Works matching AU Posada, David

Results: 118

Phylovar: toward scalable phylogeny-aware inference of single-nucleotide variations from single-cell DNA sequencing data.

Published in:

Bioinformatics, 2022, v. 38, p. i195, doi. 10.1093/bioinformatics/btac254

By:

Edrisi, Mohammadamin;
Valecha, Monica V;
Chowdary, Sunkara B V;
Robledo, Sergio;
Ogilvie, Huw A;
Posada, David;
Zafar, Hamim;
Nakhleh, Luay

Publication type:

Article

NGSphy: phylogenomic simulation of next-generation sequencing data.

Published in:

Bioinformatics, 2018, v. 34, n. 14, p. 2506, doi. 10.1093/bioinformatics/bty146

By:

Escalona, Merly;
Rocha, Sara;
Posada, David

Publication type:

Article

jmodeltest.org: selection of nucleotide substitution models on the cloud.

Published in:

Bioinformatics, 2014, v. 30, n. 9, p. 1310, doi. 10.1093/bioinformatics/btu032

By:

Santorum, Jose Manuel;
Darriba, Diego;
Taboada, Guillermo L.;
Posada, David

Publication type:

Article

Protein evolution along phylogenetic histories under structurally constrained substitution models.

Published in:

Bioinformatics, 2013, v. 29, n. 23, p. 3020, doi. 10.1093/bioinformatics/btt530

By:

Arenas, Miguel;
Dos Santos, Helena G.;
Posada, David;
Bastolla, Ugo

Publication type:

Article

ProtTest 3: fast selection of best-fit models of protein evolution.

Published in:

Bioinformatics, 2011, v. 27, n. 8, p. 1164, doi. 10.1093/bioinformatics/btr088

By:

Darriba, Diego;
Taboada, Guillermo L.;
Doallo, Ramón;
Posada, David

Publication type:

Article

RDP3: a flexible and fast computer program for analyzing recombination.

Published in:

Bioinformatics, 2010, v. 26, n. 19, p. 2462, doi. 10.1093/bioinformatics/btq467

By:

Martin, Darren P.;
Lemey, Philippe;
Lott, Martin;
Moulton, Vincent;
Posada, David;
Lefeuvre, Pierre

Publication type:

Article

SARS-CoV-2 Evolution and Spike-Specific CD4+ T-Cell Response in Persistent COVID-19 with Severe HIV Immune Suppression.

Published in:

2022

By:

Álvarez, Hortensia;
Ruiz-Mateos, Ezequiel;
Juiz-González, Pedro Miguel;
Vitallé, Joana;
Viéitez, Irene;
Vázquez-Friol, María del Carmen;
Torres-Beceiro, Isabel;
Pérez-Gómez, Alberto;
Gallego-García, Pilar;
Estévez-Gómez, Nuria;
De Chiara, Loretta;
Poveda, Eva;
Posada, David;
Llibre, Josep M.

Publication type:

Case Study

Perkinsoide chabelardi n. gen., a protozoan parasite with an intermediate evolutionary position: possible cause of the decrease of sardine fisheries?

Published in:

Environmental Microbiology, 2006, v. 8, n. 6, p. 1105, doi. 10.1111/j.1462-2920.2006.01008.x

By:

Gestal, Camino;
Novoa, Beatriz;
Posada, David;
Figueras, Antonio;
Azevedo, Carlos

Publication type:

Article

ALTER: program-oriented conversion of DNA and protein alignments.

Published in:

Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W14, doi. 10.1093/nar/gkq321

By:

Glez-Peña, Daniel;
Gómez-Blanco, Daniel;
Reboiro-Jato, Miguel;
Fdez-Riverola, Florentino;
Posada, David

Publication type:

Article

GenDecoder: genetic code prediction for metazoan mitochondria.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 11, p. w389, doi. 10.1093/nar/gkl044

By:

Abascal, Federico;
Zardoya, Rafael;
Posada, David

Publication type:

Article

ModelTest Server: a web-based tool for the statistical selection of models of nucleotide substitution online.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 11, p. w700, doi. 10.1093/nar/gkl042

By:

Posada, David

Publication type:

Article

Crykey: Rapid identification of SARS-CoV-2 cryptic mutations in wastewater.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-48334-w

By:

Liu, Yunxi;
Sapoval, Nicolae;
Gallego-García, Pilar;
Tomás, Laura;
Posada, David;
Treangen, Todd J.;
Stadler, Lauren B.

