Works by Poroikov, Vladimir

Results: 69

Metatox - Web application for generation of metabolic pathways and toxicity estimation.

Published in:

Journal of Bioinformatics & Computational Biology, 2019, v. 17, n. 1, p. N.PAG, doi. 10.1142/S0219720019400018

By:

Rudik, Anastasiya;
Bezhentsev, Vladislav;
Dmitriev, Alexander;
Lagunin, Alexey;
Filimonov, Dmitry;
Poroikov, Vladimir

Publication type:

Article

Identification of potential drug targets for treatment of refractory epilepsy using network pharmacology.

Published in:

Journal of Bioinformatics & Computational Biology, 2018, v. 16, n. 1, p. -1, doi. 10.1142/S0219720018400024

By:

Bezhentsev, Vladislav;
Ivanov, Sergey;
Kumar, Sandeep;
Goel, Rajesh;
Poroikov, Vladimir

Publication type:

Article

PASS-based approach to predict HIV-1 reverse transcriptase resistance.

Published in:

Journal of Bioinformatics & Computational Biology, 2017, v. 15, n. 2, p. -1, doi. 10.1142/S0219720016500402

By:

Tarasova, Olga;
Filimonov, Dmitry;
Poroikov, Vladimir

Publication type:

Article

RECOGNITION OF PROTEIN FUNCTION USING THE LOCAL SIMILARITY.

Published in:

Journal of Bioinformatics & Computational Biology, 2008, v. 6, n. 4, p. 709, doi. 10.1142/S021972000800359X

By:

ALEXANDROV, KIRILL;
SOBOLEV, BORIS;
FILIMONOV, DMITRY;
POROIKOV, VLADIMIR

Publication type:

Article

PASS: prediction of activity spectra for biologically active substances.

Published in:

Bioinformatics, 2000, v. 16, n. 8, p. 747, doi. 10.1093/bioinformatics/16.8.747

By:

Lagunin, Alexey;
Stepanchikova, Alla;
Filimonov, Dmitrii;
Poroikov, Vladimir

Publication type:

Article

Preface.

Published in:

SAR & QSAR in Environmental Research, 2001, v. 12, n. 4, p. i, doi. 10.1080/10629360108033241

By:

Zefirov, Nikolay;
Poroikov, Vladimir;
Raevsky, Oleg

Publication type:

Article

CYCLONET—an integrated database on cell cycle regulation and carcinogenesis.

Published in:

Nucleic Acids Research, 2007, v. 35, p. d550, doi. 10.1093/nar/gkl912

By:

Kolpakov, Fedor;
Poroikov, Vladimir;
Sharipov, Ruslan;
Kondrakhin, Yury;
Zakharov, Alexey;
Lagunin, Alexey;
Milanesi, Luciano;
Kel, Alexander

Publication type:

Article

Synthesis and chemoinformatics analysis of N-aryl-β-alanine derivatives.

Published in:

Research on Chemical Intermediates, 2015, v. 41, n. 10, p. 7517, doi. 10.1007/s11164-014-1841-0

By:

Anusevicius, Kazimieras;
Mickevicius, Vytautas;
Stasevych, Maryna;
Zvarych, Victor;
Komarovska-Porokhnyavets, Olena;
Novikov, Volodymyr;
Tarasova, Olga;
Gloriozova, Tatyana;
Poroikov, Vladimir

Publication type:

Article

OpenTox predictive toxicology framework: toxicological ontology and semantic media wiki-based OpenToxipedia.

Published in:

Journal of Biomedical Semantics, 2012, v. 3, n. Suppl 1, p. 1, doi. 10.1186/2041-1480-3-S1-S7

By:

Tcheremenskaia, Olga;
Benigni, Romualdo;
Nikolova, Ivelina;
Jeliazkova, Nina;
Escher, Sylvia E.;
Batke, Monika;
Baier, Thomas;
Poroikov, Vladimir;
Lagunin, Alexey;
Rautenberg, Micha;
Hardy, Barry

Publication type:

Article

Proteomic Analysis Identifies Multiple Mechanisms of 5-Fluorouracil-Induced Gut Mucositis in Mice.

