Works by Pipas, James M.

Results: 23

Inside Back Cover: Artifact-Free Quantification and Sequencing of Rare Recombinant Viruses by Using Drop-Based Microfluidics (ChemBioChem 15/2015).

Published in:

2015

By:

Tao, Ye;
Rotem, Assaf;
Zhang, Huidan;
Cockrell, Shelley K.;
Koehler, Stephan A.;
Chang, Connie B.;
Ung, Lloyd W.;
Cantalupo, Paul G.;
Ren, Yukun;
Lin, Jeffrey S.;
Feldman, Andrew B.;
Wobus, Christiane E.;
Pipas, James M.;
Weitz, David A.

Publication type:

Other

Artifact-Free Quantification and Sequencing of Rare Recombinant Viruses by Using Drop-Based Microfluidics.

Published in:

ChemBioChem, 2015, v. 16, n. 15, p. 2167, doi. 10.1002/cbic.201500384

By:

Tao, Ye;
Rotem, Assaf;
Zhang, Huidan;
Cockrell, Shelley K.;
Koehler, Stephan A.;
Chang, Connie B.;
Ung, Lloyd W.;
Cantalupo, Paul G.;
Ren, Yukun;
Lin, Jeffrey S.;
Feldman, Andrew B.;
Wobus, Christiane E.;
Pipas, James M.;
Weitz, David A.

Publication type:

Article

SV40-encoded microRNAs regulate viral gene expression and reduce susceptibility to cytotoxic T cells.

Published in:

Nature, 2005, v. 435, n. 7042, p. 682, doi. 10.1038/nature03576

By:

Sullivan, Christopher S.;
Grundhoff, Adam T.;
Tevethia, Satvir;
Pipas, James M.;
Ganem, Don

Publication type:

Article

The pollen virome of wild plants and its association with variation in floral traits and land use.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-28143-9

By:

Fetters, Andrea M.;
Cantalupo, Paul G.;
Wei, Na;
Robles, Maria Teresa Sáenz;
Stanley, Amber;
Stephens, Jessica D.;
Pipas, James M.;
Ashman, Tia-Lynn

Publication type:

Article

Stability and detection of nucleic acid from viruses and hosts in controlled mosquito blood feeds.

Published in:

PLoS ONE, 2020, v. 15, n. 6, p. 1, doi. 10.1371/journal.pone.0231061

By:

Drummond, Coyne;
Gebhardt, Mary E.;
Sáenz Robles, Maria Teresa;
Carpi, Giovanna;
Hoyer, Isaiah;
Pastusiak, Andrzej;
Reddy, Michael R.;
Norris, Douglas E.;
Pipas, James M.;
Jackson, Ethan K.

Publication type:

Article

Analysis of viruses present in urine from patients with interstitial cystitis.

Published in:

Virus Genes, 2020, v. 56, n. 4, p. 430, doi. 10.1007/s11262-020-01767-z

By:

Robles, Maria Teresa Sáenz;
Cantalupo, Paul G.;
Duray, Alexis M.;
Freeland, Melissa;
Murkowski, Michelle;
van Bokhoven, Adrie;
Stephens-Shields, Alisa J.;
Pipas, James M.;
Imperiale, Michael J.

Publication type:

Article

Human polyomavirus BKV infection of endothelial cells results in interferon pathway induction and persistence.

Published in:

PLoS Pathogens, 2019, v. 15, n. 01, p. 1, doi. 10.1371/journal.ppat.1007505

By:

An, Ping;
Sáenz Robles, Maria Teresa;
Duray, Alexis M.;
Cantalupo, Paul G.;
Pipas, James M.

Publication type:

Article

SV40 large tumor antigen (T antigen): database of mutants.

Published in:

Nucleic Acids Research, 1998, v. 26, n. 1, p. 297

By:

Robinson, Clifford G.;
Pipas, James M.

Publication type:

Article

Database of Mutations That Alter the Large Tumor Antigen of Simian Virus 40.

Published in:

Nucleic Acids Research, 1996, v. 24, n. 1, p. 125, doi. 10.1093/nar/24.1.125

By:

Kierstead, Timothy D.;
Pipas, James M.

Publication type:

Article

Predicting rna secondary interactions from primary sequence.

Published in:

International Journal of Quantum Chemistry, 1975, v. 9, p. 129, doi. 10.1002/qua.560090711

By:

McMahon, James E.;
Pipas, James M.

Publication type:

Article

A Retinoblastoma Allele That Is Mutated at Its Common E2F Interaction Site Inhibits Cell Proliferation in Gene-Targeted Mice.

Published in:

Molecular & Cellular Biology, 2014, v. 34, n. 11, p. 2029, doi. 10.1128/MCB.01589-13

By:

Cecchini, Matthew J.;
Thwaites, Michael J.;
Talluri, Srikanth;
MacDonald, James I.;
Passos, Daniel T.;
Chong, Jean-Leon;
Cantalupo, Paul;
Stafford, Paul M.;
Sáenz-Robles, M. Teresa;
Francis, Sarah M.;
Pipas, James M.;
Leone, Gustavo;
Welch, Ian;
Dick, Frederick A.

Publication type:

Article

SummonChimera Infers Integrated Viral Genomes with Nucleotide Precision from NGS data.

Published in:

BMC Bioinformatics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/s12859-014-0348-4

By:

Katz, Joshua P.;
Pipas, James M.

Publication type:

Article

Whole-Genome Sequencing of a Single Viral Species from a Highly Heterogeneous Sample.

