Works matching AU Posada, David

Results: 118

jmodeltest.org: selection of nucleotide substitution models on the cloud.

Published in:

Bioinformatics, 2014, v. 30, n. 9, p. 1310, doi. 10.1093/bioinformatics/btu032

By:

Santorum, Jose Manuel;
Darriba, Diego;
Taboada, Guillermo L.;
Posada, David

Publication type:

Article

Protein evolution along phylogenetic histories under structurally constrained substitution models.

Published in:

Bioinformatics, 2013, v. 29, n. 23, p. 3020, doi. 10.1093/bioinformatics/btt530

By:

Arenas, Miguel;
Dos Santos, Helena G.;
Posada, David;
Bastolla, Ugo

Publication type:

Article

ProtTest 3: fast selection of best-fit models of protein evolution.

Published in:

Bioinformatics, 2011, v. 27, n. 8, p. 1164, doi. 10.1093/bioinformatics/btr088

By:

Darriba, Diego;
Taboada, Guillermo L.;
Doallo, Ramón;
Posada, David

Publication type:

Article

RDP3: a flexible and fast computer program for analyzing recombination.

Published in:

Bioinformatics, 2010, v. 26, n. 19, p. 2462, doi. 10.1093/bioinformatics/btq467

By:

Martin, Darren P.;
Lemey, Philippe;
Lott, Martin;
Moulton, Vincent;
Posada, David;
Lefeuvre, Pierre

Publication type:

Article

GARD: a genetic algorithm for recombination detection.

Published in:

Bioinformatics, 2006, v. 22, n. 24, p. 3096, doi. 10.1093/bioinformatics/btl474

By:

Kosakovsky Pond, Sergei L.;
Posada, David;
Gravenor, Michael B.;
Woelk, Christopher H.;
Frost, Simon D.W.

Publication type:

Article

Selective Pressures on Human Cancer Genes along the Evolution of Mammals.

Published in:

Genes, 2018, v. 9, n. 12, p. 582, doi. 10.3390/genes9120582

By:

Vicens, Alberto;
Posada, David

Publication type:

Article

Massive gene presence-absence variation shapes an open pan-genome in the Mediterranean mussel.

Published in:

Genome Biology, 2020, v. 21, n. 1, p. N.PAG, doi. 10.1186/s13059-020-02180-3

By:

Gerdol, Marco;
Moreira, Rebeca;
Cruz, Fernando;
Gómez-Garrido, Jessica;
Vlasova, Anna;
Rosani, Umberto;
Venier, Paola;
Naranjo-Ortiz, Miguel A.;
Murgarella, Maria;
Greco, Samuele;
Balseiro, Pablo;
Corvelo, André;
Frias, Leonor;
Gut, Marta;
Gabaldón, Toni;
Pallavicini, Alberto;
Canchaya, Carlos;
Novoa, Beatriz;
Alioto, Tyler S.;
Posada, David

Publication type:

Article

TreeScan: a bioinformatic application to search for genotype/phenotype associations using haplotype trees.

Published in:

Bioinformatics, 2005, v. 21, n. 9, p. 2130, doi. 10.1093/bioinformatics/bti293

By:

David Posada;
Taylor J. Maxwell;
Alan R. Templeton

Publication type:

Article

ProtTest: selection of best-fit models of protein evolution.

Published in:

Bioinformatics, 2005, v. 21, n. 9, p. 2104, doi. 10.1093/bioinformatics/bti263

By:

Federico Abascal;
Rafael Zardoya;
David Posada

Publication type:

Article

Simulating haplotype blocks in the human genome.

Published in:

Bioinformatics, 2003, v. 19, n. 2, p. 289, doi. 10.1093/bioinformatics/19.2.289

By:

Posada, David;
Wiuf, Carsten

Publication type:

Article

Nanofiltración en el manejo del lactosuero.

Published in:

Journal of Engineering & Technology (2256-3903), 2016, v. 5, n. 2, p. 10, doi. 10.22507/jet.v5n2a4

By:

Posada David, Liliana Rigey

Publication type:

Article

Mitochondrial genome sequencing of marine leukaemias reveals cancer contagion between clam species in the Seas of Southern Europe.