Publication type:

Article

Phylogenomic Analyses of 2,786 Genes in 158 Lineages Support a Root of the Eukaryotic Tree of Life between Opisthokonts and All Other Lineages.

Published in:

Genome Biology & Evolution, 2022, v. 14, n. 8, p. 1, doi. 10.1093/gbe/evac119

By:

Cerón-Romero, Mario A;
Fonseca, Miguel M;
Martins, Leonardo de Oliveira;
Posada, David;
Katz, Laura A

Publication type:

Article

Genome-Wide Heterogeneity of Nucleotide Substitution Model Fit.

Published in:

Genome Biology & Evolution, 2011, v. 3, p. 896, doi. 10.1093/gbe/evr080

By:

Arbiza, Leonardo;
Patricio, Mateus;
Dopazo, Hernán;
Posada, David

Publication type:

Article

Evolutionary history of Trachylepis skinks in the Seychelles islands: introgressive hybridization, morphological evolution and geographic structure.

Published in:

Biological Journal of the Linnean Society, 2016, v. 119, n. 1, p. 15, doi. 10.1111/bij.12803

By:

Rocha, Sara;
Perera, Anna;
Silva, Andreia;
Posada, David;
Harris, D. James

Publication type:

Article

SIEVE: joint inference of single-nucleotide variants and cell phylogeny from single-cell DNA sequencing data.

Published in:

Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02813-9

By:

Kang, Senbai;
Borgsmüller, Nico;
Valecha, Monica;
Kuipers, Jack;
Alves, Joao M.;
Prado-López, Sonia;
Chantada, Débora;
Beerenwinkel, Niko;
Posada, David;
Szczurek, Ewa

Publication type:

Article

SIEVE: joint inference of single-nucleotide variants and cell phylogeny from single-cell DNA sequencing data.

Published in:

Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02813-9

By:

Kang, Senbai;
Borgsmüller, Nico;
Valecha, Monica;
Kuipers, Jack;
Alves, Joao M.;
Prado-López, Sonia;
Chantada, Débora;
Beerenwinkel, Niko;
Posada, David;
Szczurek, Ewa

Publication type:

Article

CellPhy: accurate and fast probabilistic inference of single-cell phylogenies from scDNA-seq data.

Published in:

Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-021-02583-w

By:

Kozlov, Alexey;
Alves, Joao M.;
Stamatakis, Alexandros;
Posada, David

Publication type:

Article

Sensitivity to sequencing depth in single-cell cancer genomics.

Published in:

Genome Medicine, 2018, v. 10, n. 1, p. N.PAG, doi. 10.1186/s13073-018-0537-2

By:

Alves, João M.;
Posada, David

Publication type:

Article

Phylogenomics suggests oxygen availability as a driving force in Thaumarchaeota evolution.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2019, v. 13, n. 9, p. 2150, doi. 10.1038/s41396-019-0418-8

By:

Ren, Minglei;
Feng, Xiaoyuan;
Huang, Yongjie;
Wang, Hui;
Hu, Zhong;
Clingenpeel, Scott;
Swan, Brandon K.;
Fonseca, Miguel M.;
Posada, David;
Stepanauskas, Ramunas;
Hollibaugh, James T.;
Foster, Peter G.;
Woyke, Tanja;
Luo, Haiwei

Publication type:

Article

Characterization of phylogenetic networks withNetTest.

Published in:

BMC Bioinformatics, 2010, v. 11, p. 268, doi. 10.1186/1471-2105-11-268

By:

Arenas, Miguel;
Patricio, Mateus;
Posada, David;
Valiente, Gabriel

Publication type:

Article

Recodon: Coalescent simulation of coding DNA sequences withrecombination, migration and demography.

Published in:

BMC Bioinformatics, 2007, v. 8, p. 458, doi. 10.1186/1471-2105-8-458

By:

Arenas, Miguel;
Posada, David

Publication type:

Article

Characterization of Reticulate Networks Based on the Coalescent with Recombination.

Published in:

Molecular Biology & Evolution, 2008, v. 25, n. 12, p. 2517, doi. 10.1093/molbev/msn219

By:

Arenas, Miguel;
Valiente, Gabriel;
Posada, David

Publication type:

Article

jModelTest: Phylogenetic Model Averaging.

Published in:

Molecular Biology & Evolution, 2008, v. 25, n. 7, p. 1253, doi. 10.1093/molbev/msn083

By:

Posada, David

Publication type:

Article

Inverted Replication of Vertebrate Mitochondria.

