Found: 41

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  • Biomedical Data Repository Concepts and Management Principles.

    Published in:
    Scientific Data, 2024, v. 11, n. 1, p. 1, doi. 10.1038/s41597-024-03449-z
    By:
    • Lin, Dawei;
    • McAuliffe, Matthew;
    • Pruitt, Kim D.;
    • Gururaj, Anupama;
    • Melchior, Christine;
    • Schmitt, Charles;
    • Wright, Susan N.
    Publication type:
    Article

  • The NCBI Comparative Genome Viewer (CGV) is an interactive visualization tool for the analysis of whole-genome eukaryotic alignments.

    Published in:
    PLoS Biology, 2024, v. 22, n. 5, p. 1, doi. 10.1371/journal.pbio.3002405
    By:
    • Rangwala, Sanjida H.;
    • Rudnev, Dmitry V.;
    • Ananiev, Victor V.;
    • Oh, Dong-Ha;
    • Asztalos, Andrea;
    • Benica, Barrett;
    • Borodin, Evgeny A.;
    • Bouk, Nathan;
    • Evgeniev, Vladislav I.;
    • Kodali, Vamsi K.;
    • Lotov, Vadim;
    • Mozes, Eyal;
    • Omelchenko, Marina V.;
    • Savkina, Sofya;
    • Sukharnikov, Ekaterina;
    • Virothaisakun, Joël;
    • Murphy, Terence D.;
    • Pruitt, Kim D.;
    • Schneider, Valerie A.
    Publication type:
    Article

  • Rapid and sensitive detection of genome contamination at scale with FCS-GX.

    Published in:
    Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-024-03198-7
    By:
    • Astashyn, Alexander;
    • Tvedte, Eric S.;
    • Sweeney, Deacon;
    • Sapojnikov, Victor;
    • Bouk, Nathan;
    • Joukov, Victor;
    • Mozes, Eyal;
    • Strope, Pooja K.;
    • Sylla, Pape M.;
    • Wagner, Lukas;
    • Bidwell, Shelby L.;
    • Brown, Larissa C.;
    • Clark, Karen;
    • Davis, Emily W.;
    • Smith-White, Brian;
    • Hlavina, Wratko;
    • Pruitt, Kim D.;
    • Schneider, Valerie A.;
    • Murphy, Terence D.
    Publication type:
    Article

  • GenBank 2024 Update.

    Published in:
    Nucleic Acids Research, 2024, v. 52, n. D1, p. D134, doi. 10.1093/nar/gkad903
    By:
    • Sayers, Eric W;
    • Cavanaugh, Mark;
    • Clark, Karen;
    • Pruitt, Kim D;
    • Sherry, Stephen T;
    • Yankie, Linda;
    • Karsch-Mizrachi, Ilene
    Publication type:
    Article

  • GenBank 2023 update.

    Published in:
    Nucleic Acids Research, 2023, v. 51, n. D1, p. D141, doi. 10.1093/nar/gkac1012
    By:
    • Sayers, Eric W;
    • Cavanaugh, Mark;
    • Clark, Karen;
    • Pruitt, Kim D;
    • Sherry, Stephen T;
    • Yankie, Linda;
    • Karsch-Mizrachi, Ilene
    Publication type:
    Article

  • GenBank.

    Published in:
    Nucleic Acids Research, 2022, v. 50, n. D1, p. D161, doi. 10.1093/nar/gkab1135
    By:
    • Sayers, Eric W;
    • Cavanaugh, Mark;
    • Clark, Karen;
    • Pruitt, Kim D;
    • Schoch, Conrad L;
    • Sherry, Stephen T;
    • Karsch-Mizrachi, Ilene
    Publication type:
    Article

  • GenBank.

    Published in:
    Nucleic Acids Research, 2021, v. 49, n. D1, p. D92, doi. 10.1093/nar/gkaa1023
    By:
    • Sayers, Eric W;
    • Cavanaugh, Mark;
    • Clark, Karen;
    • Pruitt, Kim D;
    • Schoch, Conrad L;
    • Sherry, Stephen T;
    • Karsch-Mizrachi, Ilene
    Publication type:
    Article

  • GenBank.

    Published in:
    Nucleic Acids Research, 2020, v. 48, n. D1, p. D84, doi. 10.1093/nar/gkz956
    By:
    • Sayers, Eric W;
    • Cavanaugh, Mark;
    • Clark, Karen;
    • Ostell, James;
    • Pruitt, Kim D;
    • Karsch-Mizrachi, Ilene
    Publication type:
    Article

  • RefSeq curation and annotation of stop codon recoding in vertebrates.

