Works matching AU Pongor, Sándor

Results: 78

PTMTreeSearch: a novel two-stage tree-search algorithm with pruning rules for the identification of post-translational modification of proteins in MS/MS spectra.

Published in:

Bioinformatics, 2014, v. 30, n. 2, p. 234

By:

Kertész-Farkas, Attila;
Reiz, Beáta;
Vera, Roberto;
Myers, Michael P.;
Pongor, Sándor

Publication type:

Article

Chemical rule-based filtering of MS/MS spectra.

Published in:

Bioinformatics, 2013, v. 29, n. 7, p. 925, doi. 10.1093/bioinformatics/btt061

By:

Reiz, Beáta;
Kertész-Farkas, Attila;
Pongor, Sándor;
Myers, Michael P.

Publication type:

Article

Multi-netclust: an efficient tool for finding connected clusters in multi-parametric networks.

Published in:

Bioinformatics, 2010, v. 26, n. 19, p. 2482, doi. 10.1093/bioinformatics/btq435

By:

Kuzniar, Arnold;
Dhir, Somdutta;
Nijveen, Harm;
Pongor, Sándor;
Leunissen, Jack A.M.

Publication type:

Article

Application of a simple likelihood ratio approximant to protein sequence classification.

Published in:

Bioinformatics, 2006, v. 22, n. 23, p. 2865, doi. 10.1093/bioinformatics/btl512

By:

Kaján, László;
Kertész-Farkas, Attila;
Franklin, Dino;
Ivanova, Neli;
Kocsor, András;
Pongor, Sándor

Publication type:

Article

Application of compression-based distance measures to protein sequence classification: a methodological study.

Published in:

Bioinformatics, 2006, v. 22, n. 4, p. 407, doi. 10.1093/bioinformatics/bti806

By:

András Kocsor;
Attila Kertész-Farkas;
László Kaján;
Sándor Pongor

Publication type:

Article

COVID-19 Infection Alters the Microbiome: Elite Athletes and Sedentary Patients Have Similar Bacterial Flora.

Published in:

Genes, 2021, v. 12, n. 10, p. 1577, doi. 10.3390/genes12101577

By:

Babszky, Gergely;
Torma, Ferenc;
Aczel, Dora;
Bakonyi, Peter;
Gombos, Zoltan;
Feher, Janos;
Szabó, Dóra;
Ligeti, Balázs;
Pongor, Sándor;
Balogh, Laszlo;
Pósa, Anikó;
Radak, Zsolt

Publication type:

Article

Multispecies microbial communities. Part II: Principles of molecular communications.

Published in:

2010

By:

Kerényi, Ádám;
Suárez-Moreno, Zulma Rocío;
Venturi, Vittorio;
Pongor, Sándor

Publication type:

Essay

Multispecies microbial communities. Part I: quorum sensing signaling in bacterial and mixed bacterial-fungal communities.

Published in:

Medical Mycology / Mikologia, 2010, v. 17, n. 2, p. 108

By:

Suárez-Moreno, Zulma Rocío;
Kerényi, Ádám;
Pongor, Sándor;
Venturi, Vittorio

Publication type:

Article

Microsimulation based quantitative analysis of COVID-19 management strategies.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 1, p. 1, doi. 10.1371/journal.pcbi.1009693

By:

Reguly, István Z.;
Csercsik, Dávid;
Juhász, János;
Tornai, Kálmán;
Bujtár, Zsófia;
Horváth, Gergely;
Keömley-Horváth, Bence;
Kós, Tamás;
Cserey, György;
Iván, Kristóf;
Pongor, Sándor;
Szederkényi, Gábor;
Röst, Gergely;
Csikász-Nagy, Attila

Publication type:

Article

IS: a web-site for intron statistics.

Published in:

Bioinformatics, 2003, v. 19, n. 4, p. 543, doi. 10.1093/bioinformatics/btg019

By:

Barta, Endre;
Kaján, László;
Pongor, Sándor

Publication type:

Article

DPX: for the analysis of the protein core.

