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Improving replicability in single-cell RNA-Seq cell type discovery with Dune.
- Published in:
- BMC Bioinformatics, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s12859-024-05814-6
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- Publication type:
- Article
Successional adaptive strategies revealed by correlating arbuscular mycorrhizal fungal abundance with host plant gene expression.
- Published in:
- Molecular Ecology, 2023, v. 32, n. 10, p. 2674, doi. 10.1111/mec.16343
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- Publication type:
- Article
Defining Patient-Level Molecular Heterogeneity in Psoriasis Vulgaris Based on Single-Cell Transcriptomics.
- Published in:
- Frontiers in Immunology, 2022, v. 13, p. 1, doi. 10.3389/fimmu.2022.842651
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- Publication type:
- Article
Co-occurrence networks reveal more complexity than community composition in resistance and resilience of microbial communities.
- Published in:
- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-31343-y
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- Publication type:
- Article
Classification of human chronic inflammatory skin disease based on single-cell immune profiling.
- Published in:
- Science Immunology, 2022, v. 7, n. 70, p. 1, doi. 10.1126/sciimmunol.abl9165
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- Publication type:
- Article
Cobolt: integrative analysis of multimodal single-cell sequencing data.
- Published in:
- Genome Biology, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s13059-021-02556-z
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- Publication type:
- Article
Cell Wall Compositions of Sorghum bicolor Leaves and Roots Remain Relatively Constant Under Drought Conditions.
- Published in:
- Frontiers in Plant Science, 2021, v. 12, p. 1, doi. 10.3389/fpls.2021.747225
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- Publication type:
- Article
Genome-resolved metagenomics reveals role of iron metabolism in drought-induced rhizosphere microbiome dynamics.
- Published in:
- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-23553-7
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- Publication type:
- Article
mbkmeans: Fast clustering for single cell data using mini-batch k-means.
- Published in:
- PLoS Computational Biology, 2021, v. 17, n. 1, p. 1, doi. 10.1371/journal.pcbi.1008625
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- Publication type:
- Article
Fungal community assembly in drought-stressed sorghum shows stochasticity, selection, and universal ecological dynamics.
- Published in:
- Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-019-13913-9
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- Publication type:
- Article
clusterExperiment and RSEC: A Bioconductor package and framework for clustering of single-cell and other large gene expression datasets.
- Published in:
- PLoS Computational Biology, 2018, v. 14, n. 9, p. 1, doi. 10.1371/journal.pcbi.1006378
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- Publication type:
- Article
Can We Trust the Bootstrap in High-dimensions? The Case of Linear Models.
- Published in:
- Journal of Machine Learning Research, 2018, v. 19, n. 1-26, p. 1
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- Publication type:
- Article
APOBEC mutation drives early-onset squamous cell carcinomas in recessive dystrophic epidermolysis bullosa.
- Published in:
- Science Translational Medicine, 2018, v. 10, n. 455, p. 1, doi. 10.1126/scitranslmed.aas9668
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- Publication type:
- Article
Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics.
- Published in:
- BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-4772-0
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- Publication type:
- Article
Pregnancy-induced gene expression changes in vivo among women with rheumatoid arthritis: a pilot study.
- Published in:
- Arthritis Research & Therapy, 2017, v. 19, p. 1, doi. 10.1186/s13075-017-1312-2
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- Publication type:
- Article
Clustering of mRNA-Seq data based on alternative splicing patterns.
- Published in:
- 2017
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- Publication type:
- journal article
Methods and challenges in timing chromosomal abnormalities within cancer samples.
- Published in:
- Bioinformatics, 2013, v. 29, n. 24, p. 3113, doi. 10.1093/bioinformatics/btt546
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- Publication type:
- Article
Unifying Gene Expression Measures from Multiple Platforms Using Factor Analysis.
- Published in:
- PLoS ONE, 2011, v. 6, n. 3, p. 1, doi. 10.1371/journal.pone.0017691
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- Publication type:
- Article
Evaluation of statistical methods fornormalization and differential expression inmRNA-Seq experiments.
- Published in:
- BMC Bioinformatics, 2010, v. 11, p. 94, doi. 10.1186/1471-2105-11-94
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- Publication type:
- Article
Error Distribution for Gene Expression Data.
- Published in:
- Statistical Applications in Genetics & Molecular Biology, 2005, v. 4, n. 1, p. 1, doi. 10.2202/1544-6115.1070
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- Publication type:
- Article