgizov, Kirill I.;
    • Skorobogatova, Elena V.;
    • Chudakov, Dmitriy M.
    Publication type:
    Article

  • Mother and child T cell receptor repertoires: deep profiling study.

    Published in:
    Frontiers in Immunology, 2013, v. 4, p. 1, doi. 10.3389/fimmu.2013.00463
    By:
    • Putintseva, Ekaterina V.;
    • Britanova, Olga V.;
    • Staroverov, Dmitriy B.;
    • Merzlyak, Ekaterina M.;
    • Turchaninova, Maria A.;
    • Shugay, Mikhail;
    • Bolotin, Dmitriy A.;
    • Pogorelyy, Mikhail V.;
    • Mamedov, Ilgar Z.;
    • Bobrynina, Vlasta;
    • Maschan, Mikhail;
    • Lebedev, Yuri B.;
    • Chudakov, Dmitriy M.
    Publication type:
    Article

  • Huge overlap of individual TCR beta repertoires.

    Published in:
    Frontiers in Immunology, 2013, v. 4, p. 1, doi. 10.3389/fimmu.2013.00466
    By:
    • Shugay, Mikhail;
    • Bolotin, Dmitriy A.;
    • Putintseva, Ekaterina V.;
    • Pogorelyy, Mikhail V.;
    • Mamedov, Ilgar Z.;
    • Chudakov, Dmitriy M.
    Publication type:
    Article

  • Preparing unbiased T-cell receptor and antibody cDNA libraries for the deep next generation sequencing profiling.

    Published in:
    Frontiers in Immunology, 2013, v. 4, p. 1, doi. 10.3389/fimmu.2013.00456
    By:
    • Mamedov, Ilgar Z.;
    • Britanova, Olga V.;
    • Zvyagin, Ivan V.;
    • Turchaninova, Maria A.;
    • Bolotin, Dmitriy A.;
    • Putintseva, Ekaterina V.;
    • Lebedev, Yuriy B.;
    • Chudakov, Dmitriy M.
    Publication type:
    Article

  • Pairing of T-cell receptor chains via emulsion PCR.

    Published in:
    European Journal of Immunology, 2013, v. 43, n. 9, p. 2507, doi. 10.1002/eji.201343453
    By:
    • Turchaninova, Maria A.;
    • Britanova, Olga V.;
    • Bolotin, Dmitriy A.;
    • Shugay, Mikhail;
    • Putintseva, Ekaterina V.;
    • Staroverov, Dmitriy B.;
    • Sharonov, George;
    • Shcherbo, Dmitriy;
    • Zvyagin, Ivan V.;
    • Mamedov, Ilgar Z.;
    • Linnemann, Carsten;
    • Schumacher, Ton N.;
    • Chudakov, Dmitriy M.
    Publication type:
    Article

  • An experimental assay of the interactions of amino acids from orthologous sequences shaping a complex fitness landscape.

    Published in:
    PLoS Genetics, 2019, v. 15, n. 4, p. 1, doi. 10.1371/journal.pgen.1008079
    By:
    • Pokusaeva, Victoria O.;
    • Usmanova, Dinara R.;
    • Putintseva, Ekaterina V.;
    • Espinar, Lorena;
    • Sarkisyan, Karen S.;
    • Mishin, Alexander S.;
    • Bogatyreva, Natalya S.;
    • Ivankov, Dmitry N.;
    • Akopyan, Arseniy V.;
    • Avvakumov, Sergey Ya.;
    • Povolotskaya, Inna S.;
    • Filion, Guillaume J.;
    • Carey, Lucas B.;
    • Kondrashov, Fyodor A.
    Publication type:
    Article

  • MiXCR: software for comprehensive adaptive immunity profiling.

    Published in:
    Nature Methods, 2015, v. 12, n. 5, p. 380, doi. 10.1038/nmeth.3364
    By:
    • Bolotin, Dmitriy A;
    • Poslavsky, Stanislav;
    • Mitrophanov, Igor;
    • Shugay, Mikhail;
    • Mamedov, Ilgar Z;
    • Putintseva, Ekaterina V;
    • Chudakov, Dmitriy M
    Publication type:
    Article

  • Towards error-free profiling of immune repertoires.

    Published in:
    Nature Methods, 2014, v. 11, n. 6, p. 653, doi. 10.1038/nmeth.2960
    By:
    • Shugay, Mikhail;
    • Britanova, Olga V;
    • Merzlyak, Ekaterina M;
    • Turchaninova, Maria A;
    • Mamedov, Ilgar Z;
    • Tuganbaev, Timur R;
    • Bolotin, Dmitriy A;
    • Staroverov, Dmitry B;
    • Putintseva, Ekaterina V;
    • Plevova, Karla;
    • Linnemann, Carsten;
    • Shagin, Dmitriy;
    • Pospisilova, Sarka;
    • Lukyanov, Sergey;
    • Schumacher, Ton N;
    • Chudakov, Dmitriy M
    Publication type:
    Article

  • MiTCR: software for T-cell receptor sequencing data analysis.