Published in:

Bioinformatics, 2003, v. 19, n. 2, p. 313, doi. 10.1093/bioinformatics/19.2.313

By:

Pintar, Alessandro;
Carugo, Oliviero;
Pongor, Sándor

Publication type:

Article

CX, an algorithm that identifies protruding atoms in proteins.

Published in:

Bioinformatics, 2002, v. 18, n. 7, p. 980, doi. 10.1093/bioinformatics/18.7.980

By:

Pintar, Alessandro;
Carugo, Oliviero;
Pongor, Sándor

Publication type:

Article

A simple probabilistic scoring method for protein domain identification.

Published in:

Bioinformatics, 2000, v. 16, n. 12, p. 1155, doi. 10.1093/bioinformatics/16.12.1155

By:

Murvai, János;
Vlahovicek, Kristian;
Pongor, Sándor

Publication type:

Article

model.it : building three dimensional DNA models from sequence data.

Published in:

Bioinformatics, 2000, v. 16, n. 11, p. 1044, doi. 10.1093/bioinformatics/16.11.1044

By:

Vlahovicek, Kristian;
Pongor, Sándor

Publication type:

Article

The domain‐server: direct prediction of protein domain‐homologies from BLAST search.

Published in:

Bioinformatics, 1999, v. 15, n. 4, p. 343, doi. 10.1093/bioinformatics/15.4.343

By:

Murvai, János;
Vlahovicek, Kristian;
Barta, Endre;
Parthasarathy, Subbiah;
Hegyi, Hedvig;
Pfeiffer, Friedhelm;
Pongor, Sándor

Publication type:

Article

Colonization Dynamics of Multidrug-Resistant Klebsiella pneumoniae Are Dictated by Microbiota-Cluster Group Behavior over Individual Antibiotic Susceptibility: A Metataxonomic Analysis.

Published in:

Antibiotics (2079-6382), 2021, v. 10, n. 3, p. 268, doi. 10.3390/antibiotics10030268

By:

Juhász, János;
Ligeti, Balázs;
Gajdács, Márió;
Makra, Nóra;
Ostorházi, Eszter;
Farkas, Ferenc Balázs;
Stercz, Balázs;
Tóth, Ákos;
Domokos, Judit;
Pongor, Sándor;
Szabó, Dóra;
Mezzatesta, Maria Lina

Publication type:

Article

A Network-Based Target Overlap Score for Characterizing Drug Combinations: High Correlation with Cancer Clinical Trial Results.

Published in:

PLoS ONE, 2015, v. 10, n. 6, p. 1, doi. 10.1371/journal.pone.0129267

By:

Ligeti, Balázs;
Pénzváltó, Zsófia;
Vera, Roberto;
Győrffy, Balázs;
Pongor, Sándor

Publication type:

Article

ComQXPA Quorum Sensing Systems May Not Be Unique to Bacillus subtilis: A Census in Prokaryotic Genomes.

Published in:

PLoS ONE, 2014, v. 9, n. 5, p. 1, doi. 10.1371/journal.pone.0096122

By:

Dogsa, Iztok;
Choudhary, Kumari Sonal;
Marsetic, Ziva;
Hudaiberdiev, Sanjarbek;
Vera, Roberto;
Pongor, Sándor;
Mandic-Mulec, Ines

Publication type:

Article

Emergence of Collective Territorial Defense in Bacterial Communities: Horizontal Gene Transfer Can Stabilize Microbiomes.

Published in:

PLoS ONE, 2014, v. 9, n. 4, p. 1, doi. 10.1371/journal.pone.0095511

By:

Juhász, János;
Kertész-Farkas, Attila;
Szabó, Dóra;
Pongor, Sándor

Publication type:

Article

Stability of Multispecies Bacterial Communities: Signaling Networks May Stabilize Microbiomes.

Published in:

PLoS ONE, 2013, v. 8, n. 3, p. 1, doi. 10.1371/journal.pone.0057947

By:

Kerényi, Ádám;
Bihary, Dóra;
Venturi, Vittorio;
Pongor, Sándor

Publication type:

Article

Novel Protocol for the Chemical Synthesis of Crustacean Hyperglycemic Hormone Analogues -- An Efficient Experimental Tool for Studying Their Functions.