Published in:

Cancers, 2024, v. 16, n. 23, p. 4025, doi. 10.3390/cancers16234025

By:

Ivanov, Sergey M.;
Zgoda, Victor G.;
Isakova, Valeria A.;
Trukhanova, Lyubov S.;
Poroikov, Vladimir V.;
Shtil, Alexander A.

Publication type:

Article

Synthesis, Biological Evaluation and Molecular Docking Studies of 5-Indolylmethylen-4-oxo-2-thioxothiazolidine Derivatives.

Published in:

Molecules, 2022, v. 27, n. 3, p. 1068, doi. 10.3390/molecules27031068

By:

Horishny, Volodymyr;
Geronikaki, Athina;
Kartsev, Victor;
Matiychuk, Vasyl;
Petrou, Anthi;
Pogodin, Pavel;
Poroikov, Vladimir;
Papadopoulou, Theodora A.;
Vizirianakis, Ioannis S.;
Kostic, Marina;
Ivanov, Marija;
Sokovic, Marina

Publication type:

Article

Chromenol Derivatives as Novel Antifungal Agents: Synthesis, In Silico and In Vitro Evaluation.

Published in:

Molecules, 2021, v. 26, n. 14, p. 4304, doi. 10.3390/molecules26144304

By:

Zveaghintseva, Marina;
Stingaci, Eugenia;
Pogrebnoi, Serghei;
Smetanscaia, Anastasia;
Valica, Vladimir;
Uncu, Livia;
Ch. Kravtsov, Victor;
Melnic, Elena;
Petrou, Anthi;
Glamočlija, Jasmina;
Soković, Marina;
Carazo, Alejandro;
Mladěnka, Přemysl;
Poroikov, Vladimir;
Geronikaki, Athina;
Macaev, Fliur Z.

Publication type:

Article

Antiprotozoal and Antitumor Activity of Natural Polycyclic Endoperoxides: Origin, Structures and Biological Activity.

Published in:

Molecules, 2021, v. 26, n. 3, p. 686, doi. 10.3390/molecules26030686

By:

Dembitsky, Valery M.;
Ermolenko, Ekaterina;
Savidov, Nick;
Gloriozova, Tatyana A.;
Poroikov, Vladimir V.;
Osborn, Helen

Publication type:

Article

Data and Text Mining Help Identify Key Proteins Involved in the Molecular Mechanisms Shared by SARS-CoV-2 and HIV-1.

Published in:

Molecules, 2020, v. 25, n. 12, p. 2944, doi. 10.3390/molecules25122944

By:

Tarasova, Olga;
Ivanov, Sergey;
Filimonov, Dmitry A.;
Poroikov, Vladimir;
Geronikaki, Athina;
Maigret, Bernard

Publication type:

Article

(Q)SAR Models of HIV-1 Protein Inhibition by Drug-Like Compounds.

Published in:

Molecules, 2020, v. 25, n. 1, p. 87, doi. 10.3390/molecules25010087

By:

Stolbov, Leonid A.;
Druzhilovskiy, Dmitry S.;
Filimonov, Dmitry A.;
Nicklaus, Marc C.;
Poroikov, Vladimir V.;
Geronikaki, Athina

Publication type:

Article

Prediction of Severity of Drug-Drug Interactions Caused by Enzyme Inhibition and Activation.

Published in:

Molecules, 2019, v. 24, n. 21, p. 3955, doi. 10.3390/molecules24213955

By:

Dmitriev, Alexander;
Filimonov, Dmitry;
Lagunin, Alexey;
Karasev, Dmitry;
Pogodin, Pavel;
Rudik, Anastasiya;
Poroikov, Vladimir;
Geronikaki, Athina

Publication type:

Article

A Computational Approach for the Prediction of HIV Resistance Based on Amino Acid and Nucleotide Descriptors.