    Published in:
    Nature Methods, 2013, v. 10, n. 9, p. 813, doi. 10.1038/nmeth.2555
    By:
    • Bolotin, Dmitriy A;
    • Shugay, Mikhail;
    • Mamedov, Ilgar Z;
    • Putintseva, Ekaterina V;
    • Turchaninova, Maria A;
    • Zvyagin, Ivan V;
    • Britanova, Olga V;
    • Chudakov, Dmitriy M
    Publication type:
    Article

  • Heterogeneity of the GFP fitness landscape and data-driven protein design.

    Published in:
    eLife, 2022, p. 1, doi. 10.7554/eLife.75842
    By:
    • Gonzalez Somermeyer, Louisa;
    • Fleiss, Aubin;
    • Mishin, Alexander S.;
    • Bozhanova, Nina G.;
    • Igolkina, Anna A.;
    • Meiler, Jens;
    • Pujol, Maria-Elisenda Alaball;
    • Putintseva, Ekaterina V.;
    • Sarkisyan, Karen S.;
    • Kondrashov, Fyodor A.
    Publication type:
    Article

  • TCR usage, gene expression and function of two distinct FOXP3<sup>+</sup>Treg subsets within CD4<sup>+</sup>CD25<sup>hi</sup> T cells identified by expression of CD39 and CD45RO.

    Published in:
    Immunology & Cell Biology, 2016, v. 94, n. 3, p. 293, doi. 10.1038/icb.2015.90
    By:
    • Ye, Lingying;
    • Goodall, Jane C;
    • Zhang, Libin;
    • Putintseva, Ekaterina V;
    • Lam, Brian;
    • Jiang, Lei;
    • Liu, Wei;
    • Yin, Jian;
    • Lin, Li;
    • Li, Ting;
    • Wu, Xin;
    • Yeo, Giles;
    • Shugay, Mikhail;
    • Chudakov, Dmitriy M;
    • Gaston, Hill;
    • Xu, Huji
    Publication type:
    Article

  • Insertion of the voltage-sensitive domain into circularly permuted red fluorescent protein as a design for genetically encoded voltage sensor.

    Published in:
    PLoS ONE, 2017, v. 12, n. 9, p. 1, doi. 10.1371/journal.pone.0184225
    By:
    • Kost, Liubov A.;
    • Nikitin, Evgeny S.;
    • Ivanova, Violetta O.;
    • Sung, Uhna;
    • Putintseva, Ekaterina V.;
    • Chudakov, Dmitry M.;
    • Balaban, Pavel M.;
    • Lukyanov, Konstantin A.;
    • Bogdanov, Alexey M.
    Publication type:
    Article

  • Comparative analysis of murine T‐cell receptor repertoires.

    Published in:
    Immunology, 2018, v. 153, n. 2, p. 133, doi. 10.1111/imm.12857
    By:
    • Izraelson, Mark;
    • Nakonechnaya, Tatiana O.;
    • Moltedo, Bruno;
    • Egorov, Evgeniy S.;
    • Kasatskaya, Sofya A.;
    • Putintseva, Ekaterina V.;
    • Mamedov, Ilgar Z.;
    • Staroverov, Dmitriy B.;
    • Shemiakina, Irina I.;
    • Zakharova, Maria Y.;
    • Davydov, Alexey N.;
    • Bolotin, Dmitriy A.;
    • Shugay, Mikhail;
    • Chudakov, Dmitriy M.;
    • Rudensky, Alexander Y.;
    • Britanova, Olga V.
    Publication type:
    Article

  • Convergence, plasticity, and tissue residence of regulatory T cell response via TCR repertoire prism.

    Published in:
    eLife, 2024, p. 1, doi. 10.7554/eLife.89382
    By:
    • Nakonechnaya, Tatyana O.;
    • Moltedo, Bruno;
    • Putintseva, Ekaterina V.;
    • Leyn, Sofya;
    • Bolotin, Dmitry A.;
    • Britanova, Olga V.;
    • Shugay, Mikhail;
    • Chudakov, Dmitriy M.
    Publication type:
    Article

  • Antigen receptor repertoire profiling from RNA-seq data.

    Published in:
    Nature Biotechnology, 2017, v. 35, n. 10, p. 908, doi. 10.1038/nbt.3979
    By:
    • Bolotin, Dmitriy A;
    • Poslavsky, Stanislav;
    • Davydov, Alexey N;
    • Frenkel, Felix E;
    • Fanchi, Lorenzo;
    • Zolotareva, Olga I;
    • Hemmers, Saskia;
    • Putintseva, Ekaterina V;
    • Obraztsova, Anna S;
    • Shugay, Mikhail;
    • Ataullakhanov, Ravshan I;
    • Rudensky, Alexander Y;
    • Schumacher, Ton N;
    • Chudakov, Dmitriy M
    Publication type:
    Article