Found: 16

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  • Cohort profile: the Turin prostate cancer prognostication (TPCP) cohort.

    Published in:
    Frontiers in Oncology, 2023, p. 1, doi. 10.3389/fonc.2023.1242639
    By:
    • Destefanis, Nicolas;
    • Fiano, Valentina;
    • Milani, Lorenzo;
    • Vasapolli, Paolo;
    • Fiorentino, Michelangelo;
    • Giunchi, Francesca;
    • Lianas, Luca;
    • Del Rio, Mauro;
    • Frexia, Francesca;
    • Pireddu, Luca;
    • Molinaro, Luca;
    • Cassoni, Paola;
    • Giulio Papotti, Mauro;
    • Gontero, Paolo;
    • Calleris, Giorgio;
    • Oderda, Marco;
    • Ricardi, Umberto;
    • Iorio, Giuseppe Carlo;
    • Fariselli, Piero;
    • Isaevska, Elena
    Publication type:
    Article

  • MMsINC: a large-scale chemoinformatics database.

    Published in:
    Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D284, doi. 10.1093/nar/gkn727
    By:
    • Masciocchi, Joel;
    • Frau, Gianfranco;
    • Fanton, Marco;
    • Sturlese, Mattia;
    • Floris, Matteo;
    • Pireddu, Luca;
    • Palla, Piergiorgio;
    • Cedrati, Fabian;
    • Rodriguez-Tomé, Patricia;
    • Moro, Stefano
    Publication type:
    Article

  • ISA API: An open platform for interoperable life science experimental metadata.

    Published in:
    GigaScience, 2021, v. 10, n. 9, p. 1, doi. 10.1093/gigascience/giab060
    By:
    • Johnson, David;
    • Batista, Dominique;
    • Cochrane, Keeva;
    • Davey, Robert P;
    • Etuk, Anthony;
    • Gonzalez-Beltran, Alejandra;
    • Haug, Kenneth;
    • Izzo, Massimiliano;
    • Larralde, Martin;
    • Lawson, Thomas N;
    • Minotto, Alice;
    • Moreno, Pablo;
    • Nainala, Venkata Chandrasekhar;
    • O'Donovan, Claire;
    • Pireddu, Luca;
    • Roger, Pierrick;
    • Shaw, Felix;
    • Steinbeck, Christoph;
    • Weber, Ralf J M;
    • Sansone, Susanna-Assunta
    Publication type:
    Article

  • Recommendations on e-infrastructures for next-generation sequencing.

    Published in:
    GigaScience, 2016, v. 5, p. 1, doi. 10.1186/s13742-016-0132-7
    By:
    • Spjuth, Ola;
    • Bongcam-Rudloff, Erik;
    • Dahlberg, Johan;
    • Dahlö, Martin;
    • Kallio, Aleksi;
    • Pireddu, Luca;
    • Vezzi, Francesco;
    • Korpelainen, Eija
    Publication type:
    Article

  • Privacy risks of whole-slide image sharing in digital pathology.

    Published in:
    Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-37991-y
    By:
    • Holub, Petr;
    • Müller, Heimo;
    • Bíl, Tomáš;
    • Pireddu, Luca;
    • Plass, Markus;
    • Prasser, Fabian;
    • Schlünder, Irene;
    • Zatloukal, Kurt;
    • Nenutil, Rudolf;
    • Brázdil, Tomáš
    Publication type:
    Article

  • Support Vector Machine (SVM) as Alternative Tool to Assign Acute Aquatic Toxicity Warning Labels to Chemicals.

    Published in:
    Molecular Informatics, 2010, v. 29, n. 1/2, p. 51, doi. 10.1002/minf.200900005
    By:
    • Michielan, Lisa;
    • Pireddu, Luca;
    • Floris, Matteo;
    • Moro, Stefano
    Publication type:
    Article

  • Fingerprint-based detection of acute aquatic toxicity.

    Published in:
    2010
    By:
    • Pireddu, Luca;
    • Michielan, L.;
    • Floris, M.;
    • Rodriguez-Tomé, P.;
    • Moro, S.
    Publication type:
    Abstract

  • The Path-A metabolic pathway prediction web server.

    Published in:
    Nucleic Acids Research, 2006, v. 34, n. 11, p. w714, doi. 10.1093/nar/gkl228
    By:
    • Pireddu, Luca;
    • Szafron, Duane;
    • Lu, Paul;
    • Greiner, Russell
    Publication type:
    Article

  • Recording provenance of workflow runs with RO-Crate.