Published in:

Molecules, 2018, v. 23, n. 11, p. 2751, doi. 10.3390/molecules23112751

By:

Tarasova, Olga;
Biziukova, Nadezhda;
Filimonov, Dmitry;
Poroikov, Vladimir

Publication type:

Article

Molecular Docking Studies of HIV-1 Resistance to Reverse Transcriptase Inhibitors: Mini-Review.

Published in:

Molecules, 2018, v. 23, n. 5, p. 1233, doi. 10.3390/molecules23051233

By:

Tarasova, Olga;
Poroikov, Vladimir;
Veselovsky, Alexander

Publication type:

Article

HIV Resistance Prediction to Reverse Transcriptase Inhibitors: Focus on Open Data.

Published in:

Molecules, 2018, v. 23, n. 4, p. 956, doi. 10.3390/molecules23040956

By:

Tarasova, Olga;
Poroikov, Vladimir;
Geronikaki, Athina

Publication type:

Article

QNA-Based Prediction of Sites of Metabolism.

Published in:

Molecules, 2017, v. 22, n. 12, p. 2123, doi. 10.3390/molecules22122123

By:

Tarasova, Olga;
Rudik, Anastassia;
Dmitriev, Alexander;
Lagunin, Alexey;
Filimonov, Dmitry;
Poroikov, Vladimir

Publication type:

Article

DIGEP‐Pred 2.0: A web application for predicting drug‐induced cell signaling and gene expression changes.

Published in:

Molecular Informatics, 2024, v. 43, n. 12, p. 1, doi. 10.1002/minf.202400032

By:

Ivanov, Sergey M.;
Rudik, Anastasia V.;
Lagunin, Alexey A.;
Filimonov, Dmitry A.;
Poroikov, Vladimir V.

Publication type:

Article

MetaPASS: A Web Application for Analyzing the Biological Activity Spectrum of Organic Compounds Taking into Account their Biotransformation.

Published in:

Molecular Informatics, 2021, v. 40, n. 4, p. 1, doi. 10.1002/minf.202000231

By:

Rudik, Anastasia;
Dmitriev, Alexander;
Lagunin, Alexey;
Filimonov, Dmitry;
Poroikov, Vladimir

Publication type:

Article

Antihypoxic Action of Panax Japonicus, Tribulus Terrestris and Dioscorea Deltoidea Cell Cultures: In Silico and Animal Studies.

Published in:

Molecular Informatics, 2020, v. 39, n. 11, p. 1, doi. 10.1002/minf.202000093

By:

Lagunin, Alexey;
Povydysh, Maria;
Ivkin, Dmitry;
Luzhanin, Vladimir;
Krasnova, Marina;
Okovityi, Sergei;
Nosov, Alexander;
Titova, Maria;
Tomilova, Svetlana;
Filimonov, Dmitry;
Poroikov, Vladimir

Publication type:

Article

In Silico Identification of Proteins Associated with Drug-induced Liver Injury Based on the Prediction of Drug-target Interactions.

Published in:

Molecular Informatics, 2017, v. 36, n. 7, p. n/a, doi. 10.1002/minf.201600142

By:

Ivanov, Sergey;
Semin, Maxim;
Lagunin, Alexey;
Filimonov, Dmitry;
Poroikov, Vladimir

Publication type:

Article

20th EuroQSAR: Understanding Chemical-Biological Interactions.

Published in:

2015

By:

Poroikov, Vladimir

Publication type:

Editorial

QSAR Modelling of Rat Acute Toxicity on the Basis of PASS Prediction.

Published in:

Molecular Informatics, 2011, v. 30, n. 2/3, p. 241, doi. 10.1002/minf.201000151

By:

Lagunin, Alexey;
Zakharov, Alexey;
Filimonov, Dmitry;
Poroikov, Vladimir

Publication type:

Article

Naturally occurring of α,β-diepoxy-containing compounds: origin, structures, and biological activities.

