Works matching AU Pisabarro, M.

Results: 47

The effect of interleukin‐8 truncations on its interactions with glycosaminoglycans.

Published in:

Biopolymers, 2018, v. 109, n. 10, p. N.PAG, doi. 10.1002/bip.23103

By:

Nordsieck, Karoline;
Baumann, Lars;
Hintze, Vera;
Pisabarro, M. Teresa;
Schnabelrauch, Matthias;
Beck‐Sickinger, Annette G.;
Samsonov, Sergey A.

Publication type:

Article

MSPocket: an orientation-independent algorithm for the detection of ligand binding pockets.

Published in:

Bioinformatics, 2011, v. 27, n. 3, p. 351, doi. 10.1093/bioinformatics/btq672

By:

Zhu, Hongbo;
Pisabarro, M. Teresa

Publication type:

Article

Amide-to-Ester Substitution in Coiled Coils: The Effect of Removing Hydrogen Bonds on Protein Structure.

Published in:

Angewandte Chemie International Edition, 2007, v. 46, n. 41, p. 7766, doi. 10.1002/anie.200702218

By:

Scheike, Jessica A.;
Baldauf, Carsten;
Spengler, Jan;
Albericio, Fernando;
Pisabarro, M. Teresa;
Koksch, Beate

Publication type:

Article

Glycosaminoglycan Monosaccharide Blocks Analysis by Quantum Mechanics, Molecular Dynamics, and Nuclear Magnetic Resonance.

Published in:

BioMed Research International, 2014, v. 2014, p. 1, doi. 10.1155/2014/808071

By:

Samsonov, Sergey A.;
Theisgen, Stephan;
Riemer, Thomas;
Huster, Daniel;
Teresa Pisabarro, M.

Publication type:

Article

3D Profile-Based Approach to Proteome-Wide Discovery of Novel Human Chemokines.

Published in:

PLoS ONE, 2012, v. 7, n. 5, p. 1, doi. 10.1371/journal.pone.0036151

By:

Tomczak, Aurelie;
Sontheimer, Jana;
Drechsel, David;
Hausdorf, Rainer;
Gentzel, Marc;
Shevchenko, Andrej;
Eichler, Stefanie;
Fahmy, Karim;
Buchholz, Frank;
Pisabarro, M. Teresa

Publication type:

Article

Position-Dependent Effects of Fluorinated Amino Acids on the Hydrophobic Core Formation of a Heterodimeric Coiled Coil.

Published in:

Chemistry - A European Journal, 2009, v. 15, n. 31, p. 7628, doi. 10.1002/chem.200802136

By:

Salwiczek, Mario;
Samsonov, Sergey;
Vagt, Toni;
Nyakatura, Elisabeth;
Fleige, Emanuel;
Numata, Jorge;
Cölfen, Helmut;
Pisabarro, M. Teresa;
Koksch, Beate

Publication type:

Article

Computational drill down on FGF1-heparin interactions through methodological evaluation.

Published in:

Glycoconjugate Journal, 2017, v. 34, n. 3, p. 427, doi. 10.1007/s10719-016-9745-4

By:

Babik, Sándor;
Samsonov, Sergey;
Pisabarro, M.

Publication type:

Article

Nucleolar protein TAAP1/C22orf46 confers pro-survival signaling in non-small cell lung cancer.

Published in:

Life Science Alliance, 2024, v. 7, n. 4, p. 1, doi. 10.26508/lsa.202302257

By:

Döring, Marietta;
Brux, Melanie;
Paszkowski-Rogacz, Maciej;
Guillem-Gloria, Pedro M.;
Buchholz, Frank;
Pisabarro, M. Teresa;
Theis, Mirko

Publication type:

Article

Discovery of Nigri/nox and Panto/pox site-specific recombinase systems facilitates advanced genome engineering.