Published in:

eLife, 2022, p. 1, doi. 10.7554/eLife.66946

By:

Souto, Daniel Garcia;
Bruzos, Alicia L.;
Diaz, Seila;
Rocha, Sara;
Valtierra, Ana Pequeño;
Lewis, Camila F. Roman;
Alonso, Juana;
Rodriguez, Rosana;
Costas, Damian;
Castro, Jorge Rodriguez;
Villanueva, Antonio;
Silva, Luis;
Valencia, Jose Maria;
Annona, Giovanni;
Tarallo, Andrea;
Ricardo, Fernando;
Cetinić, Ana Bratoš;
Posada, David;
Pasantes, Juan Jose;
Tubio, Jose MC

Publication type:

Article

PARAORGASMO, LA METÁFORA DEL CUERPO EN LA DIVERSIDAD FUNCIONAL.

Published in:

Revista de Psicologia GEPU, 2018, v. 9, n. 1, p. 86

By:

Taborda Restrepo, Estefanía;
Torres Posada, Jose David;
Carolina Romero, Diana

Publication type:

Article

SIEVE: joint inference of single-nucleotide variants and cell phylogeny from single-cell DNA sequencing data.

Published in:

Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02813-9

By:

Kang, Senbai;
Borgsmüller, Nico;
Valecha, Monica;
Kuipers, Jack;
Alves, Joao M.;
Prado-López, Sonia;
Chantada, Débora;
Beerenwinkel, Niko;
Posada, David;
Szczurek, Ewa

Publication type:

Article

SIEVE: joint inference of single-nucleotide variants and cell phylogeny from single-cell DNA sequencing data.

Published in:

Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02813-9

By:

Kang, Senbai;
Borgsmüller, Nico;
Valecha, Monica;
Kuipers, Jack;
Alves, Joao M.;
Prado-López, Sonia;
Chantada, Débora;
Beerenwinkel, Niko;
Posada, David;
Szczurek, Ewa

Publication type:

Article

CellPhy: accurate and fast probabilistic inference of single-cell phylogenies from scDNA-seq data.

Published in:

Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-021-02583-w

By:

Kozlov, Alexey;
Alves, Joao M.;
Stamatakis, Alexandros;
Posada, David

Publication type:

Article

The Inversion of the Control Region in Three Mitogenomes Provides Further Evidence for an Asymmetric Model of Vertebrate mtDNA Replication.

Published in:

PLoS ONE, 2014, v. 9, n. 9, p. 1, doi. 10.1371/journal.pone.0106654

By:

Fonseca, Miguel M.;
Harris, D. James;
Posada, David

Publication type:

Article

The Evolution and Appearance of C3 Duplications in Fish Originate an Exclusive Teleost <i>c3</i> Gene Form with Anti-Inflammatory Activity.

Published in:

PLoS ONE, 2014, v. 9, n. 6, p. 1, doi. 10.1371/journal.pone.0099673

By:

Forn-Cuní, Gabriel;
Reis, Edimara S.;
Dios, Sonia;
Posada, David;
Lambris, John D.;
Figueras, Antonio;
Novoa, Beatriz

Publication type:

Article

Base-Pairing Versatility Determines Wobble Sites in tRNA Anticodons of Vertebrate Mitogenomes.

Published in:

PLoS ONE, 2012, v. 7, n. 5, p. 1, doi. 10.1371/journal.pone.0036605

By:

Fonseca, Miguel M.;
Rocha, Sara;
Posada, David

Publication type:

Article

Phylodynamics of HIV-1 from a Phase III AIDS Vaccine Trial in Bangkok, Thailand.

Published in:

PLoS ONE, 2011, v. 6, n. 3, p. 1, doi. 10.1371/journal.pone.0016902

By:

Pérez-Losada, Marcos;
Jobes, David V.;
Sinangil, Faruk;
Crandall, Keith A.;
Arenas, Miguel;
Posada, David;
Berman, Phillip W.

Publication type:

Article

A Comparison of Phylogenetic Network Methods Using Computer Simulation.