    Published in:
    Nucleic Acids Research, 2019, v. 47, n. 2, p. 594, doi. 10.1093/nar/gky1234
    By:
    • Rajput, Bhanu;
    • Pruitt, Kim D;
    • Murphy, Terence D
    Publication type:
    Article

  • GenBank.

    Published in:
    Nucleic Acids Research, 2019, v. 47, n. D1, p. D94, doi. 10.1093/nar/gky989
    By:
    • Sayers, Eric W;
    • Cavanaugh, Mark;
    • Clark, Karen;
    • Ostell, James;
    • Pruitt, Kim D;
    • Karsch-Mizrachi, Ilene
    Publication type:
    Article

  • GenBank.

    Published in:
    Nucleic Acids Research, 2018, v. 46, n. D1, p. D741, doi. 10.1093/nar/gkx1094
    By:
    • Benson, Dennis A;
    • Cavanaugh, Mark;
    • Clark, Karen;
    • Karsch-Mizrachi, Ilene;
    • Ostell, James;
    • Pruitt, Kim D;
    • Sayers, Eric W
    Publication type:
    Article

  • Genome assembly and transcriptome resource for river buffalo, Bubalus bubalis (2n = 50).

    Published in:
    GigaScience, 2017, v. 6, n. 10, p. 1, doi. 10.1093/gigascience/gix088
    By:
    • Williams, John L.;
    • Iamartino, Daniela;
    • Pruitt, Kim D.;
    • Sonstegard, Tad;
    • Smith, Timothy P. L.;
    • Wai Yee Low;
    • Biagini, Tommaso;
    • Bomba, Lorenzo;
    • Capomaccio, Stefano;
    • Castiglioni, Bianca;
    • Coletta, Angelo;
    • Corrado, Federica;
    • Ferré, Fabrizio;
    • Iannuzzi, Leopoldo;
    • Lawley, Cynthia;
    • Macciotta, Nicolò;
    • McClure, Matthew;
    • Mancini, Giordano;
    • Matassino, Donato;
    • Mazza, Raffaele
    Publication type:
    Article

  • A curated catalog of canine and equine keratin genes.

    Published in:
    PLoS ONE, 2017, v. 12, n. 8, p. 1, doi. 10.1371/journal.pone.0180359
    By:
    • Balmer, Pierre;
    • Bauer, Anina;
    • Pujar, Shashikant;
    • McGarvey, Kelly M.;
    • Welle, Monika;
    • Galichet, Arnaud;
    • Müller, Eliane J.;
    • Pruitt, Kim D.;
    • Leeb, Tosso;
    • Jagannathan, Vidhya
    Publication type:
    Article

  • A New Chicken Genome Assembly Provides Insight into Avian Genome Structure.

    Published in:
    G3: Genes | Genomes | Genetics, 2017, v. 7, n. 1, p. 109, doi. 10.1534/g3.116.035923
    By:
    • Warren, Wesley C.;
    • Hillier, LaDeana W.;
    • Tomlinson, Chad;
    • Minx, Patrick;
    • Kremitzki, Milinn;
    • Graves, Tina;
    • Markovic, Chris;
    • Bouk, Nathan;
    • Pruitt, Kim D.;
    • Thibaud-Nissen, Francoise;
    • Schneider, Valerie;
    • Mansour, Tamer A.;
    • Brown, C. Titus;
    • Zimin, Aleksey;
    • Hawken, Rachel;
    • Abrahamsen, Mitch;
    • Pyrkosz, Alexis B.;
    • Morisson, Mireille;
    • Fillon, Valerie;
    • Vignal, Alain
    Publication type:
    Article

  • NCBI prokaryotic genome annotation pipeline.

    Published in:
    Nucleic Acids Research, 2016, v. 44, n. 14, p. 6614, doi. 10.1093/nar/gkw569
    By:
    • Tatusova, Tatiana;
    • DiCuccio, Michael;
    • Badretdin, Azat;
    • Chetvernin, Vyacheslav;
    • Nawrocki, Eric P.;
    • Zaslavsky, Leonid;
    • Lomsadze, Alexandre;
    • Pruitt, Kim D.;
    • Borodovsky, Mark;
    • Ostell, James
    Publication type:
    Article

  • Assembly: a resource for assembled genomes at NCBI.