Published in:

Scientific Reports, 2016, p. 30130, doi. 10.1038/srep30130

By:

Karimova, Madina;
Splith, Victoria;
Karpinski, Janet;
Pisabarro, M. Teresa;
Buchholz, Frank

Publication type:

Article

A molecular dynamics approach to study the importance of solvent in protein interactions.

Published in:

Proteins, 2008, v. 73, n. 2, p. 515, doi. 10.1002/prot.22076

By:

Samsonov, Sergey;
Teyra, Joan;
Pisabarro, M. Teresa

Publication type:

Article

Characterization of interfacial solvent in protein complexes and contribution of wet spots to the interface description.

Published in:

Proteins, 2007, v. 67, n. 4, p. 1087, doi. 10.1002/prot.21394

By:

Teyra, Joan;
Pisabarro, M. T.

Publication type:

Article

Homology modeling of the Abl-SH3 domain.

Published in:

Proteins, 1994, v. 20, n. 3, p. 203, doi. 10.1002/prot.340200302

By:

Pisabarro, M. T.;
Ortiz, A. R.;
Serrano, L.;
Wade, R. C.

Publication type:

Article

A Genome-Scale DNA Repair RNAi Screen Identifies SPG48 as a Novel Gene Associated with Hereditary Spastic Paraplegia.

Published in:

PLoS Biology, 2010, v. 8, n. 6, p. 1, doi. 10.1371/journal.pbio.1000408

By:

Slabicki, Mikolaj;
Theis, Mirko;
Krastev, Dragomir B.;
Samsonov, Sergey;
Mundwiller, Emeline;
Junqueira, Magno;
Paszkowski-Rogacz, Maciej;
Teyra, Joan;
Heninger, Anne-Kristin;
Poser, Ina;
Prieur, Fabienne;
Truchetto, Jérémy;
Confavreux, Christian;
Marelli, Cécilia;
Durr, Alexandra;
Camdessanche, Jean Philippe;
Brice, Alexis;
Shevchenko, Andrej;
Pisabarro, M. Teresa;
Stevanin, Giovanni

Publication type:

Article

Nearest-neighbor amino acids of specificity-determining residues influence the activity of engineered Cre-type recombinases.

Published in:

Scientific Reports, 2020, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41598-020-70867-5

By:

Soni, Anjali;
Augsburg, Martina;
Buchholz, Frank;
Pisabarro, M. Teresa

Publication type:

Article

Nearest-neighbor amino acids of specificity-determining residues influence the activity of engineered Cre-type recombinases.

Published in:

Scientific Reports, 2020, p. N.PAG, doi. 10.1038/s41598-020-70867-5

By:

Soni, Anjali;
Augsburg, Martina;
Buchholz, Frank;
Pisabarro, M. Teresa

Publication type:

Article

Correction to: Standardization and Chemical Characterization of Intravenous Therapy in Adult Patients: A Step Further in Medication Safety.

Published in:

2021

By:

Manrique-Rodríguez, Silvia;
Heras-Hidalgo, Irene;
Pernia-López, M. Sagrario;
Herranz-Alonso, Ana;
del Río Pisabarro, M. Camino;
Suárez-Mier, M. Belén;
Cubero-Pérez, M. Antonia;
Viera-Rodríguez, Verónica;
Cortés-Rey, Noemí;
Lafuente-Cabrero, Elizabeth;
Martínez-Ortega, M. Carmen;
Bermejo-López, Esther;
Díez-Sáenz, Cristina;
López-Sánchez, Piedad;
Gaspar-Carreño, M. Luisa;
Achau-Muñoz, Rubén;
Márquez-Peiró, Juan F.;
Valera-Rubio, Marta;
Domingo-Chiva, Esther;
Aquerreta-González, Irene

Publication type:

Correction Notice

Standardization and Chemical Characterization of Intravenous Therapy in Adult Patients: A Step Further in Medication Safety.