Published in:

PLoS ONE, 2008, v. 3, n. 4, p. 1, doi. 10.1371/journal.pone.0001913

By:

Woolley, Steven M.;
Posada, David;
Crandall, Keith A.

Publication type:

Article

Phylogenomics for Systematic Biology.

Published in:

Systematic Biology, 2016, v. 65, n. 3, p. 353, doi. 10.1093/sysbio/syw027

By:

POSADA, DAVID

Publication type:

Article

A Bayesian Supertree Model for Genome-Wide Species Tree Reconstruction.

Published in:

Systematic Biology, 2016, v. 65, n. 3, p. 397, doi. 10.1093/sysbio/syu082

By:

DE OLIVEIRA MARTINS, LEONARDO;
MALLO, DIEGO;
POSADA, DAVID

Publication type:

Article

SimPhy: Phylogenomic Simulation of Gene, Locus, and Species Trees.

Published in:

Systematic Biology, 2016, v. 65, n. 2, p. 334, doi. 10.1093/sysbio/syv082

By:

MALLO, DIEGO;
DE OLIVEIRA MARTINS, LEONARDO;
POSADA, DAVID

Publication type:

Article

Unsorted Homology within Locus and Species Trees.

Published in:

Systematic Biology, 2014, v. 63, n. 6, p. 988, doi. 10.1093/sysbio/syu050

By:

Mallo, Diego;
De Oliveira Martins, Leonardo;
Posada, David

Publication type:

Article

Testing for Universal Common Ancestry.

Published in:

Systematic Biology, 2014, v. 63, n. 5, p. 838, doi. 10.1093/sysbio/syu041

By:

de Oliveira Martins, Leonardo;
Posada, David

Publication type:

Article

Model Selection and Model Averaging in Phylogenetics: Advantages of Akaike Information Criterion and Bayesian Approaches Over Likelihood Ratio Tests.

Published in:

Systematic Biology, 2004, v. 53, n. 5, p. 793, doi. 10.1080/10635150490522304

By:

Posada, David;
Buckley, Thomas

Publication type:

Article

Algoritmo de Encriptación de Imágenes Utilizando el Atractor Caótico de Lorenz.

Published in:

Ingeniería (0121-750X), 2017, v. 22, n. 3, p. 1, doi. 10.14483/23448393.11976

By:

Rodríguez Rodríguez, Iván Felipe;
Amaya Barrera, Edilma Isabel;
Suárez Parra, César Augusto;
Moreno Posada, José David

Publication type:

Article

ALTERNATIVAS PARA EL DESARROLLO SOSTENIBLE DEL TURISMO POSPANDEMIA EN LOS MUNICIPIOS DE APARTADÓ, ARBOLETES Y NECOCLÍ DEL URABÁ ANTIOQUEÑO COLOMBIANO.

Published in:

Anuario Turismo y Sociedad, 2023, v. 33, p. 299, doi. 10.18601/01207555.n33.13

By:

García Giraldo, Paula Catalina;
Rivera Martínez, César Augusto;
Rueda Posada, David Andrés;
Ortiz Cano, Gloria Cristina;
Alzate Díaz, Hernán Antonio;
Velásquez Agudelo, Natalia

Publication type:

Article

Perkinsoide chabelardi n. gen., a protozoan parasite with an intermediate evolutionary position: possible cause of the decrease of sardine fisheries?

Published in:

Environmental Microbiology, 2006, v. 8, n. 6, p. 1105, doi. 10.1111/j.1462-2920.2006.01008.x

By:

Gestal, Camino;
Novoa, Beatriz;
Posada, David;
Figueras, Antonio;
Azevedo, Carlos

Publication type:

Article

Phylogenomics suggests oxygen availability as a driving force in Thaumarchaeota evolution.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2019, v. 13, n. 9, p. 2150, doi. 10.1038/s41396-019-0418-8

By:

Ren, Minglei;
Feng, Xiaoyuan;
Huang, Yongjie;
Wang, Hui;
Hu, Zhong;
Clingenpeel, Scott;
Swan, Brandon K.;
Fonseca, Miguel M.;
Posada, David;
Stepanauskas, Ramunas;
Hollibaugh, James T.;
Foster, Peter G.;
Woyke, Tanja;
Luo, Haiwei

Publication type:

Article

Infinitely long branches and an informal test of common ancestry.