Published in:

Angewandte Chemie, 2015, v. 127, n. 47, p. 14191, doi. 10.1002/ange.201507047

By:

Han, Hee‐Sun;
Cantalupo, Paul G.;
Rotem, Assaf;
Cockrell, Shelley K.;
Carbonnaux, Martial;
Pipas, James M.;
Weitz, David A.

Publication type:

Article

A metagenomic analysis of the phase 2 Anopheles gambiae 1000 genomes dataset reveals a wide diversity of cobionts associated with field collected mosquitoes.

Published in:

Communications Biology, 2024, v. 7, n. 1, p. 1, doi. 10.1038/s42003-024-06337-9

By:

Pastusiak, Andrzej;
Reddy, Michael R.;
Chen, Xiaoji;
Hoyer, Isaiah;
Dorman, Jack;
Gebhardt, Mary E.;
Carpi, Giovanna;
Norris, Douglas E.;
Pipas, James M.;
Jackson, Ethan K.

Publication type:

Article

Recurrent integration of human papillomavirus genomes at transcriptional regulatory hubs.

Published in:

NPJ Genomic Medicine, 2021, v. 6, n. 1, p. 1, doi. 10.1038/s41525-021-00264-y

By:

Warburton, Alix;
Markowitz, Tovah E.;
Katz, Joshua P.;
Pipas, James M.;
McBride, Alison A.

Publication type:

Article

Transforming functions of Simian Virus 40.

Published in:

Oncogene, 2001, v. 20, n. 54, p. 7899, doi. 10.1038/sj.onc.1204936

By:

Sáenz-Robles, M Teresa;
Sullivan, Chris S;
Pipas, James M

Publication type:

Article

Identification of a Novel Polyomavirus in a Pancreatic Transplant Recipient With Retinal Blindness and Vasculitic Myopathy.

Published in:

2014

By:

Mishra, Nischay;
Pereira, Marcus;
Rhodes, Roy H.;
An, Ping;
Pipas, James M.;
Jain, Komal;
Kapoor, Amit;
Briese, Thomas;
Faust, Phyllis L.;
Lipkin, W. Ian

Publication type:

Case Study

Redeployment of Myc and E2f1-3 drives Rb-deficient cell cycles.

Published in:

Nature Cell Biology, 2015, v. 17, n. 8, p. 1036, doi. 10.1038/ncb3210

By:

Liu, Huayang;
Tang, Xing;
Srivastava, Arunima;
Pécot, Thierry;
Daniel, Piotr;
Hemmelgarn, Benjamin;
Reyes, Stephan;
Fackler, Nicholas;
Bajwa, Amneet;
Kladney, Raleigh;
Koivisto, Christopher;
Chen, Zhong;
Wang, Qianben;
Huang, Kun;
Machiraju, Raghu;
Sáenz-Robles, Maria Teresa;
Cantalupo, Paul;
Pipas, James M.;
Leone, Gustavo

Publication type:

Article

The Retinoblastoma Tumor Suppressor Regulates a Xenobiotic Detoxification Pathway.

Published in:

PLoS ONE, 2011, v. 6, n. 10, p. 1, doi. 10.1371/journal.pone.0026019

By:

Robles, Maria Teresa Saénz;
Case, Ashley;
Chong, Jean-Leon;
Leone, Gustavo;
Pipas, James M.

Publication type:

Article

The Hsp40 Molecular Chaperone Ydj1p, Along With the Protein Kinase C Pathway, Affects Cell-Wall Integrity in the Yeast Saccharomyces cerevisiae.

Published in:

Genetics, 2007, v. 175, n. 4, p. 1649, doi. 10.1534/genetics.106.066274

By:

Wright, Christine M.;
Fewell, Sheara W.;
Sullivan, Mara L.;
Pipas, James M.;
Watkins, Simon C.;
Brodsky, Jeffrey L.

Publication type:

Article

Whole-Genome Sequencing of a Single Viral Species from a Highly Heterogeneous Sample.

Published in:

Angewandte Chemie International Edition, 2015, v. 54, n. 47, p. 13985, doi. 10.1002/anie.201507047

By:

Han, Hee‐Sun;
Cantalupo, Paul G.;
Rotem, Assaf;
Cockrell, Shelley K.;
Carbonnaux, Martial;
Pipas, James M.;
Weitz, David A.

Publication type:

Article

SV40 large T antigen targets multiple cellular pathways to elicit cellular transformation.

Published in:

Oncogene, 2005, v. 24, n. 52, p. 7729, doi. 10.1038/sj.onc.1209046

By:

Ahuja, Deepika;
Sáenz-Robles, M. Teresa;
Pipas, James M.

Publication type:

Article

The Ancient Evolutionary History of Polyomaviruses.

Published in:

PLoS Pathogens, 2016, v. 12, n. 4, p. 1, doi. 10.1371/journal.ppat.1005574

By:

Buck, Christopher B.;
Van Doorslaer, Koenraad;
Peretti, Alberto;
Geoghegan, Eileen M.;
Tisza, Michael J.;
An, Ping;
Katz, Joshua P.;
Pipas, James M.;
McBride, Alison A.;
Camus, Alvin C.;
McDermott, Alexa J.;
Dill, Jennifer A.;
Delwart, Eric;
Ng, Terry F. F.;
Farkas, Kata;
Austin, Charlotte;
Kraberger, Simona;
Davison, William;
Pastrana, Diana V.;
Varsani, Arvind

Publication type:

Article