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Halophytes and heavy metals: A multi‐omics approach to understand the role of gene and genome duplication in the abiotic stress tolerance of Cakile maritima.
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- American Journal of Botany, 2024, v. 111, n. 8, p. 1, doi. 10.1002/ajb2.16310
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The occurrence, inheritance, and segregation of complex genomic structural variation in synthetic Brassica napus.
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- Crop Journal (2095-5421), 2024, v. 12, n. 2, p. 515, doi. 10.1016/j.cj.2024.01.002
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Gene expression bias between the subgenomes of allopolyploid hybrids is an emergent property of the kinetics of expression.
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- PLoS Computational Biology, 2024, v. 20, n. 1, p. 1, doi. 10.1371/journal.pcbi.1011803
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Genomic data resolve phylogenetic relationships of Australian mat-rushes, Lomandra (Asparagaceae: Lomandroideae).
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- Botanical Journal of the Linnean Society, 2024, v. 204, n. 1, p. 1, doi. 10.1093/botlinnean/boad034
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Dosage-sensitivity shapes how genes transcriptionally respond to allopolyploidy and homoeologous exchange in resynthesized Brassica napus.
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- Genetics, 2023, v. 225, n. 1, p. 1, doi. 10.1093/genetics/iyad114
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Building a feral future: Open questions in crop ferality.
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- Plants, People, Planet, 2023, v. 5, n. 5, p. 635, doi. 10.1002/ppp3.10367
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Patterns, mechanisms, and consequences of homoeologous exchange in allopolyploid angiosperms: a genomic and epigenomic perspective.
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- New Phytologist, 2023, v. 238, n. 6, p. 2284, doi. 10.1111/nph.18927
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Mangroves and multiplications: Influence of genome duplications on salt tolerance.
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- Molecular Ecology, 2023, v. 32, n. 2, p. 275, doi. 10.1111/mec.16796
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Phylotranscriptomic Analyses of Mycoheterotrophic Monocots Show a Continuum of Convergent Evolutionary Changes in Expressed Nuclear Genes From Three Independent Nonphotosynthetic Lineages.
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- Genome Biology & Evolution, 2023, v. 15, n. 1, p. 1, doi. 10.1093/gbe/evac183
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Phylogenomic resolution of order- and family-level monocot relationships using 602 single-copy nuclear genes and 1375 BUSCO genes.
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- Frontiers in Plant Science, 2022, v. 13, p. 1, doi. 10.3389/fpls.2022.876779
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Prospects of Feral Crop De Novo Redomestication.
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- Plant & Cell Physiology, 2022, v. 63, n. 11, p. 1641, doi. 10.1093/pcp/pcac072
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final piece of the Triangle of U: Evolution of the tetraploid Brassica carinata genome.
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- Plant Cell, 2022, v. 34, n. 11, p. 4143, doi. 10.1093/plcell/koac249
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Convergent evolution of polyploid genomes from across the eukaryotic tree of life.
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- G3: Genes | Genomes | Genetics, 2022, v. 12, n. 6, p. 1, doi. 10.1093/g3journal/jkac094
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Modelling of gene loss propensity in the pangenomes of three Brassica species suggests different mechanisms between polyploids and diploids.
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- Plant Biotechnology Journal, 2021, v. 19, n. 12, p. 2488, doi. 10.1111/pbi.13674
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The Evolutionary History of Wild, Domesticated, and Feral Brassica oleracea (Brassicaceae).
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- Molecular Biology & Evolution, 2021, v. 38, n. 10, p. 4419, doi. 10.1093/molbev/msab183
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Brassica rapa Domestication: Untangling Wild and Feral Forms and Convergence of Crop Morphotypes.
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- Molecular Biology & Evolution, 2021, v. 38, n. 8, p. 3358, doi. 10.1093/molbev/msab108
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The best of both worlds: Combining lineage‐specific and universal bait sets in target‐enrichment hybridization reactions.
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- Applications in Plant Sciences, 2021, v. 9, n. 7, p. 1, doi. 10.1002/aps3.11438
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Comparative phylogenetics of repetitive elements in a diverse order of flowering plants (Brassicales).
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- G3: Genes | Genomes | Genetics, 2021, v. 11, n. 7, p. 1, doi. 10.1093/g3journal/jkab140
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Genetic variation, environment and demography intersect to shape Arabidopsis defense metabolite variation across Europe.
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- eLife, 2021, p. 1, doi. 10.7554/eLife.67784
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Replaying the evolutionary tape to investigate subgenome dominance in allopolyploid Brassica napus.
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- New Phytologist, 2021, v. 230, n. 1, p. 354, doi. 10.1111/nph.17137
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Genes derived from ancient polyploidy have higher genetic diversity and are associated with domestication in Brassica rapa.
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- New Phytologist, 2021, v. 230, n. 1, p. 372, doi. 10.1111/nph.17194
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The Molecular Basis of Kale Domestication: Transcriptional Profiling of Developing Leaves Provides New Insights Into the Evolution of a Brassica oleracea Vegetative Morphotype.
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- Frontiers in Plant Science, 2021, v. 11, p. N.PAG, doi. 10.3389/fpls.2021.637115
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Chromosome inheritance and meiotic stability in allopolyploid Brassica napus.
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- G3: Genes | Genomes | Genetics, 2021, v. 11, n. 2, p. 1, doi. 10.1093/g3journal/jkaa011
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Phylogeny and multiple independent whole‐genome duplication events in the Brassicales.
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- American Journal of Botany, 2020, v. 107, n. 8, p. 1148, doi. 10.1002/ajb2.1514
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Genomic Origin and Diversification of the Glucosinolate MAM Locus.