Published in:

Biology Direct, 2016, v. 11, p. 1, doi. 10.1186/s13062-016-0120-y

By:

de Oliveira Martins, Leonardo;
Posada, David

Publication type:

Article

Wastewater early warning system for SARS-CoV-2 outbreaks and variants in a Coruña, Spain.

Published in:

Environmental Science & Pollution Research, 2023, v. 30, n. 32, p. 79315, doi. 10.1007/s11356-023-27877-3

By:

Trigo-Tasende, Noelia;
Vallejo, Juan A.;
Rumbo-Feal, Soraya;
Conde-Pérez, Kelly;
Vaamonde, Manuel;
López-Oriona, Ángel;
Barbeito, Inés;
Nasser-Ali, Mohammed;
Reif, Rubén;
Rodiño-Janeiro, Bruno K.;
Fernández-Álvarez, Elisa;
Iglesias-Corrás, Iago;
Freire, Borja;
Tarrío-Saavedra, Javier;
Tomás, Laura;
Gallego-García, Pilar;
Posada, David;
Bou, Germán;
López-de-Ullibarri, Ignacio;
Cao, Ricardo

Publication type:

Article

Low-mitochondrial diversity and lack of structure in the velvet swimming crab Necora puber along the Galician coast.

Published in:

Marine Biology, 2009, v. 156, n. 5, p. 1039, doi. 10.1007/s00227-009-1148-7

By:

Sotelo, Graciela;
Posada, David;
Morán, Paloma

Publication type:

Article

Joint analysis of species and genetic variation to quantify the role of dispersal and environmental constraints in community turnover.

Published in:

Ecography, 2022, v. 2022, n. 5, p. 1, doi. 10.1111/ecog.05808

By:

Baselga, Andrés;
Gómez‐Rodríguez, Carola;
Araújo, Miguel B.;
Castro‐Insua, Adrián;
Arenas, Miguel;
Posada, David;
Vogler, Alfried P.

Publication type:

Article

The Effect of Recombination on the Reconstruction of Ancestral Sequences.

Published in:

Genetics, 2010, v. 184, n. 4, p. 1133, doi. 10.1534/genetics.109.113423

By:

Arenas, Miguel;
Posada, David

Publication type:

Article

Coalescent Simulation of Intracodon Recombination.

Published in:

Genetics, 2010, v. 184, n. 2, p. 429, doi. 10.1534/genetics.109.109736

By:

Arenas, Miguel;
Posada, David

Publication type:

Article

An Exact Nonparametric Method for Inferring Mosaic Structure in Sequence Triplets.

Published in:

Genetics, 2007, v. 176, n. 2, p. 1035, doi. 10.1534/genetics.106.068874

By:

Boni, Maciej F.;
Posada, David;
Feldman, Marcus W.

Publication type:

Article

Tree Scanning: A Method for Using Haplotype Trees in Phenotype/Genotype Association Studies.

Published in:

Genetics, 2005, v. 169, n. 1, p. 441, doi. 10.1534/genetics.104.030080

By:

Templeton, Alan R.;
Maxwell, Taylor;
Posada, David;
Stengârd, Jari H.;
Boerwinkle, Eric;
Sing, Charles F.

Publication type:

Article

A Coalescent Model of Recombination Hotspots.

Published in:

Genetics, 2003, v. 164, n. 1, p. 407, doi. 10.1093/genetics/164.1.407

By:

Wiuf, Carsten;
Posada, David

Publication type:

Article

Crime and Punishment: How Historical Narratives Affect the Evaluation of Restorative and Retributive Justice.

Published in:

Journal of Human Values, 2023, v. 29, n. 3, p. 261, doi. 10.1177/09716858231154381

By:

Hernandez-Posada, Juan David;
Corredor, Javier;
Martínez-Salgado, Alejandra María

Publication type:

Article

High-performance computing selection of models of DNA substitution for multicore clusters.