Published in:

Drugs in R&D, 2021, v. 21, n. 1, p. 39, doi. 10.1007/s40268-020-00329-w

By:

Manrique-Rodríguez, Silvia;
Heras-Hidalgo, Irene;
Pernia-López, M. Sagrario;
Herranz-Alonso, Ana;
del Río Pisabarro, M. Camino;
Suárez-Mier, M. Belén;
Cubero-Pérez, M. Antonia;
Viera-Rodríguez, Verónica;
Cortés-Rey, Noemí;
Lafuente-Cabrero, Elizabeth;
Martínez-Ortega, M. Carmen;
Bermejo-López, Esther;
Díez-Sáenz, Cristina;
López-Sánchez, Piedad;
Gaspar-Carreño, M. Luisa;
Achau-Muñoz, Rubén;
Márquez-Peiró, Juan F.;
Valera-Rubio, Marta;
Domingo-Chiva, Esther;
Aquerreta-González, Irene

Publication type:

Article

A repressor sequence in the juxtamembrane domain of Flt-1 (VEGFR-1) constitutively inhibits vascular endothelial growth factor-dependent phosphatidylinositol 3'-kinase activation and endothelial cell migration.

Published in:

EMBO Journal, 2000, v. 19, n. 15, p. 4064, doi. 10.1093/emboj/19.15.4064

By:

Gille, Hendrik;
Kowalski, Joe;
Yu, Lanlan;
Chen, Helen;
Pisabarro, M. Teresa;
Davis-Smyth, Terri;
Ferrara, Napoleone

Publication type:

Article

Obligatory steps in protein folding and the conformational diversity of the transition state.

Published in:

Nature Structural Biology, 1998, v. 5, n. 8, p. 721, doi. 10.1038/1418

By:

Martinez, Jose C.;
Pisabarro, M. Teresa;
Serrano, Luis

Publication type:

Article

Sulfated hyaluronan attenuates inflammatory signaling pathways in macrophages involving induction of antioxidants.

Published in:

Proteomics, 2017, v. 17, n. 10, p. n/a, doi. 10.1002/pmic.201700082

By:

Jouy, Florent;
Lohmann, Nadine;
Wandel, Elke;
Ruiz‐Gómez, Gloria;
Pisabarro, M. Teresa;
Beck‐Sickinger, Annette G.;
Schnabelrauch, Matthias;
Möller, Stephanie;
Simon, Jan C.;
Kalkhof, Stefan;
Bergen, Martin;
Franz, Sandra

Publication type:

Article

Insights into the preferential order of strand exchange in the Cre/loxP recombinase system: impact of the DNA spacer flanking sequence and flexibility.

Published in:

Journal of Computer-Aided Molecular Design, 2015, v. 29, n. 3, p. 271, doi. 10.1007/s10822-014-9825-0

By:

Abi-Ghanem, Josephine;
Samsonov, Sergey;
Pisabarro, M.

Publication type:

Article

Docking glycosaminoglycans to proteins: analysis of solvent inclusion.

Published in:

Journal of Computer-Aided Molecular Design, 2011, v. 25, n. 5, p. 477, doi. 10.1007/s10822-011-9433-1

By:

Samsonov, Sergey;
Teyra, Joan;
Pisabarro, M.

Publication type:

Article

Mechanism of inhibition of human secretory phospholipase A2 by flavonoids: rationale for lead design.

Published in:

Journal of Computer-Aided Molecular Design, 2007, v. 21, n. 8, p. 473, doi. 10.1007/s10822-007-9129-8

By:

Lättig, Jens;
Böhl, Markus;
Fischer, Petra;
Tischer, Sandra;
Tietböhl, Claudia;
Menschikowski, Mario;
Gutzeit, Herwig;
Metz, Peter;
Pisabarro, M.

Publication type:

Article

The structural investigation of glycosaminoglycan binding to CXCL12 displays distinct interaction sites.