Published in:

Molecular Biology & Evolution, 2008, v. 25, n. 5, p. 805, doi. 10.1093/molbev/msn050

By:

Fonseca, Miguel M.;
Posada, David;
Harris, D. James

Publication type:

Article

MtArt: A New Model of Amino Acid Replacement for Arthropoda.

Published in:

Molecular Biology & Evolution, 2007, v. 24, n. 1, p. 1

By:

Abascal, Federico;
Posada, David;
Zardoya, Rafael

Publication type:

Article

Automated Phylogenetic Detection of Recombination Using a Genetic Algorithm.

Published in:

Molecular Biology & Evolution, 2006, v. 23, n. 10, p. 1891, doi. 10.1093/molbev/msl051

By:

Kosakovsky Pond, Sergei L.;
Posada, David;
Gravenor, Michael B.;
Woelk, Christopher H.;
Frost, Simon D. W.

Publication type:

Article

Recombination Estimation Under Complex Evolutionary Models with the Coalescent Composite-Likelihood Method.

Published in:

Molecular Biology & Evolution, 2006, v. 23, n. 4, p. 817, doi. 10.1093/molbev/msj102

By:

Carvajal-Rodríguez, Antonio;
Crandall, Keith A.;
Posada, David

Publication type:

Article

Evaluation of Methods for Detecting Recombination from DNA Sequences: Empirical Data.

Published in:

Molecular Biology & Evolution, 2002, v. 19, n. 5, p. 708, doi. 10.1093/oxfordjournals.molbev.a004129

By:

Posada, David

Publication type:

Article

Unveiling the Molecular Clock in the Presence of Recombination.

Published in:

Molecular Biology & Evolution, 2001, v. 18, n. 10, p. 1976, doi. 10.1093/oxfordjournals.molbev.a003738

By:

Posada, David

Publication type:

Article

Selecting Models of Nucleotide Substitution: An Application to Human Immunodeficiency Virus 1 (HIV-1).

Published in:

Molecular Biology & Evolution, 2001, v. 18, n. 6, p. 897, doi. 10.1093/oxfordjournals.molbev.a003890

By:

Posada, David;
Crandall, Keith A.

Publication type:

Article

Simple (Wrong) Models for Complex Trees: A Case from Retroviridae.

Published in:

Molecular Biology & Evolution, 2001, v. 18, n. 2, p. 271, doi. 10.1093/oxfordjournals.molbev.a003802

By:

Posada, David;
Crandall, Keith A.

Publication type:

Article

Population Genetics of the porB Gene of Neisseria gonorrhoeae: Different Dynamics in Different Homology Groups.

Published in:

Molecular Biology & Evolution, 2000, v. 17, n. 3, p. 423, doi. 10.1093/oxfordjournals.molbev.a026322

By:

Posada, David;
Crandall, Keith A.;
Nguyen, Man;
Demma, James C.;
Viscidi, Raphael P.

Publication type:

Article

GARD: a genetic algorithm for recombination detection.

Published in:

Bioinformatics, 2006, v. 22, n. 24, p. 3096, doi. 10.1093/bioinformatics/btl474

By:

Kosakovsky Pond, Sergei L.;
Posada, David;
Gravenor, Michael B.;
Woelk, Christopher H.;
Frost, Simon D.W.

Publication type:

Article

TreeScan: a bioinformatic application to search for genotype/phenotype associations using haplotype trees.

Published in:

Bioinformatics, 2005, v. 21, n. 9, p. 2130, doi. 10.1093/bioinformatics/bti293

By:

David Posada;
Taylor J. Maxwell;
Alan R. Templeton

Publication type:

Article

ProtTest: selection of best-fit models of protein evolution.

Published in:

Bioinformatics, 2005, v. 21, n. 9, p. 2104, doi. 10.1093/bioinformatics/bti263

By:

Federico Abascal;
Rafael Zardoya;
David Posada

Publication type:

Article

Simulating haplotype blocks in the human genome.

Published in:

Bioinformatics, 2003, v. 19, n. 2, p. 289, doi. 10.1093/bioinformatics/19.2.289

By:

Posada, David;
Wiuf, Carsten

Publication type:

Article

Low-mitochondrial diversity and lack of structure in the velvet swimming crab Necora puber along the Galician coast.