Published in:

International Journal of High Performance Computing Applications, 2014, v. 28, n. 1, p. 112, doi. 10.1177/1094342013495095

By:

Darriba, Diego;
Taboada, Guillermo L;
Doallo, Ramón;
Posada, David

Publication type:

Article

THE CAUSES AND CONSEQUENCES OF HIV EVOLUTION.

Published in:

Nature Reviews Genetics, 2004, v. 5, n. 1, p. 52, doi. 10.1038/nrg1246

By:

Rambaut, Andrew;
Posada, David;
Crandall, Keith A.;
Holmes, Edward C.

Publication type:

Article

La paz en Colombia, ¿a cualquier costo?1 .

Published in:

Investigium IRE: Ciencias Sociales y Humanas, 2022, v. 13, n. 1, p. 45, doi. 10.15658/investigiumire.221301.04

By:

Muñoz- Cardona, Ángel Emilio;
Hincapié, David Posada-

Publication type:

Article

OmniSARS2: A Highly Sensitive and Specific RT-qPCR-Based COVID-19 Diagnostic Method Designed to Withstand SARS-CoV-2 Lineage Evolution.

Published in:

Biomedicines, 2021, v. 9, n. 10, p. 1314, doi. 10.3390/biomedicines9101314

By:

Carvalho-Correia, Eduarda;
Calçada, Carla;
Branca, Fernando;
Estévez-Gómez, Nuria;
De Chiara, Loretta;
Varela, Nair;
Gallego-García, Pilar;
Posada, David;
Sousa, Hugo;
Sousa, João;
Veiga, Maria Isabel;
Osório, Nuno S.

Publication type:

Article

RNA-Seq in Mytilus galloprovincialis: comparative transcriptomics and expression profiles among different tissues.

Published in:

BMC Genomics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12864-015-1817-5

By:

Moreira, Rebeca;
Pereiro, Patricia;
Canchaya, Carlos;
Posada, David;
Figueras, Antonio;
Novoa, Beatriz

Publication type:

Article

Malignant transformation and genetic alterations are uncoupled in early colorectal cancer progression.

Published in:

BMC Biology, 2020, v. 18, n. 1, p. N.PAG, doi. 10.1186/s12915-020-00844-x

By:

Mamlouk, Soulafa;
Simon, Tincy;
Tomás, Laura;
Wedge, David C.;
Arnold, Alexander;
Menne, Andrea;
Horst, David;
Capper, David;
Morkel, Markus;
Posada, David;
Sers, Christine;
Bläker, Hendrik

Publication type:

Article

An Evolutionary Model-Based Algorithm for Accurate Phylogenetic Breakpoint Mapping and Subtype Prediction in HIV-1.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 11, p. 1, doi. 10.1371/journal.pcbi.1000581

By:

Pond, Sergei L. Kosakovsky;
Posada, David;
Stawiski, Eric;
Chappey, Colombe;
Poon, Art F. Y.;
Hughes, Gareth;
Fearnhill, Esther;
Gravenor, Mike B.;
Brown, Andrew J. Leigh;
Frost, Simon D. W.

Publication type:

Article

SARS-CoV-2 Evolution and Spike-Specific CD4+ T-Cell Response in Persistent COVID-19 with Severe HIV Immune Suppression.

Published in:

2022

By:

Álvarez, Hortensia;
Ruiz-Mateos, Ezequiel;
Juiz-González, Pedro Miguel;
Vitallé, Joana;
Viéitez, Irene;
Vázquez-Friol, María del Carmen;
Torres-Beceiro, Isabel;
Pérez-Gómez, Alberto;
Gallego-García, Pilar;
Estévez-Gómez, Nuria;
De Chiara, Loretta;
Poveda, Eva;
Posada, David;
Llibre, Josep M.

Publication type:

Case Study

Parentalidad positiva: afecto, control y justicia del trato parental hacia díadas fraternas y su relación con los problemas socio-emocionales de los hijos adolescentes.

Published in:

Revista de Investigación en Educación, 2023, v. 21, n. 1, p. 48, doi. 10.35869/reined.v21i1.4531

By:

Posada, David;
López-Larrosa, Silvia

Publication type:

Article