Published in:

Glycobiology, 2016, v. 26, n. 11, p. 1209, doi. 10.1093/glycob/cww059

By:

Panitz, Nydia;
Theisgen, Stephan;
Samsonov, Sergey A.;
Gehrcke, Jan-Philip;
Baumann, Lars;
Bellmann-Sickert, Kathrin;
Köhling, Sebastian;
Pisabarro, M. Teresa;
Rademann, Jörg;
Huster, Daniel;
Beck-Sickinger, Annette G.

Publication type:

Article

Computational analysis of interactions in structurally available protein-glycosaminoglycan complexes.

Published in:

Glycobiology, 2016, v. 26, n. 8, p. 850, doi. 10.1093/glycob/cww055

By:

Samsonov, Sergey A.;
Pisabarro, M. Teresa

Publication type:

Article

NMR characterization of the binding properties and conformation of glycosaminoglycans interacting with interleukin-10.

Published in:

Glycobiology, 2014, v. 24, n. 11, p. 1036, doi. 10.1093/glycob/cwu069

By:

Künze, Georg;
Gehrcke, Jan-Philip;
Pisabarro, M Teresa;
Huster, Daniel

Publication type:

Article

Investigation of lysine side chain interactions of interleukin-8 with heparin and other glycosaminoglycans studied by a methylation-NMR approach.

Published in:

Glycobiology, 2013, v. 23, n. 11, p. 1260, doi. 10.1093/glycob/cwt062

By:

Möbius, Kristin;
Nordsieck, Karoline;
Pichert, Annelie;
Samsonov, Sergey A;
Thomas, Lars;
Schiller, Jürgen;
Kalkhof, Stefan;
Teresa Pisabarro, M;
Beck-Sickinger, Annette G;
Huster, Daniel

Publication type:

Article

Characterization of the interaction of interleukin-8 with hyaluronan, chondroitin sulfate, dermatan sulfate and their sulfated derivatives by spectroscopy and molecular modeling.

Published in:

Glycobiology, 2012, v. 22, n. 1, p. 134, doi. 10.1093/glycob/cwr120

By:

Pichert, Annelie;
Samsonov, Sergey A;
Theisgen, Stephan;
Thomas, Lars;
Baumann, Lars;
Schiller, Jürgen;
Beck-Sickinger, Annette G;
Huster, Daniel;
Pisabarro, M Teresa

Publication type:

Article

Engineering spacer specificity of the Cre/loxP system.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 13, p. 8017, doi. 10.1093/nar/gkae481

By:

Hoersten, Jenna;
Ruiz-Gómez, Gloria;
Paszkowski-Rogacz, Maciej;
Gilioli, Giorgio;
Guillem-Gloria, Pedro Manuel;
Lansing, Felix;
Pisabarro, M Teresa;
Buchholz, Frank

Publication type:

Article

Pairing of single mutations yields obligate Cre-type site-specific recombinases.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 2, p. 1174, doi. 10.1093/nar/gkab1240

By:

Hoersten, Jenna;
Ruiz-Gómez, Gloria;
Lansing, Felix;
Rojo-Romanos, Teresa;
Schmitt, Lukas Theo;
Sonntag, Jan;
Pisabarro, M Teresa;
Buchholz, Frank

Publication type:

Article

Rational Structure-Based Rescaffolding Approach to De Novo Design of Interleukin 10 (IL-10) Receptor-1 Mimetics.

Published in:

PLoS ONE, 2016, v. 11, n. 4, p. 1, doi. 10.1371/journal.pone.0154046

By:

Ruiz-Gómez, Gloria;
Hawkins, John C.;
Philipp, Jenny;
Künze, Georg;
Wodtke, Robert;
Löser, Reik;
Fahmy, Karim;
Pisabarro, M. Teresa

Publication type:

Article

Glycosaminoglycan derivatives: promising candidates for the design of functional biomaterials.