Published in:

Marine Biology, 2009, v. 156, n. 5, p. 1039, doi. 10.1007/s00227-009-1148-7

By:

Sotelo, Graciela;
Posada, David;
Morán, Paloma

Publication type:

Article

Desarrollo de un algoritmo para determinar el riesgo de muerte en pacientes dentro de una Unidad de Cuidado Intensivo utilizando Regresión Múltiple no Lineal.

Published in:

Prospectiva (1692-8261), 2014, v. 12, n. 2, p. 49, doi. 10.15665/rp.v12i2.288

By:

García García, Cindy María;
Posada Aguilar, José David;
Padilla, Jair Villanueva

Publication type:

Article

Control de un brazo robótico usando el hardware kinect® de microsoft.

Published in:

Prospectiva (1692-8261), 2013, v. 11, n. 2, p. 88

By:

Posada Aguilar, José David;
Padilla, Jair Villanueva;
Castillo Perez, Moises David;
de Jesus Molina Gonzalez, Steven

Publication type:

Article

Selective Pressures on Human Cancer Genes along the Evolution of Mammals.

Published in:

Genes, 2018, v. 9, n. 12, p. 582, doi. 10.3390/genes9120582

By:

Vicens, Alberto;
Posada, David

Publication type:

Article

Analysing recombination in nucleotide sequences.

Published in:

Molecular Ecology Resources, 2011, v. 11, n. 6, p. 943, doi. 10.1111/j.1755-0998.2011.03026.x

By:

MARTIN, DARREN P.;
LEMEY, PHILIPPE;
POSADA, DAVID

Publication type:

Article

Removal versus fragmentation of amyloid-forming precursors via membrane filtration.

Published in:

Biotechnology & Bioengineering, 2012, v. 109, n. 3, p. 840, doi. 10.1002/bit.24341

By:

Posada, David;
Tessier, Peter M.;
Hirsa, Amir H.

Publication type:

Article

Detection and reduction of microaggregates in insulin preparations.

Published in:

Biotechnology & Bioengineering, 2011, v. 108, n. 1, p. 237, doi. 10.1002/bit.22902

By:

Heldt, Caryn L.;
Sorci, Mirco;
Posada, David;
Hirsa, Amir;
Belfort, Georges

Publication type:

Article

THE CAUSES AND CONSEQUENCES OF HIV EVOLUTION.

Published in:

Nature Reviews Genetics, 2004, v. 5, n. 1, p. 52, doi. 10.1038/nrg1246

By:

Rambaut, Andrew;
Posada, David;
Crandall, Keith A.;
Holmes, Edward C.

Publication type:

Article

El Ser del Terapeuta: A narrative examination into family‐of‐origin influence on the professional self of students in family therapy training in Colombia.

Published in:

Journal of Marital & Family Therapy, 2023, v. 49, n. 2, p. 481, doi. 10.1111/jmft.12634

By:

Becerra, Michael Damon;
Botero, Mireya O.;
Velez, Isabel C. Bernal;
Silva, Adriana S. S.;
S. Garcia, Luisa Maria;
Posada, David S. O.

Publication type:

Article

Algoritmo de Encriptación de Imágenes Utilizando el Atractor Caótico de Lorenz.

Published in:

Ingeniería (0121-750X), 2017, v. 22, n. 3, p. 1, doi. 10.14483/23448393.11976

By:

Rodríguez Rodríguez, Iván Felipe;
Amaya Barrera, Edilma Isabel;
Suárez Parra, César Augusto;
Moreno Posada, José David

Publication type:

Article

An Exact Nonparametric Method for Inferring Mosaic Structure in Sequence Triplets.

Published in:

Genetics, 2007, v. 176, n. 2, p. 1035, doi. 10.1534/genetics.106.068874

By:

Boni, Maciej F.;
Posada, David;
Feldman, Marcus W.

Publication type:

Article

Tree Scanning: A Method for Using Haplotype Trees in Phenotype/Genotype Association Studies.

Published in:

Genetics, 2005, v. 169, n. 1, p. 441, doi. 10.1534/genetics.104.030080

By:

Templeton, Alan R.;
Maxwell, Taylor;
Posada, David;
Stengârd, Jari H.;
Boerwinkle, Eric;
Sing, Charles F.

Publication type:

Article

A Coalescent Model of Recombination Hotspots.

Published in:

Genetics, 2003, v. 164, n. 1, p. 407, doi. 10.1093/genetics/164.1.407

By:

Wiuf, Carsten;
Posada, David

Publication type:

Article