Published in:

Applied Microbiology & Biotechnology, 2019, v. 103, n. 8, p. 3249, doi. 10.1007/s00253-019-09711-4

By:

Vil, Vera;
Gloriozova, Tatyana A.;
Poroikov, Vladimir V.;
Terent'ev, Alexander O.;
Savidov, Nick;
Dembitsky, Valery M.

Publication type:

Article

Peroxy steroids derived from plant and fungi and their biological activities.

Published in:

Applied Microbiology & Biotechnology, 2018, v. 102, n. 18, p. 7657, doi. 10.1007/s00253-018-9211-2

By:

Vil, Vera A.;
Gloriozova, Tatyana A.;
Poroikov, Vladimir V.;
Terent'ev, Alexander O.;
Savidov, Nick;
Dembitsky, Valery M.

Publication type:

Article

Naturally occurring aromatic steroids and their biological activities.

Published in:

Applied Microbiology & Biotechnology, 2018, v. 102, n. 11, p. 4663, doi. 10.1007/s00253-018-8968-7

By:

Dembitsky, Valery M.;
Savidov, Nick;
Poroikov, Vladimir V.;
Gloriozova, Tatyana A.;
Imbs, Andrew B.

Publication type:

Article

Comparison of Quantitative and Qualitative (Q)SAR Models Created for the Prediction of Ki and IC50 Values of Antitarget Inhibitors.

Published in:

Frontiers in Pharmacology, 2018, p. N.PAG, doi. 10.3389/fphar.2018.01136

By:

Lagunin, Alexey A.;
Romanova, Maria A.;
Zadorozhny, Anton D.;
Kurilenko, Natalia S.;
Shilov, Boris V.;
Pogodin, Pavel V.;
Ivanov, Sergey M.;
Filimonov, Dmitry A.;
Poroikov, Vladimir V.

Publication type:

Article

Integral estimation of xenobiotics' toxicity with regard to their metabolism in human organism.

Published in:

Pure & Applied Chemistry, 2017, v. 89, n. 10, p. 1449, doi. 10.1515/pac-2016-1205

By:

Dmitriev, Alexander;
Rudik, Anastasia;
Filimonov, Dmitry;
Lagunin, Alexey;
Pogodin, Pavel;
Dubovskaja, Varvara;
Bezhentsev, Vladislav;
Ivanov, Sergey;
Druzhilovsky, Dmitry;
Tarasova, Olga;
Poroikov, Vladimir

Publication type:

Article

Pharmacological and Predicted Activities of Natural Azo Compounds.

Published in:

Natural Products & Bioprospecting, 2017, v. 7, n. 1, p. 151, doi. 10.1007/s13659-016-0117-3

By:

Dembitsky, Valery;
Gloriozova, Tatyana;
Poroikov, Vladimir

Publication type:

Article

Prediction of reacting atoms for the major biotransformation reactions of organic xenobiotics.

Published in:

Journal of Cheminformatics, 2016, v. 8, n. 1, p. 1, doi. 10.1186/s13321-016-0183-x

By:

Rudik, Anastasia;
Dmitriev, Alexander;
Lagunin, Alexey;
Filimonov, Dmitry;
Poroikov, Vladimir

Publication type:

Article

CLC-Pred: A freely available web-service for in silico prediction of human cell line cytotoxicity for drug-like compounds.

Published in:

PLoS ONE, 2018, v. 13, n. 1, p. 1, doi. 10.1371/journal.pone.0191838

By:

Lagunin, Alexey A.;
Dubovskaja, Varvara I.;
Rudik, Anastasia V.;
Pogodin, Pavel V.;
Druzhilovskiy, Dmitry S.;
Gloriozova, Tatyana A.;
Filimonov, Dmitry A.;
Sastry, Narahari G.;
Poroikov, Vladimir V.

Publication type:

Article

Antitumor Profile of Carbon-Bridged Steroids (CBS) and Triterpenoids.