    Published in:
    Nucleic Acids Research, 2016, v. 44, n. 1, p. D73, doi. 10.1093/nar/gkv1226
    By:
    • Kitts, Paul A.;
    • Church, Deanna M.;
    • Thibaud-Nissen, Françoise;
    • Jinna Choi;
    • Vichet Hem;
    • Sapojnikov, Victor;
    • Smith, Robert G.;
    • Tatusova, Tatiana;
    • Xiang, Charlie;
    • Zherikov, Andrey;
    • DiCuccio, Michael;
    • Murphy, Terence D.;
    • Pruitt, Kim D.;
    • Kimchi, Avi
    Publication type:
    Article

  • RefSeq curation and annotation of antizyme and antizyme inhibitor genes in vertebrates.

    Published in:
    Nucleic Acids Research, 2015, v. 43, n. 15, p. 7270, doi. 10.1093/nar/gkv713
    By:
    • Rajput, Bhanu;
    • Murphy, Terence D.;
    • Pruitt, Kim D.
    Publication type:
    Article

  • Key challenges for the creation and maintenance of specialist protein resources.

    Published in:
    2015
    By:
    • Holliday, Gemma L.;
    • Bairoch, Amos;
    • Bagos, Pantelis G.;
    • Chatonnet, Arnaud;
    • Craik, David J.;
    • Finn, Robert D.;
    • Henrissat, Bernard;
    • Landsman, David;
    • Manning, Gerard;
    • Nagano, Nozomi;
    • O'Donovan, Claire;
    • Pruitt, Kim D.;
    • Rawlings, Neil D.;
    • Saier, Milton;
    • Sowdhamini, Ramanathan;
    • Spedding, Michael;
    • Srinivasan, Narayanaswamy;
    • Vriend, Gert;
    • Babbitt, Patricia C.;
    • Bateman, Alex
    Publication type:
    Editorial

  • Gene: a gene-centered information resource at NCBI.

    Published in:
    Nucleic Acids Research, 2015, v. 43, n. D1, p. D36, doi. 10.1093/nar/gku1055
    By:
    • Brown, Garth R.;
    • Hem, Vichet;
    • Katz, Kenneth S.;
    • Ovetsky, Michael;
    • Wallin, Craig;
    • Ermolaeva, Olga;
    • Tolstoy, Igor;
    • Tatusova, Tatiana;
    • Pruitt, Kim D.;
    • Maglott, Donna R.;
    • Murphy, Terence D.
    Publication type:
    Article

  • HIV-1, human interaction database: current status and new features.

    Published in:
    Nucleic Acids Research, 2015, v. 43, n. D1, p. D566, doi. 10.1093/nar/gku1126
    By:
    • Ako-Adjei, Danso;
    • Fu, William;
    • Wallin, Craig;
    • Katz, Kenneth S.;
    • Song, Guangfeng;
    • Darji, Dakshesh;
    • Brister, J. Rodney;
    • Ptak, Roger G.;
    • Pruitt, Kim D.
    Publication type:
    Article

  • RefSeq: an update on mammalian reference sequences.

    Published in:
    Nucleic Acids Research, 2014, v. 42, n. D1, p. D756, doi. 10.1093/nar/gkt1114
    By:
    • Pruitt, Kim D.;
    • Brown, Garth R.;
    • Hiatt, Susan M.;
    • Thibaud-Nissen, Françoise;
    • Astashyn, Alexander;
    • Ermolaeva, Olga;
    • Farrell, Catherine M.;
    • Hart, Jennifer;
    • Landrum, Melissa J.;
    • McGarvey, Kelly M.;
    • Murphy, Michael R.;
    • O’Leary, Nuala A.;
    • Pujar, Shashikant;
    • Rajput, Bhanu;
    • Rangwala, Sanjida H.;
    • Riddick, Lillian D.;
    • Shkeda, Andrei;
    • Sun, Hanzhen;
    • Tamez, Pamela;
    • Tully, Raymond E.
    Publication type:
    Article

  • Comparison of RefSeq protein-coding regions in human and vertebrate genomes.

    Published in:
    BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-654
    By:
    • Fong, Jessica H.;
    • Murphy, Terence D.;
    • Pruitt, Kim D.
    Publication type:
    Article

  • BioProject and BioSample databases at NCBI: facilitating capture and organization of metadata.

    Published in:
    Nucleic Acids Research, 2012, p. D57, doi. 10.1093/nar/gkr1163
    By:
    • Barrett, Tanya;
    • Clark, Karen;
    • Gevorgyan, Robert;
    • Gorelenkov, Vyacheslav;
    • Gribov, Eugene;
    • Karsch-Mizrachi, Ilene;
    • Kimelman, Michael;
    • Pruitt, Kim D.;
    • Resenchuk, Sergei;
    • Tatusova, Tatiana;
    • Yaschenko, Eugene;
    • Ostell, James
    Publication type:
    Article

  • NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy.

