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Stable isotope informed genome-resolved metagenomics reveals that Saccharibacteria utilize microbially-processed plant-derived carbon.
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- Microbiome, 2018, v. 6, n. 1, p. N.PAG, doi. 10.1186/s40168-018-0499-z
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Insights into the ecology, evolution, and metabolism of the widespread Woesearchaeotal lineages.
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- Microbiome, 2018, v. 6, n. 1, p. 1, doi. 10.1186/s40168-018-0488-2
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- Article
Quo vadis? Microbial profiling revealed strong effects of cleanroom maintenance and routes of contamination in indoor environments.
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- Scientific Reports, 2015, p. 9156, doi. 10.1038/srep09156
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- Article
Marine viruses disperse bidirectionally along the natural water cycle.
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- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-42125-5
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Anaerobic degradation of 1-methylnaphthalene by a member of the Thermoanaerobacteraceae contained in an iron-reducing enrichment culture.
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- Biodegradation, 2018, v. 29, n. 1, p. 23, doi. 10.1007/s10532-017-9811-z
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- Article
Culture Independent Genomic Comparisons Reveal Environmental Adaptations for Altiarchaeales.
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- Frontiers in Microbiology, 2016, p. 1, doi. 10.3389/fmicb.2016.01221
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Grappling archaea: ultrastructural analyses of an uncultivated, cold-loving archaeon, and its biofilm.
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- Frontiers in Microbiology, 2014, v. 5, p. 1, doi. 10.3389/fmicb.2014.00397
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Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system.
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- Nature Communications, 2016, v. 7, n. 10, p. 13219, doi. 10.1038/ncomms13219
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Major bacterial lineages are essentially devoid of CRISPR-Cas viral defence systems.
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- Nature Communications, 2016, v. 7, n. 2, p. 10613, doi. 10.1038/ncomms10613
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Biology of a widespread uncultivated archaeon that contributes to carbon fixation in the subsurface.
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- Nature Communications, 2014, v. 5, n. 11, p. 5497, doi. 10.1038/ncomms6497
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- Article
Homologous Recombination and Transposon Propagation Shape the Population Structure of an Organism fromthe Deep Subsurface with Minimal Metabolism.
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- Genome Biology & Evolution, 2018, v. 10, n. 4, p. 1115, doi. 10.1093/gbe/evy067
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- Article
Microaerobic conditions caused the overwhelming dominance of Acinetobacter spp. and the marginalization of Rhodococcus spp. in diesel fuel/crude oil mixture-amended enrichment cultures.
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- Archives of Microbiology, 2020, v. 202, n. 2, p. 329, doi. 10.1007/s00203-019-01749-2
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- Article
Environmental activity-based protein profiling for function-driven enzyme discovery from natural communities.
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- Environmental Microbiome, 2024, v. 19, n. 1, p. 1, doi. 10.1186/s40793-024-00577-2
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- Article
The economical lifestyle of CPR bacteria in groundwater allows little preference for environmental drivers.
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- Environmental Microbiome, 2021, v. 16, n. 1, p. 1, doi. 10.1186/s40793-021-00395-w
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- Article
Potential of Variovorax paradoxus isolate BFB1_13 for bioremediation of BTEX contaminated sites.
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- AMB Express, 2021, v. 11, n. 1, p. 1, doi. 10.1186/s13568-021-01289-3
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- Article
Metagenomic and lipid analyses reveal a diel cycle in a hypersaline microbial ecosystem.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2015, v. 9, n. 12, p. 2697, doi. 10.1038/ismej.2015.66
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- Article
An in vitro culture model to study the dynamics of colonic microbiota in Syrian golden hamsters and their susceptibility to infection with Clostridium difficile.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2015, v. 9, n. 2, p. 321, doi. 10.1038/ismej.2014.127
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Tackling the minority: sulfate-reducing bacteria in an archaea-dominated subsurface biofilm.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2013, v. 7, n. 3, p. 635, doi. 10.1038/ismej.2012.133
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- Article
New perspectives on viable microbial communities in low-biomass cleanroom environments.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2013, v. 7, n. 2, p. 312, doi. 10.1038/ismej.2012.114
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- Article
Microbial Community Structure and the Persistence of Cyanobacterial Populations in Salt Crusts of the Hyperarid Atacama Desert from Genome-Resolved Metagenomics.
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- Frontiers in Microbiology, 2017, p. 1, doi. 10.3389/fmicb.2017.01435
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Leave no stone unturned: individually adapted xerotolerant Thaumarchaeota sheltered below the boulders of the Atacama Desert hyperarid core.
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- Microbiome, 2021, v. 9, n. 1, p. 1, doi. 10.1186/s40168-021-01177-9
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Temporal disturbance of a model stream ecosystem by high microbial diversity from treated wastewater.
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- MicrobiologyOpen, 2023, v. 12, n. 2, p. 1, doi. 10.1002/mbo3.1347
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Genome‐resolved metagenomics reveals the effect of nutrient availability on bacterial genomic properties across 44 European freshwater lakes.
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- Environmental Microbiology, 2024, v. 26, n. 6, p. 1, doi. 10.1111/1462-2920.16634
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uBin: A manual refining tool for genomes from metagenomes.
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- Environmental Microbiology, 2023, v. 25, n. 6, p. 1077, doi. 10.1111/1462-2920.16351
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Genome‐inferred spatio‐temporal resolution of an uncultivated Roizmanbacterium reveals its ecological preferences in groundwater.