Published in:

Marine Drugs, 2021, v. 19, n. 6, p. 324, doi. 10.3390/md19060324

By:

Dembitsky, Valery M.;
Gloriozova, Tatyana A.;
Poroikov, Vladimir V.

Publication type:

Article

Chemical Diversity of Soft Coral Steroids and Their Pharmacological Activities.

Published in:

Marine Drugs, 2020, v. 18, n. 12, p. 613, doi. 10.3390/md18120613

By:

Ermolenko, Ekaterina V.;
Imbs, Andrey B.;
Gloriozova, Tatyana A.;
Poroikov, Vladimir V.;
Sikorskaya, Tatyana V.;
Dembitsky, Valery M.

Publication type:

Article

Assessment of the cardiovascular adverse effects of drug-drug interactions through a combined analysis of spontaneous reports and predicted drug-target interactions.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 7, p. 1, doi. 10.1371/journal.pcbi.1006851

By:

Ivanov, Sergey;
Lagunin, Alexey;
Filimonov, Dmitry;
Poroikov, Vladimir

Publication type:

Article

DIGEP-Pred: web service for in silico prediction of drug-induced gene expression profiles based on structural formula.

Published in:

Bioinformatics, 2013, v. 29, n. 16, p. 2062, doi. 10.1093/bioinformatics/btt322

By:

Lagunin, Alexey;
Ivanov, Sergey;
Rudik, Anastasia;
Filimonov, Dmitry;
Poroikov, Vladimir

Publication type:

Article

Viral Factors in Modulation of Host Immune Response: A Route to Novel Antiviral Agents and New Therapeutic Approaches.

Published in:

International Journal of Molecular Sciences, 2024, v. 25, n. 17, p. 9408, doi. 10.3390/ijms25179408

By:

Tarasova, Olga;
Petrou, Anthi;
Ivanov, Sergey M.;
Geronikaki, Athina;
Poroikov, Vladimir

Publication type:

Article

Towards Novel Potential Molecular Targets for Antidepressant and Antipsychotic Pharmacotherapies.

Published in:

International Journal of Molecular Sciences, 2023, v. 24, n. 11, p. 9482, doi. 10.3390/ijms24119482

By:

Kositsyn, Yuriy M.;
de Abreu, Murilo S.;
Kolesnikova, Tatiana O.;
Lagunin, Alexey A.;
Poroikov, Vladimir V.;
Harutyunyan, Hasmik S.;
Yenkoyan, Konstantin B.;
Kalueff, Allan V.

Publication type:

Article

CLC-Pred 2.0: A Freely Available Web Application for In Silico Prediction of Human Cell Line Cytotoxicity and Molecular Mechanisms of Action for Druglike Compounds.

Published in:

International Journal of Molecular Sciences, 2023, v. 24, n. 2, p. 1689, doi. 10.3390/ijms24021689

By:

Lagunin, Alexey A.;
Rudik, Anastasia V.;
Pogodin, Pavel V.;
Savosina, Polina I.;
Tarasova, Olga A.;
Dmitriev, Alexander V.;
Ivanov, Sergey M.;
Biziukova, Nadezhda Y.;
Druzhilovskiy, Dmitry S.;
Filimonov, Dmitry A.;
Poroikov, Vladimir V.

Publication type:

Article

Identification of Molecular Mechanisms Involved in Viral Infection Progression Based on Text Mining: Case Study for HIV Infection.

Published in:

International Journal of Molecular Sciences, 2023, v. 24, n. 2, p. 1465, doi. 10.3390/ijms24021465

By:

Tarasova, Olga;
Biziukova, Nadezhda;
Shemshura, Andrey;
Filimonov, Dmitry;
Kireev, Dmitry;
Pokrovskaya, Anastasia;
Poroikov, Vladimir V.

Publication type:

Article

Blood Plasma Proteome: A Meta-Analysis of the Results of Protein Quantification in Human Blood by Targeted Mass Spectrometry.