    Published in:
    Nucleic Acids Research, 2012, p. D130, doi. 10.1093/nar/gkr1079
    By:
    • Pruitt, Kim D.;
    • Tatusova, Tatiana;
    • Brown, Garth R.;
    • Maglott, Donna R.
    Publication type:
    Article

  • Recent advances in biocuration: Meeting Report from the fifth International Biocuration Conference.

    Published in:
    2012
    By:
    • Gaudet, Pascale;
    • Arighi, Cecilia;
    • Bastian, Frederic;
    • Bateman, Alex;
    • Blake, Judith A.;
    • Cherry, Michael J.;
    • D’Eustachio, Peter;
    • Finn, Robert;
    • Giglio, Michelle;
    • Hirschman, Lynette;
    • Kania, Renate;
    • Klimke, William;
    • Martin, Maria Jesus;
    • Karsch-Mizrachi, Ilene;
    • Munoz-Torres, Monica;
    • Natale, Darren;
    • O’Donovan, Claire;
    • Ouellette, Francis;
    • Pruitt, Kim D.;
    • Robinson-Rechavi, Marc
    Publication type:
    Proceeding

  • Tracking and coordinating an international curation effort for the CCDS Project.

    Published in:
    Database: The Journal of Biological Databases & Curation, 2012, v. 2012, p. 1, doi. 10.1093/database/bas008
    By:
    • Harte, Rachel A.;
    • Farrell, Catherine M.;
    • Loveland, Jane E.;
    • Suner, Marie-Marthe;
    • Wilming, Laurens;
    • Aken, Bronwen;
    • Barrell, Daniel;
    • Frankish, Adam;
    • Wallin, Craig;
    • Searle, Steve;
    • Diekhans, Mark;
    • Harrow, Jennifer;
    • Pruitt, Kim D.
    Publication type:
    Article

  • Entrez Gene: gene-centered information at NCBI.

    Published in:
    Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D52, doi. 10.1093/nar/gkq1237
    By:
    • Maglott, Donna;
    • Ostell, Jim;
    • Pruitt, Kim D.;
    • Tatusova, Tatiana
    Publication type:
    Article

  • NCBI Reference Sequences: current status, policy and new initiatives.

    Published in:
    Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D32, doi. 10.1093/nar/gkn721
    By:
    • Pruitt, Kim D.;
    • Tatusova, Tatiana;
    • Klimke, William;
    • Maglott, Donna R.
    Publication type:
    Article

  • Human immunodeficiency virus type 1, human protein interaction database at NCBI.

    Published in:
    Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D417
    By:
    • Fu, William;
    • Sanders-Beer, Brigitte E.;
    • Katz, Kenneth S.;
    • Maglott, Donna R.;
    • Pruitt, Kim D.;
    • Ptak, Roger G.
    Publication type:
    Article

  • What everybody should know about the rat genome and its online resources.

    Published in:
    Nature Genetics, 2008, v. 40, n. 5, p. 523, doi. 10.1038/ng0508-523
    By:
    • Twigger, Simon N.;
    • Pruitt, Kim D.;
    • Fernández-Suárez, Xosé M.;
    • Karolchik, Donna;
    • Worley, Kim C.;
    • Maglott, Donna R.;
    • Brown, Garth;
    • Weinstock, George;
    • Gibbs, Richard A.;
    • Kent, Jim;
    • Birney, Ewan;
    • Jacob, Howard J.
    Publication type:
    Article

  • Database resources of the National Center for Biotechnology Information.

    Published in:
    Nucleic Acids Research, 2007, v. 35, p. d5, doi. 10.1093/nar/gkl1031
    By:
    • Wheeler, David L.;
    • Barrett, Tanya;
    • Benson, Dennis A.;
    • Bryant, Stephen H.;
    • Canese, Kathi;
    • Chetvernin, Vyacheslav;
    • Church, Deanna M.;
    • DiCuccio, Michael;
    • Edgar, Ron;
    • Federhen, Scott;
    • Geer, Lewis Y.;
    • Kapustin, Yuri;
    • Khovayko, Oleg;
    • Landsman, David;
    • Lipman, David J.;
    • Madden, Thomas L.;
    • Maglott, Donna R.;
    • Ostell, James;
    • Miller, Vadim;
    • Pruitt, Kim D.
    Publication type:
    Article

  • Entrez Gene: gene-centered information at NCBI.