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- Frontiers in Plant Science, 2020, v. 11, p. 1, doi. 10.3389/fpls.2020.00711
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Affordable remote monitoring of plant growth in facilities using Raspberry Pi computers.
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- Applications in Plant Sciences, 2019, v. 7, n. 8, p. N.PAG, doi. 10.1002/aps3.11280
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Functional characterization of SMN evolution in mouse models of SMA.
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- Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-45822-8
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Transcriptome and organellar sequencing highlights the complex origin and diversification of allotetraploid Brassica napus.
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- Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-10757-1
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Usability of reference-free transcriptome assemblies for detection of differential expression: a case study on Aethionema arabicum dimorphic seeds.
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- BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-5452-4
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The renaissance of comparative biochemistry.
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- American Journal of Botany, 2019, v. 106, n. 1, p. 3, doi. 10.1002/ajb2.1216
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Monocot plastid phylogenomics, timeline, net rates of species diversification, the power of multi‐gene analyses, and a functional model for the origin of monocots.
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- American Journal of Botany, 2018, v. 105, n. 11, p. 1888, doi. 10.1002/ajb2.1178
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Transcriptome‐wide comparison of selenium hyperaccumulator and nonaccumulator Stanleya species provides new insight into key processes mediating the hyperaccumulation syndrome.
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- Plant Biotechnology Journal, 2018, v. 16, n. 9, p. 1582, doi. 10.1111/pbi.12897
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- Article
Homoeologous exchange is a major cause of gene presence/absence variation in the amphidiploid Brassica napus.
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- Plant Biotechnology Journal, 2018, v. 16, n. 7, p. 1265, doi. 10.1111/pbi.12867
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Genome-wide nucleotide diversity and associations with geography, ploidy level and glucosinolate profiles in <italic>Aethionema arabicum</italic> (Brassicaceae).
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- Plant Systematics & Evolution, 2018, v. 304, n. 5, p. 619, doi. 10.1007/s00606-018-1494-3
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Phylotranscriptomic analysis and genome evolution of the Cypripedioideae (Orchidaceae).
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- American Journal of Botany, 2018, v. 105, n. 4, p. 631, doi. 10.1002/ajb2.1047
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Preferential retention of genes from one parental genome after polyploidy illustrates the nature and scope of the genomic conflicts induced by hybridization.
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- PLoS Genetics, 2018, v. 14, n. 3, p. 1, doi. 10.1371/journal.pgen.1007267
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Brassicales phylogeny inferred from 72 plastid genes: A reanalysis of the phylogenetic localization of two paleopolyploid events and origin of novel chemical defenses.
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- American Journal of Botany, 2018, v. 105, n. 3, p. 463, doi. 10.1002/ajb2.1040
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- Article
Patterns of Population Variation in Two Paleopolyploid Eudicot Lineages Suggest That Dosage-Based Selection on Homeologs Is Long-Lived.
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- Genome Biology & Evolution, 2018, v. 10, n. 3, p. 999, doi. 10.1093/gbe/evy061
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Gα and regulator of G-protein signaling (RGS) protein pairs maintain functional compatibility and conserved interaction interfaces throughout evolution despite frequent loss of RGS proteins in plants.
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- New Phytologist, 2017, v. 216, n. 2, p. 562, doi. 10.1111/nph.14180
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Subgenome Dominance in an Interspecific Hybrid, Synthetic Allopolyploid, and a 140-Year-Old Naturally Established Neo-Allopolyploid Monkeyflower.
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- Plant Cell, 2017, v. 29, n. 9, p. 2150, doi. 10.1105/tpc.17.00010
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Molecular Resources from Transcriptomes in the Brassicaceae Family.
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- Frontiers in Plant Science, 2017, p. 1, doi. 10.3389/fpls.2017.01488
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Anatolian origins and diversification of Aethionema, the sister lineage of the core Brassicaceae.
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- American Journal of Botany, 2017, v. 104, n. 7, p. 1042, doi. 10.3732/ajb.1700091
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Genomic inferences of domestication events are corroborated by written records in Brassica rapa.
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- Molecular Ecology, 2017, v. 26, n. 13, p. 3373, doi. 10.1111/mec.14131
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Insights into the Evolution of Hydroxyproline-Rich Glycoproteins from 1000 Plant Transcriptomes.
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- Plant Physiology, 2017, v. 174, n. 2, p. 904, doi. 10.1104/pp.17.00295
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Population Structure and Phylogenetic Relationships in a Diverse Panel of Brassica rapa L.
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- Frontiers in Plant Science, 2017, v. 8, p. 1, doi. 10.3389/fpls.2017.00321
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The pangenome of an agronomically important crop plant Brassica oleracea.
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- Nature Communications, 2016, v. 7, n. 11, p. 13390, doi. 10.1038/ncomms13390
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Timing of rapid diversification and convergent origins of active pollination within Agavoideae (Asparagaceae).
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- American Journal of Botany, 2016, v. 103, n. 10, p. 1717, doi. 10.3732/ajb.1600198
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Retrotransposon Proliferation Coincident with the Evolution of Dioecy in Asparagus.
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- G3: Genes | Genomes | Genetics, 2016, v. 6, n. 9, p. 2679, doi. 10.1534/g3.116.030239
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Spreading Winge and flying high: The evolutionary importance of polyploidy after a century of study.
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- American Journal of Botany, 2016, v. 103, n. 7, p. 1139, doi. 10.3732/ajb.1600272
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Evolutionary relationships in Panicoid grasses based on plastome phylogenomics (Panicoideae; Poaceae).
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- BMC Plant Biology, 2016, v. 16, p. 1, doi. 10.1186/s12870-016-0823-3
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- Article