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Graph embedding and transfer learning can help predict potential species interaction networks despite data limitations.
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- Methods in Ecology & Evolution, 2023, v. 14, n. 12, p. 2917, doi. 10.1111/2041-210X.14228
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- Article
Postdoctoral scientists are mentors, and it is time to recognize their work.
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- PLoS Biology, 2023, v. 21, n. 11, p. 1, doi. 10.1371/journal.pbio.3002349
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- Article
What constrains food webs? A maximum entropy framework for predicting their structure with minimal biases.
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- PLoS Computational Biology, 2023, v. 19, n. 9, p. 1, doi. 10.1371/journal.pcbi.1011458
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- Article
SpatialBoundaries.jl: edge detection using spatial wombling.
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- Ecography, 2023, v. 2023, n. 5, p. 1, doi. 10.1111/ecog.06609
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- Article
Guidelines for the prediction of species interactions through binary classification.
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- Methods in Ecology & Evolution, 2023, v. 14, n. 5, p. 1333, doi. 10.1111/2041-210X.14071
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- Article
Shortcomings of reusing species interaction networks created by different sets of researchers.
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- PLoS Biology, 2023, v. 21, n. 4, p. 1, doi. 10.1371/journal.pbio.3002068
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- Article
Mismatch between IUCN range maps and species interactions data illustrated using the Serengeti food web.
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- PeerJ, 2023, p. 1, doi. 10.7717/peerj.14620
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- Article
Food web reconstruction through phylogenetic transfer of low‐rank network representation.
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- Methods in Ecology & Evolution, 2022, v. 13, n. 12, p. 2838, doi. 10.1111/2041-210X.13835
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- Article
PERFICT: A Re‐imagined foundation for predictive ecology.
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- Ecology Letters, 2022, v. 25, n. 6, p. 1345, doi. 10.1111/ele.13994
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- Article
Phylogenetic and functional clustering illustrate the roles of adaptive radiation and dispersal filtering in jointly shaping late‐Quaternary mammal assemblages on oceanic islands.
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- Ecology Letters, 2022, v. 25, n. 5, p. 1250, doi. 10.1111/ele.13997
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- Article
Evaluating ecological uniqueness over broad spatial extents using species distribution modelling.
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- Oikos, 2022, v. 2022, n. 5, p. 1, doi. 10.1111/oik.09063
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- Article
Phylogenetic congruence between Neotropical primates and plants is driven by frugivory.
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- Ecology Letters, 2022, v. 25, n. 2, p. 320, doi. 10.1111/ele.13918
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- Article
Global trends in the trophic specialisation of flower‐visitor networks are explained by current and historical climate.
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- Ecology Letters, 2022, v. 25, n. 1, p. 113, doi. 10.1111/ele.13910
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- Article
Phenology and flowering overlap drive specialisation in plant–pollinator networks.
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- Ecology Letters, 2021, v. 24, n. 12, p. 2648, doi. 10.1111/ele.13884
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- Article
Sampling and asymptotic network properties of spatial multi‐trophic networks.
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- Oikos, 2021, v. 130, n. 12, p. 2250, doi. 10.1111/oik.08650
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- Article
Data Proliferation, Reconciliation, and Synthesis in Viral Ecology.
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- BioScience, 2021, v. 71, n. 11, p. 1148, doi. 10.1093/biosci/biab080
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- Article
Corrigendum: Functional Diversity: An Epistemic Roadmap.
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- BioScience, 2021, v. 71, n. 9, p. 996, doi. 10.1093/biosci/biab078
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- Article
Global knowledge gaps in species interaction networks data.
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- Journal of Biogeography, 2021, v. 48, n. 7, p. 1552, doi. 10.1111/jbi.14127
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- Article
Environment–host–microbial interactions shape the Sarraceniapurpurea microbiome at the continental scale.
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- Ecology, 2021, v. 102, n. 5, p. 1, doi. 10.1002/ecy.3308
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- Article
Optimal transportation theory for species interaction networks.
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- Ecology & Evolution (20457758), 2021, v. 11, n. 9, p. 3841, doi. 10.1002/ece3.7254
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- Article
Network measures in animal social network analysis: Their strengths, limits, interpretations and uses.
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- Methods in Ecology & Evolution, 2021, v. 12, n. 1, p. 10, doi. 10.1111/2041-210X.13366
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- Article
Modelling and inference for the movement of interacting animals.
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- Methods in Ecology & Evolution, 2021, v. 12, n. 1, p. 54, doi. 10.1111/2041-210X.13468
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- Article
CMRnet: An r package to derive networks of social interactions and movement from mark–recapture data.
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- Methods in Ecology & Evolution, 2021, v. 12, n. 1, p. 70, doi. 10.1111/2041-210X.13502
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- Article
Constructing and analysing time‐aggregated networks: The role of bootstrapping, permutation and simulation.
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- Methods in Ecology & Evolution, 2021, v. 12, n. 1, p. 114, doi. 10.1111/2041-210X.13351
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- Article
A Bayesian network approach to trophic metacommunities shows that habitat loss accelerates top species extinctions.