    Published in:
    PLoS ONE, 2024, v. 19, n. 9, p. 1, doi. 10.1371/journal.pone.0309210
    By:
    • Leo, Simone;
    • Crusoe, Michael R.;
    • Rodríguez-Navas, Laura;
    • Sirvent, Raül;
    • Kanitz, Alexander;
    • De Geest, Paul;
    • Wittner, Rudolf;
    • Pireddu, Luca;
    • Garijo, Daniel;
    • Fernández, José M.;
    • Colonnelli, Iacopo;
    • Gallo, Matej;
    • Ohta, Tazro;
    • Suetake, Hirotaka;
    • Capella-Gutierrez, Salvador;
    • de Wit, Renske;
    • Kinoshita, Bruno P.;
    • Soiland-Reyes, Stian
    Publication type:
    Article

  • Experiences with workflows for automating data-intensive bioinformatics.

    Published in:
    Biology Direct, 2015, v. 10, n. 1, p. 43, doi. 10.1186/s13062-015-0071-8
    By:
    • Spjuth, Ola;
    • Bongcam-Rudloff, Erik;
    • Carrasco Hernández, Guillermo;
    • Forer, Lukas;
    • Giovacchini, Mario;
    • Guimera, Roman Valls;
    • Kallio, Aleksi;
    • Korpelainen, Eija;
    • Kańduła, Maciej M.;
    • Krachunov, Milko;
    • Kreil, David P.;
    • Kulev, Ognyan;
    • Łabaj, Paweł P.;
    • Lampa, Samuel;
    • Pireddu, Luca;
    • Schönherr, Sebastian;
    • Siretskiy, Alexey;
    • Vassilev, Dimitar
    Publication type:
    Article

  • Experiences with workflows for automating data-intensive bioinformatics.

    Published in:
    Biology Direct, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s13062-015-0071-8
    By:
    • Spjuth, Ola;
    • Bongcam-Rudloff, Erik;
    • Carrasco Hernández, Guillermo;
    • Forer, Lukas;
    • Giovacchini, Mario;
    • Guimera, Roman Valls;
    • Kallio, Aleksi;
    • Korpelainen, Eija;
    • Kańduła, Maciej M.;
    • Krachunov, Milko;
    • Kreil, David P.;
    • Kulev, Ognyan;
    • Łabaj, Paweł P.;
    • Lampa, Samuel;
    • Pireddu, Luca;
    • Schönherr, Sebastian;
    • Siretskiy, Alexey;
    • Vassilev, Dimitar
    Publication type:
    Article

  • Interoperable and scalable data analysis with microservices: applications in metabolomics.

    Published in:
    Bioinformatics, 2019, v. 35, n. 19, p. 3752, doi. 10.1093/bioinformatics/btz160
    By:
    • Khoonsari, Payam Emami;
    • Moreno, Pablo;
    • Bergmann, Sven;
    • Burman, Joachim;
    • Capuccini, Marco;
    • Carone, Matteo;
    • Cascante, Marta;
    • Atauri, Pedro de;
    • Foguet, Carles;
    • Gonzalez-Beltran, Alejandra N;
    • Hankemeier, Thomas;
    • Haug, Kenneth;
    • He, Sijin;
    • Herman, Stephanie;
    • Johnson, David;
    • Kale, Namrata;
    • Larsson, Anders;
    • Neumann, Steffen;
    • Peters, Kristian;
    • Pireddu, Luca
    Publication type:
    Article

  • wft4galaxy: a workflow testing tool for galaxy.

    Published in:
    Bioinformatics, 2017, v. 33, n. 23, p. 3805, doi. 10.1093/bioinformatics/btx461
    By:
    • Piras, Marco Enrico;
    • Pireddu, Luca;
    • Zanetti, Gianluigi
    Publication type:
    Article

  • BioBlend.objects: metacomputing with Galaxy.

    Published in:
    Bioinformatics, 2014, v. 30, n. 19, p. 2816, doi. 10.1093/bioinformatics/btu386
    By:
    • Leo, Simone;
    • Pireddu, Luca;
    • Cuccuru, Gianmauro;
    • Lianas, Luca;
    • Soranzo, Nicola;
    • Afgan, Enis;
    • Zanetti, Gianluigi
    Publication type:
    Article

  • SeqPig: simple and scalable scripting for large sequencing data sets in Hadoop.

    Published in:
    Bioinformatics, 2014, v. 30, n. 1, p. 119, doi. 10.1093/bioinformatics/btt601
    By:
    • Schumacher, André;
    • Pireddu, Luca;
    • Niemenmaa, Matti;
    • Kallio, Aleksi;
    • Korpelainen, Eija;
    • Zanetti, Gianluigi;
    • Heljanko, Keijo
    Publication type:
    Article

  • SEAL: a distributed short read mapping and duplicate removal tool.

    Published in:
    Bioinformatics, 2011, v. 27, n. 15, p. 2159, doi. 10.1093/bioinformatics/btr325
    By:
    • Pireddu, Luca;
    • Leo, Simone;
    • Zanetti, Gianluigi
    Publication type:
    Article