Published in:

PLoS ONE, 2012, v. 7, n. 1, p. 1, doi. 10.1371/journal.pone.0030052

By:

Mosco, Alessandro;
Zlatev, Vientsislav;
Guarnaccia, Corrado;
Pongor, Sándor;
Campanella, Antonella;
Zahariev, Sotir;
Giulianini, Piero G.

Publication type:

Article

Co-swarming and local collapse: quorum sensing conveys resilience to bacterial communities by localizing cheater mutants in Pseudomonas aeruginosa.

Published in:

PLoS ONE, 2010, v. 5, n. 4, p. 1, doi. 10.1371/journal.pone.0009998

By:

Venturi, Vittorio;
Bertani, Iris;
Kerényi, Ádám;
Netotea, Sergiu;
Pongor, Sándor

Publication type:

Article

Preparation of high-potency, non-aggregating insulins using a novel sulfation procedure.

Published in:

1983

By:

Pongor, Sándor;
Brownlee, Michael;
Cerami, Anthony;
Pongor, S;
Brownlee, M;
Cerami, A

Publication type:

journal article

Census of solo LuxR genes in prokaryotic genomes.

Published in:

Frontiers in Cellular & Infection Microbiology, 2015, p. 1, doi. 10.3389/fcimb.2015.00020

By:

Hudaiberdiev, Sanjarbek;
Choudhary, Kumari S.;
Vera Alvarez, Roberto;
Gelencsér, Zsolt;
Ligeti, Balázs;
Lamba, Doriano;
Pongor, Sándor

Publication type:

Article

Census of solo LuxR genes in prokaryotic genomes.

Published in:

Frontiers in Cellular & Infection Microbiology, 2015, p. 1, doi. 10.3389/fcimb.2015.00020

By:

Hudaiberdiev, Sanjarbek;
Sonal Choudhary, Kumari;
Vera Alvarez, Roberto;
Gelencsér, Zsolt;
Ligeti, Balázs;
Lamba, Doriano;
Pongor, Sándor

Publication type:

Article

The virtue of temperance: built-in negative regulators of quorum sensing in Pseudomonas.

Published in:

Molecular Microbiology, 2011, v. 82, n. 5, p. 1060, doi. 10.1111/j.1365-2958.2011.07890.x

By:

Venturi, Vittorio;
Rampioni, Giordano;
Pongor, Sándor;
Leoni, Livia

Publication type:

Article

Differential signal sensitivities can contribute to the stability of multispecies bacterial communities.

Published in:

Biology Direct, 2017, v. 12, p. 1, doi. 10.1186/s13062-017-0192-3

By:

Juhász, János;
Bihary, Dóra;
Jády, Attila;
Pongor, Sándor;
Ligeti, Balázs

Publication type:

Article

Locality versus globality in bacterial signalling: can local communication stabilize bacterial communities?

Published in:

Biology Direct, 2010, v. 5, p. 30, doi. 10.1186/1745-6150-5-30

By:

Venturi, Vittorio;
Kerényi, Ádám;
Reiz, Beéta;
Bihary, Dóra;
Pongor, Sándor

Publication type:

Article

A simple model for the early events of quorum sensing in Pseudomonas aeruginosa: modeling bacterial swarming as the movement of an "activation zone".

Published in:

Biology Direct, 2009, v. 4, p. 1, doi. 10.1186/1745-6150-4-6

By:

Netotea, Sergiu;
Bertani, Iris;
Steindler, Laura;
Kerényi, Ádám;
Venturi, Vittorio;
Pongor, Sándor

Publication type:

Article

The intracellular region of Notch ligands: does the tail make the difference?

Published in:

Biology Direct, 2007, v. 2, p. 1, doi. 10.1186/1745-6150-2-19

By:

Pintar, Alessandro;
De Biasio, Alfredo;
Popovic, Matija;
Ivanova, Neli;
Pongor, Sándor

Publication type:

Article

Modeling bacterial quorum sensing in open and closed environments: potential discrepancies between agar plate and culture flask experiments.

Published in:

Journal of Molecular Modeling, 2014, v. 20, n. 7, p. 1, doi. 10.1007/s00894-014-2248-y

By:

Bihary, Dóra;
Tóth, Marietta;
Kerényi, Ádám;
Venturi, Vittorio;
Pongor, Sándor

Publication type:

Article

Non-random features of loop-size chromatin fragmentation.