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- Ecology Letters, 2020, v. 23, n. 12, p. 1849, doi. 10.1111/ele.13607
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- Article
An individual‐based model for the eco‐evolutionary emergence of bipartite interaction networks.
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- Ecology Letters, 2020, v. 23, n. 11, p. 1623, doi. 10.1111/ele.13592
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- Article
Spatial resolution and location impact group structure in a marine food web.
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- Ecology Letters, 2020, v. 23, n. 10, p. 1451, doi. 10.1111/ele.13567
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- Article
cxr: A toolbox for modelling species coexistence in R.
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- Methods in Ecology & Evolution, 2020, v. 11, n. 10, p. 1221, doi. 10.1111/2041-210X.13443
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- Article
pycoalescence and rcoalescence: Packages for simulating spatially explicit neutral models of biodiversity.
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- Methods in Ecology & Evolution, 2020, v. 11, n. 10, p. 1237, doi. 10.1111/2041-210X.13451
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- Article
Functional diversity metrics using kernel density n‐dimensional hypervolumes.
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- Methods in Ecology & Evolution, 2020, v. 11, n. 8, p. 986, doi. 10.1111/2041-210X.13424
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- Article
The r toolbox grainscape for modelling and visualizing landscape connectivity using spatially explicit networks.
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- Methods in Ecology & Evolution, 2020, v. 11, n. 4, p. 591, doi. 10.1111/2041-210X.13350
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- Article
EcologicalNetworks.jl: analysing ecological networks of species interactions.
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- Ecography, 2019, v. 42, n. 11, p. 1850, doi. 10.1111/ecog.04310
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- Article
Functional Diversity: An Epistemic Roadmap.
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- BioScience, 2019, v. 69, n. 10, p. 800, doi. 10.1093/biosci/biz089
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- Article
Analysing the dynamics and relative influence of variables affecting ecosystem responses using functional PCA and boosted regression trees: A seagrass case study.
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- Methods in Ecology & Evolution, 2019, v. 10, n. 10, p. 1723, doi. 10.1111/2041-210X.13269
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- Article
Atlantis: A spatially explicit end‐to‐end marine ecosystem model with dynamically integrated physics, ecology and socio‐economic modules.
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- Methods in Ecology & Evolution, 2019, v. 10, n. 10, p. 1814, doi. 10.1111/2041-210X.13272
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- Article
Ecogeographical rules and the macroecology of food webs.
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- Global Ecology & Biogeography, 2019, v. 28, n. 9, p. 1204, doi. 10.1111/geb.12925
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- Article
Revealing biases in the sampling of ecological interaction networks.
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- PeerJ, 2019, p. 1, doi. 10.7717/peerj.7566
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- Article
AviaNZ: A future‐proofed program for annotation and recognition of animal sounds in long‐time field recordings.
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- Methods in Ecology & Evolution, 2019, v. 10, n. 8, p. 1189, doi. 10.1111/2041-210X.13213
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- Article
pathtrackr: An r package for video tracking and analysing animal movement.
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- Methods in Ecology & Evolution, 2019, v. 10, n. 8, p. 1196, doi. 10.1111/2041-210X.13200
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- Article
MVSE: An R‐package that estimates a climate‐driven mosquito‐borne viral suitability index.
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- Methods in Ecology & Evolution, 2019, v. 10, n. 8, p. 1357, doi. 10.1111/2041-210X.13205
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- Article
Inferring community assembly processes from macroscopic patterns using dynamic eco‐evolutionary models and Approximate Bayesian Computation (ABC).
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- Methods in Ecology & Evolution, 2019, v. 10, n. 4, p. 450, doi. 10.1111/2041-210X.13129
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- Article
Bringing Elton and Grinnell together: a quantitative framework to represent the biogeography of ecological interaction networks.
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- Ecography, 2019, v. 42, n. 3, p. 401, doi. 10.1111/ecog.04006
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- Article
Inferring predator–prey interactions in food webs.
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- Methods in Ecology & Evolution, 2019, v. 10, n. 3, p. 356, doi. 10.1111/2041-210X.13125
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- Article
Extension of the gambin model to multimodal species abundance distributions.
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- Methods in Ecology & Evolution, 2019, v. 10, n. 3, p. 432, doi. 10.1111/2041-210X.13122
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- Article
Analysing ecological networks of species interactions.
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- Biological Reviews, 2019, v. 94, n. 1, p. 16, doi. 10.1111/brv.12433
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- Article
Mangal: An open infrastructure for ecological interactions.
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- 2019
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- Abstract
Data-based, synthesis driven: Setting the agenda for computational ecology.
- Published in:
- Ideas In Ecology & Evolution, 2019, v. 12, p. 9, doi. 10.24908/iee.2019.12.2.e
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- Article
Homogenization of species composition and species association networks are decoupled.
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- Global Ecology & Biogeography, 2018, v. 27, n. 12, p. 1481, doi. 10.1111/geb.12825
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- Article
Compositional turnover in host and parasite communities does not change network structure.
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- Ecography, 2018, v. 41, n. 9, p. 1534, doi. 10.1111/ecog.03514
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- Article
Identifying a common backbone of interactions underlying food webs from different ecosystems.
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- Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-05056-0
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- Article