Published in:

2023

By:

Kliuchnikova, Anna A.;
Novikova, Svetlana E.;
Ilgisonis, Ekaterina V.;
Kiseleva, Olga I.;
Poverennaya, Ekaterina V.;
Zgoda, Victor G.;
Moshkovskii, Sergei A.;
Poroikov, Vladimir V.;
Lisitsa, Andrey V.;
Archakov, Alexander I.;
Ponomarenko, Elena A.

Publication type:

Literature Review

New Positive TRPC6 Modulator Penetrates Blood–Brain Barrier, Eliminates Synaptic Deficiency and Restores Memory Deficit in 5xFAD Mice.

Published in:

International Journal of Molecular Sciences, 2022, v. 23, n. 21, p. 13552, doi. 10.3390/ijms232113552

By:

Zernov, Nikita;
Veselovsky, Alexander V.;
Poroikov, Vladimir V.;
Melentieva, Daria;
Bolshakova, Anastasia;
Popugaeva, Elena

Publication type:

Article

Prediction of Protein–ligand Interaction Based on Sequence Similarity and Ligand Structural Features.

Published in:

International Journal of Molecular Sciences, 2020, v. 21, n. 21, p. 8152, doi. 10.3390/ijms21218152

By:

Karasev, Dmitry;
Sobolev, Boris;
Lagunin, Alexey;
Filimonov, Dmitry;
Poroikov, Vladimir

Publication type:

Article

Computer-Aided Estimation of Biological Activity Profiles of Drug-Like Compounds Taking into Account Their Metabolism in Human Body.

Published in:

International Journal of Molecular Sciences, 2020, v. 21, n. 20, p. 7492, doi. 10.3390/ijms21207492

By:

Filimonov, Dmitry A.;
Rudik, Anastassia V.;
Dmitriev, Alexander V.;
Poroikov, Vladimir V.

Publication type:

Article

A Computational Approach for the Prediction of Treatment History and the Effectiveness or Failure of Antiretroviral Therapy.

Published in:

International Journal of Molecular Sciences, 2020, v. 21, n. 3, p. 748, doi. 10.3390/ijms21030748

By:

Tarasova, Olga;
Biziukova, Nadezhda;
Kireev, Dmitry;
Lagunin, Alexey;
Ivanov, Sergey;
Filimonov, Dmitry;
Poroikov, Vladimir

Publication type:

Article

Prediction of Protein–Ligand Interaction Based on the Positional Similarity Scores Derived from Amino Acid Sequences.

Published in:

International Journal of Molecular Sciences, 2020, v. 21, n. 1, p. 24, doi. 10.3390/ijms21010024

By:

Karasev, Dmitry;
Sobolev, Boris;
Lagunin, Alexey;
Filimonov, Dmitry;
Poroikov, Vladimir

Publication type:

Article

Etoposide-Induced Apoptosis in Cancer Cells Can Be Reinforced by an Uncoupled Link between Hsp70 and Caspase-3.

Published in:

International Journal of Molecular Sciences, 2018, v. 19, n. 9, p. 2519, doi. 10.3390/ijms19092519

By:

Sverchinsky, Dmitry V.;
Nikotina, Alina D.;
Komarova, Elena Y.;
Mikhaylova, Elena R.;
Aksenov, Nikolay D.;
Lazarev, Vladimir F.;
Mitkevich, Vladimir A.;
Suezov, Roman;
Druzhilovskiy, Dmitry S.;
Poroikov, Vladimir V.;
Margulis, Boris A.;
Guzhova, Irina V.

Publication type:

Article

Functional classification of proteins based onprojection of amino acid sequences: application forprediction of protein kinase substrates.

Published in:

BMC Bioinformatics, 2010, v. 11, p. 313, doi. 10.1186/1471-2105-11-313

By:

Sobolev, Boris;
Filimonov, Dmitry;
Lagunin, Alexey;
Zakharov, Alexey;
Koborova, Olga;
Kel, Alexander;
Poroikov, Vladimir

Publication type:

Article