Published in:

Journal of Cellular Biochemistry, 2003, v. 89, n. 6, p. 1193

By:

Ildikó Szilágyi;
Tamás Varga;
Lóránt Székvölgyi;
Éva Hegedüs;
Katalin Goda;
Viktória Kaczur;
Zsolt Bacsó;
Yuji Nakayama;
János Pósafi;
Sándor Pongor;
Gábor Szabó

Publication type:

Article

KRAS driven expression signature has prognostic power superior to mutation status in non-small cell lung cancer.

Published in:

International Journal of Cancer, 2017, v. 140, n. 4, p. 930, doi. 10.1002/ijc.30509

By:

Nagy, Ádám;
Pongor, Lőrinc Sándor;
Szabó, András;
Santarpia, Mariacarmela;
Győrffy, Balázs

Publication type:

Article

Exon 6 of human Jagged-1 encodes an autonomously folding unit

Published in:

FEBS Letters, 2004, v. 574, n. 1-3, p. 156, doi. 10.1016/j.febslet.2004.08.022

By:

Guarnaccia, Corrado;
Pintar, Alessandro;
Pongor, Sándor

Publication type:

Article

The 'first in-last out' hypothesis on protein folding revisited.

Published in:

Proteins, 2005, v. 60, n. 4, p. 584, doi. 10.1002/prot.20529

By:

Pintar, Alessandro;
Pongor, Sándor

Publication type:

Article

Vicinal disulfide bridge conformers by experimental methods and by ab initio and DFT molecular computations.

Published in:

Proteins, 2004, v. 55, n. 1, p. 152, doi. 10.1002/prot.10581

By:

Ilona Hudáky;
Zoltán Gáspári;
Oliviero Carugo;
Maša Čemažar;
Sándor Pongor;
András Perczel

Publication type:

Article

A snapshot of 3649 Web-based services published between 1994 and 2017 shows a decrease in availability after 2 years.

Published in:

Briefings in Bioinformatics, 2019, v. 20, n. 3, p. 1004, doi. 10.1093/bib/bbx159

By:

Ősz, Ágnes;
Pongor, Lőrinc Sándor;
Szirmai, Danuta;
Győrffy, Balázs

Publication type:

Article

ROC analysis: applications to the classification of biological sequences and 3D structures.

Published in:

Briefings in Bioinformatics, 2008, v. 9, n. 3, p. 198, doi. 10.1093/bib/bbm064

By:

Sonego, Paolo;
Kocsor, András;
Pongor, Sándor

Publication type:

Article

The influence of antibiotics on transitory resistome during gut colonization with CTX-M-15 and OXA-162 producing Klebsiella pneumoniae ST15.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-85766-6

By:

Stercz, Balázs;
Farkas, Ferenc B.;
Tóth, Ákos;
Gajdács, Márió;
Domokos, Judit;
Horváth, Viola;
Ostorházi, Eszter;
Makra, Nóra;
Kocsis, Béla;
Juhász, János;
Ligeti, Balázs;
Pongor, Sándor;
Szabó, Dóra

Publication type:

Article

Efficient synthesis and comparative studies of the arginine and Nω,Nω-dimethylarginine forms of the human nucleolin glycine/arginine rich domain.

Published in:

Journal of Peptide Science, 2005, v. 11, n. 1, p. 17, doi. 10.1002/psc.577

By:

Zahariev, Sotir;
Guarnaccia, Corrado;
Zanuttin, Francesco;
Pintar, Alessandro;
Esposito, Gennaro;
Maravić, Gordana;
Krust, Bernard;
Hovanessian, Ara G.;
Pongor, Sándor

Publication type:

Article

Uncovering Potential Therapeutic Targets in Colorectal Cancer by Deciphering Mutational Status and Expression of Druggable Oncogenes.

Published in:

Cancers, 2019, v. 11, n. 7, p. 983, doi. 10.3390/cancers11070983

By:

Menyhart, Otília;
Kakisaka, Tatsuhiko;
Pongor, Lőrinc Sándor;
Uetake, Hiroyuki;
Goel, Ajay;
Győrffy, Balázs

Publication type:

Article

Vicinal disulfide turns.