Published in:

Journal of Materials Science: Materials in Medicine, 2015, v. 26, n. 9, p. 1, doi. 10.1007/s10856-015-5563-7

By:

Scharnweber, Dieter;
Hübner, Linda;
Rother, Sandra;
Hempel, Ute;
Anderegg, Ulf;
Samsonov, Sergey A.;
Pisabarro, M. Teresa;
Hofbauer, Lorenz;
Schnabelrauch, Matthias;
Franz, Sandra;
Simon, Jan;
Hintze, Vera

Publication type:

Article

Dual Action of Sulfated Hyaluronan on Angiogenic Processes in Relation to Vascular Endothelial Growth Factor-A.

Published in:

Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-54211-0

By:

Koehler, Linda;
Ruiz-Gómez, Gloria;
Balamurugan, Kanagasabai;
Rother, Sandra;
Freyse, Joanna;
Möller, Stephanie;
Schnabelrauch, Matthias;
Köhling, Sebastian;
Djordjevic, Snezana;
Scharnweber, Dieter;
Rademann, Jörg;
Pisabarro, M. Teresa;
Hintze, Vera

Publication type:

Article

Glycosaminoglycans influence enzyme activity of MMP2 and MMP2/TIMP3 complex formation - Insights at cellular and molecular level.

Published in:

Scientific Reports, 2019, v. 9, n. 1, p. 1, doi. 10.1038/s41598-019-41355-2

By:

Ruiz-Gómez, Gloria;
Vogel, Sarah;
Möller, Stephanie;
Pisabarro, M. Teresa;
Hempel, Ute

Publication type:

Article

Multipose Binding in Molecular Docking.

Published in:

International Journal of Molecular Sciences, 2014, v. 15, n. 2, p. 2622, doi. 10.3390/ijms15022622

By:

Atkovska, Kalina;
Samsonov, Sergey A.;
Paszkowski-Rogacz, Maciej;
Pisabarro, M. Teresa

Publication type:

Article

PhenoFam-gene set enrichment analysis throughprotein structural information.

Published in:

BMC Bioinformatics, 2010, v. 11, p. 254, doi. 10.1186/1471-2105-11-254

By:

Paszkowski-Rogacz, Maciej;
Slabicki, Mikolaj;
Pisabarro, M Teresa;
Buchholz, Frank

Publication type:

Article

SCOWLP classification: Structural comparison and analysis of protein binding regions.

Published in:

BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-9

By:

Teyra, Joan;
Paszkowski-Rogacz, Maciej;
Anders, Gerd;
Pisabarro, M. Teresa

Publication type:

Article

Author Correction: Sulfated glycosaminoglycans inhibit transglutaminase 2 by stabilizing its closed conformation.

Published in:

2022

By:

Müller, Claudia Damaris;
Ruiz-Gómez, Gloria;
Cazzonelli, Sophie;
Möller, Stephanie;
Wodtke, Robert;
Löser, Reik;
Freyse, Joanna;
Dürig, Jan-Niklas;
Rademann, Jörg;
Hempel, Ute;
Pisabarro, M. Teresa;
Vogel, Sarah

Publication type:

Correction Notice

Sulfated glycosaminoglycans inhibit transglutaminase 2 by stabilizing its closed conformation.

Published in:

Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-21032-7

By:

Müller, Claudia Damaris;
Ruiz-Gómez, Gloria;
Cazzonelli, Sophie;
Möller, Stephanie;
Wodtke, Robert;
Löser, Reik;
Freyse, Joanna;
Dürig, Jan-Niklas;
Rademann, Jörg;
Hempel, Ute;
Pisabarro, M. Teresa;
Vogel, Sarah

Publication type:

Article

Sulfated glycosaminoglycans inhibit transglutaminase 2 by stabilizing its closed conformation.