    Published in:
    Nucleic Acids Research, 2007, v. 35, p. d26, doi. 10.1093/nar/gkl993
    By:
    • Maglott, Donna;
    • Ostell, Jim;
    • Pruitt, Kim D.;
    • Tatusova, Tatiana
    Publication type:
    Article

  • NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins.

    Published in:
    Nucleic Acids Research, 2007, v. 35, p. d61, doi. 10.1093/nar/gkl842
    By:
    • Pruitt, Kim D.;
    • Tatusova, Tatiana;
    • Maglott, Donna R.
    Publication type:
    Article

  • Database resources of the National Center for Biotechnology Information.

    Published in:
    Nucleic Acids Research, 2006, v. 34, n. suppl 1, p. d173, doi. 10.1093/nar/gkj158
    By:
    • Wheeler, David L.;
    • Barrett, Tanya;
    • Benson, Dennis A.;
    • Bryant, Stephen H.;
    • Canese, Kathi;
    • Chetvernin, Vyacheslav;
    • Church, Deanna M.;
    • DiCuccio, Michael;
    • Edgar, Ron;
    • Federhen, Scott;
    • Geer, Lewis Y.;
    • Helmberg, Wolfgang;
    • Kapustin, Yuri;
    • Kenton, David L.;
    • Khovayko, Oleg;
    • Lipman, David J.;
    • Madden, Thomas L.;
    • Maglott, Donna R.;
    • Ostell, James;
    • Pruitt, Kim D.
    Publication type:
    Article

  • Database resources of the National Center for Biotechnology Information.

    Published in:
    Nucleic Acids Research, 2005, v. 33, n. suppl 1, p. d39
    By:
    • Wheeler, David L.;
    • Barrett, Tanya;
    • Benson, Dennis A.;
    • Bryant, Stephen H.;
    • Canese, Kathi;
    • Church, Deanna M.;
    • DiCuccio, Michael;
    • Edgar, Ron;
    • Federhen, Scott;
    • Helmberg, Wolfgang;
    • Kenton, David L.;
    • Khovayko, Oleg;
    • Lipman, David J.;
    • Madden, Thomas L.;
    • Maglott, Donna R.;
    • Ostell, James;
    • Pontius, Joan U.;
    • Pruitt, Kim D.;
    • Schuler, Gregory D.;
    • Schriml, Lynn M.
    Publication type:
    Article

  • Entrez Gene: gene-centered information at NCBI.

    Published in:
    Nucleic Acids Research, 2005, v. 33, n. suppl 1, p. d54
    By:
    • Maglott, Donna;
    • Ostell, Jim;
    • Pruitt, Kim D.;
    • Tatusova, Tatiana
    Publication type:
    Article

  • NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins.

    Published in:
    Nucleic Acids Research, 2005, v. 33, n. suppl 1, p. d501
    By:
    • Pruitt, Kim D.;
    • Tatusova, Tatiana;
    • Maglott, Donna R.
    Publication type:
    Article

  • NCBI Reference Sequence Project: update and current status.

    Published in:
    Nucleic Acids Research, 2003, v. 31, n. 1, p. 34, doi. 10.1093/nar/gkg111
    By:
    • Pruitt, Kim D.;
    • Tatusova, Tatiana;
    • Maglott, Donna R.
    Publication type:
    Article

  • RefSeq and LocusLink: NCBI gene-centered resources.

    Published in:
    Nucleic Acids Research, 2001, v. 29, n. 1, p. 137, doi. 10.1093/nar/29.1.137
    By:
    • Pruitt, Kim D.;
    • Maglott, Donna R.
    Publication type:
    Article

  • NCBI’s LocusLink and RefSeq.

    Published in:
    Nucleic Acids Research, 2000, v. 28, n. 1, p. 126, doi. 10.1093/nar/28.1.126
    By:
    • Maglott, Donna R.;
    • Katz, Kenneth S.;
    • Sicotte, Hugues;
    • Pruitt, Kim D.
    Publication type:
    Article

  • Data management and analysis for gene expression arrays.

    Published in:
    Nature Genetics, 1998, v. 20, n. 1, p. 19, doi. 10.1038/1670
    By:
    • Ermolaeva, Olga;
    • Rastogi, Mohit;
    • Pruitt, Kim D.;
    • Schuler, Gregory D.;
    • Bittner, Michael L.;
    • Chen, Yidong;
    • Simon, Richard;
    • Meltzer, Paul;
    • Trent, Jeffrey M.;
    • Boguski, Mark S.
    Publication type:
    Article