Published in:

Protein Engineering, 2003, v. 16, n. 9, p. 637, doi. 10.1093/protein/gzg088

By:

Oliviero Carugo;
Maša Čemažar;
Sotir Zahariev;
Ilona Hudáky;
Zoltán Gáspári;
András Perczel;
Sándor Pongor

Publication type:

Article

Structural analysis of free and enzyme-bound amaranth α-amylase inhibitor: classification within the knottin fold superfamily and analysis of its functional flexibility.

Published in:

Protein Engineering, 2001, v. 14, n. 9, p. 639, doi. 10.1093/protein/14.9.639

By:

Carugo, Oliviero;
Lu, Shanyun;
Luo, Jingchu;
Gu, Xiaocheng;
Liang, Songping;
Strobl, Stefan;
Pongor, Sándor

Publication type:

Article

Modular construction of extended DNA recognition surfaces: mutant DNA-binding domains of the 434 repressor as building blocks.

Published in:

Protein Engineering, 2001, v. 14, n. 8, p. 591, doi. 10.1093/protein/14.8.591

By:

Liang, Tiebing;
Chen, Jinqiu;
Tjörnhammar, Marie-Louise;
Pongor, Sándor;
Simoncsits, András

Publication type:

Article

COVIDOUTCOME—estimating COVID severity based on mutation signatures in the SARS-CoV-2 genome.

Published in:

Database: The Journal of Biological Databases & Curation, 2021, v. 2021, p. 1, doi. 10.1093/database/baab020

By:

Nagy, Ádám;
Ligeti, Balázs;
Szebeni, János;
Pongor, Sándor;
Győrffy, Balázs

Publication type:

Article

JBioWH: an open-source Java framework for bioinformatics data integration.

Published in:

Database: The Journal of Biological Databases & Curation, 2013, v. 2013, p. 1, doi. 10.1093/database/bat051

By:

Vera, Roberto;
Perez-Riverol, Yasset;
Perez, Sonia;
Ligeti, Balázs;
Kertész-Farkas, Attila;
Pongor, Sándor

Publication type:

Article

SIMULATION OF COMMUNICATION AND COOPERATION IN MULTISPECIES BACTERIAL COMMUNITIES WITH AN AGENT BASED MODEL.

Published in:

Scalable Computing: Practice & Experience, 2012, v. 13, n. 1, p. 21

By:

Bihary, Dóra;
Kerényi, Ádám;
Gelencsér, Zsolt;
Netotea, Sergiu;
Kertész-Farkas, Attila;
Venturi, Vittorio;
Pongor, Sándor

Publication type:

Article

Motif oriented high-resolution analysis of ChIP-seq data reveals the topological order of CTCF and cohesin proteins on DNA.

Published in:

BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-2940-7

By:

Nagy, Gergely;
Czipa, Erik;
Steiner, László;
Nagy, Tibor;
Pongor, Sándor;
Nagy, László;
Barta, Endre

Publication type:

Article

Classifying the Topology of AHL-Driven Quorum Sensing Circuits in Proteobacterial Genomes.

Published in:

Sensors (14248220), 2012, v. 12, n. 5, p. 5432, doi. 10.3390/s120505432

By:

Gelencsér, Zsolt;
Sonal Choudhary, Kumari;
Goncalves Coutinho, Bruna;
Hudaiberdiev, Sanjarbek;
Galbáts, Borisz;
Venturi, Vittorio;
Pongor, Sándor

Publication type:

Article

Immunolocalization of a novel annexin-like protein encoded by a stress and abscisic acid responsive gene in alfalfa.

Published in:

Plant Journal, 1998, v. 15, n. 2, p. 185, doi. 10.1046/j.1365-313X.1998.00194.x

By:

Kovács, Izabella;
Ayaydin, Ferhan;
Oberschall, Attila;
Ipacs, Ildikó;
Bottka, Sándor;
Pongor, Sándor;
Dudits, Dénes;
Tóth, Éva Csordás

Publication type:

Article