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- Environmental Microbiology, 2020, v. 22, n. 2, p. 726, doi. 10.1111/1462-2920.14865
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Genomic resolution of a cold subsurface aquifer community provides metabolic insights for novel microbes adapted to high CO<sub>2</sub> concentrations.
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- Environmental Microbiology, 2017, v. 19, n. 2, p. 459, doi. 10.1111/1462-2920.13362
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- Article
Carbon fixation rates in groundwater similar to those in oligotrophic marine systems.
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- Nature Geoscience, 2022, v. 15, n. 7, p. 561, doi. 10.1038/s41561-022-00968-5
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Lytic archaeal viruses infect abundant primary producers in Earth's crust.
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- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-24803-4
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Coupling Genetic and Chemical Microbiome Profiling Reveals Heterogeneity of Archaeome and Bacteriome in Subsurface Biofilms That Are Dominated by the Same Archaeal Species.
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- PLoS ONE, 2014, v. 9, n. 6, p. 1, doi. 10.1371/journal.pone.0099801
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Quantification of Encapsulated Bioburden in Spacecraft Polymer Materials by Cultivation-Dependent and Molecular Methods.
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- PLoS ONE, 2014, v. 9, n. 4, p. 1, doi. 10.1371/journal.pone.0094265
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- Article
Archaea on Human Skin.
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- PLoS ONE, 2013, v. 8, n. 6, p. 1, doi. 10.1371/journal.pone.0065388
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Microbial Hotspots in Lithic Microhabitats Inferred from DNA Fractionation and Metagenomics in the Atacama Desert.
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- Microorganisms, 2021, v. 9, n. 5, p. 1038, doi. 10.3390/microorganisms9051038
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Microbial succession in an inflated lunar/Mars analog habitat during a 30-day human occupation.
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- Microbiome, 2016, v. 4, p. 1, doi. 10.1186/s40168-016-0167-0
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A viability-linked metagenomic analysis of cleanroom environments: eukarya, prokaryotes, and viruses.
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- Microbiome, 2015, v. 3, p. 1, doi. 10.1186/s40168-015-0129-y
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Microbiomes of the dust particles collected from the International Space Station and Spacecraft Assembly Facilities.
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- Microbiome, 2015, v. 3, p. 1, doi. 10.1186/s40168-015-0116-3
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Saccharibacteria as Organic Carbon Sinks in Hydrocarbon-Fueled Communities.
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- Frontiers in Microbiology, 2020, v. 11, p. N.PAG, doi. 10.3389/fmicb.2020.587782
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Genetic diversity in terrestrial subsurface ecosystems impacted by geological degassing.
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- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-021-27783-7
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- Article
MuDoGeR: Multi‐Domain Genome recovery from metagenomes made easy.
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- Molecular Ecology Resources, 2024, v. 24, n. 2, p. 1, doi. 10.1111/1755-0998.13904
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Agl24 is an ancient archaeal homolog of the eukaryotic N-glycan chitobiose synthesis enzymes.
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- eLife, 2022, p. 1, doi. 10.7554/eLife.67448
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- Article
Overlooked Diversity of Ultramicrobacterial Minorities at the Air-Sea Interface.
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- Atmosphere, 2020, v. 11, n. 11, p. 1214, doi. 10.3390/atmos11111214
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Autotrophic biofilms sustained by deeply sourced groundwater host diverse bacteria implicated in sulfur and hydrogen metabolism.
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- Microbiome, 2024, v. 12, n. 1, p. 1, doi. 10.1186/s40168-023-01704-w
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- Article
"Altiarchaeales": Uncultivated Archaea from the Subsurface.
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- Life (2075-1729), 2015, v. 5, n. 2, p. 1381, doi. 10.3390/life5021381
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Selective enrichment, identification, and isolation of diclofenac, ibuprofen, and carbamazepine degrading bacteria from a groundwater biofilm.
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- Environmental Science & Pollution Research, 2023, v. 30, n. 15, p. 44518, doi. 10.1007/s11356-022-24975-6
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- Article
Effects of a long‐term anoxic warming scenario on microbial community structure and functional potential of permafrost‐affected soil.
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- Permafrost & Periglacial Processes, 2021, v. 32, n. 4, p. 641, doi. 10.1002/ppp.2131
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Virus-Host Dynamics in Archaeal Groundwater Biofilms and the Associated Bacterial Community Composition.
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- Viruses (1999-4915), 2023, v. 15, n. 4, p. 910, doi. 10.3390/v15040910
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- Article
Fungal and Bacterial Communities in Indoor Dust Follow Different Environmental Determinants.
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- PLoS ONE, 2016, v. 11, n. 4, p. 1, doi. 10.1371/journal.pone.0154131
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Cleanroom Maintenance Significantly Reduces Abundance but Not Diversity of Indoor Microbiomes.
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- PLoS ONE, 2015, v. 10, n. 8, p. 1, doi. 10.1371/journal.pone.0134848
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- Article
New Perspectives on Microbial Community Distortion after Whole-Genome Amplification.
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- PLoS ONE, 2015, v. 10, n. 5, p. 1, doi. 10.1371/journal.pone.0124158
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- Article
Urban Dust Microbiome: Impact on Later Atopy and Wheezing.
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- Environmental Health Perspectives, 2016, v. 124, n. 12, p. 1919, doi. 10.1289/EHP158
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- Article
Dancing the Nanopore limbo – Nanopore metagenomics from small DNA quantities for bacterial genome reconstruction.
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- BMC Genomics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12864-023-09853-w
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- Article