Published in:

Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-17113-2

By:

Müller, Claudia Damaris;
Ruiz-Gómez, Gloria;
Cazzonelli, Sophie;
Möller, Stephanie;
Wodtke, Robert;
Löser, Reik;
Freyse, Joanna;
Dürig, Jan-Niklas;
Rademann, Jörg;
Hempel, Ute;
Pisabarro, M. Teresa;
Vogel, Sarah

Publication type:

Article

Residue 75 of Interleukin-8 is Crucial for its Interactions with Glycosaminoglycans.

Published in:

ChemBioChem, 2012, v. 13, n. 17, p. 2558, doi. 10.1002/cbic.201200467

By:

Nordsieck, Karoline;
Pichert, Annelie;
Samsonov, Sergey A.;
Thomas, Lars;
Berger, Christian;
Pisabarro, M. Teresa;
Huster, Daniel;
Beck-Sickinger, Annette G.

Publication type:

Article

Engineering of a target site-specific recombinase by a combined evolution- and structure-guided approach.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 4, p. 2394, doi. 10.1093/nar/gks1308

By:

Abi-Ghanem, Josephine;
Chusainow, Janet;
Karimova, Madina;
Spiegel, Christopher;
Hofmann-Sieber, Helga;
Hauber, Joachim;
Buchholz, Frank;
Pisabarro, M. Teresa

Publication type:

Article

Directed evolution of a recombinase that excises the provirus of most HIV-1 primary isolates with high specificity.

Published in:

Nature Biotechnology, 2016, v. 34, n. 4, p. 401, doi. 10.1038/nbt.3467

By:

Karpinski, Janet;
Hauber, Ilona;
Chemnitz, Jan;
Schäfer, Carola;
Paszkowski-Rogacz, Maciej;
Chakraborty, Deboyoti;
Beschorner, Niklas;
Hofmann-Sieber, Helga;
Lange, Ulrike C;
Grundhoff, Adam;
Hackmann, Karl;
Schrock, Evelin;
Abi-Ghanem, Josephine;
Pisabarro, M Teresa;
Surendranath, Vineeth;
Schambach, Axel;
Lindner, Christoph;
van Lunzen, Jan;
Hauber, Joachim;
Buchholz, Frank

Publication type:

Article

Identification of CCR2-binding features in Cytl1 by a CCL2-like chemokine model.

Published in:

Proteins, 2011, v. 79, n. 4, p. 1277, doi. 10.1002/prot.22963

By:

Tomczak, Aurelie;
Teresa Pisabarro, M.

Publication type:

Article

Studies on the inference of protein binding regions across fold space based on structural similarities.

Published in:

Proteins, 2011, v. 79, n. 2, p. 499, doi. 10.1002/prot.22897

By:

Teyra, Joan;
Hawkins, John;
Zhu, Hongbo;
Pisabarro, M. Teresa

Publication type:

Article

Comparative profiling identifies C13orf3 as a component of the Ska complex required for mammalian cell division.

Published in:

EMBO Journal, 2009, v. 28, n. 10, p. 1453, doi. 10.1038/emboj.2009.114

By:

Theis, Mirko;
Slabicki, Mikolaj;
Junqueira, Magno;
Paszkowski-Rogacz, Maciej;
Sontheimer, Jana;
Kittler, Ralf;
Heninger, Anne-Kristine;
Glatter, Timo;
Kruusmaa, Kristi;
Poser, Ina;
Hyman, Anthony A.;
Pisabarro, M. Teresa;
Gstaiger, Matthias;
Aebersold, Rudolf;
Shevchenko, Andrej;
Buchholz, Frank

Publication type:

Article

Structural insights into the modulation of PDGF/PDGFR-β complexation by hyaluronan derivatives.

Published in:

Biological Chemistry, 2021, v. 402, n. 11, p. 1441, doi. 10.1515/hsz-2021-0173

By:

Balamurugan, Kanagasabai;
Koehler, Linda;
Dürig, Jan-Niklas;
Hempel, Ute;
Rademann, Jörg;
Hintze, Vera;
Pisabarro, M. Teresa

Publication type:

Article