Works by Pinkel, Daniel

Results: 42

Improving Melanoma Classification by Integrating Genetic and Morphologic Features.

Published in:

PLoS Medicine, 2008, v. 5, n. 6, p. e120, doi. 10.1371/journal.pmed.0050120

By:

Viros, Amaya;
Fridlyand, Jane;
Bauer, Juergen;
Lasithiotakis, Konstantin;
Garbe, Claus;
Pinkel, Daniel;
Bastian, Boris C

Publication type:

Article

Amplicon boundaries at 20q13.2 in gastric adenocarcinoma.

Published in:

Journal of Pathology, 2003, v. 200, n. 3, p. 320, doi. 10.1002/path.1359

By:

Marjan M Weiss;
Antoine M Snijders;
Ernst J Kuipers;
Bauke Ylstra;
Daniel Pinkel;
Stefan GM Meuwissen;
Paul J van Diest;
Donna G Albertson;
Gerrit A Meijer

Publication type:

Article

Ring chromosome 15: characterization by array CGH.

Published in:

Human Genetics, 2006, v. 118, n. 5, p. 611, doi. 10.1007/s00439-005-0030-z

By:

Glass, Ian A.;
Rauen, Katherine A.;
Chen, Emily;
Parkes, Jillian;
Alberston, Donna G.;
Pinkel, Daniel;
Cotter, Philip D.

Publication type:

Article

Shaping of tumor and drug-resistant genomes by instability and selection.

Published in:

Oncogene, 2003, v. 22, n. 28, p. 4370, doi. 10.1038/sj.onc.1206482

By:

Snijders, Antoine M;
Fridlyand, Jane;
Mans, Dorus A;
Segraves, Richard;
Jain, Ajay N;
Pinkel, Daniel;
Albertson, Donna G

Publication type:

Article

Genome-wide-array-based comparative genomic hybridization reveals genetic homogeneity and frequent copy number increases encompassing CCNE1 in Fallopian tube carcinoma.

Published in:

Oncogene, 2003, v. 22, n. 27, p. 4281, doi. 10.1038/sj.onc.1206621

By:

Snijders, Antoine M;
Nowee, Marlies E;
Fridlyand, Jane;
Piek, Jurgen M J;
Dorsman, Josephine C;
Jain, Ajay N;
Pinkel, Daniel;
van Diest, Paul J;
Verheijen, Rene H M;
Albertson, Donna G

Publication type:

Article

Genomic profiling of gastric cancer predicts lymph node status and survival.

Published in:

Oncogene, 2003, v. 22, n. 12, p. 1872, doi. 10.1038/sj.onc.1206350

By:

Weiss, Marjan M;
Kuipers, Ernst J;
Postma, Cindy;
Snijders, Antoine M;
Siccama, Ivar;
Pinkel, Daniel;
Westerga, Johan;
Meuwissen, Stefan GM;
Albertson, Donna G;
Meijer, Gerrit A

Publication type:

Article

Corrigendum: Regional copy number–independent deregulation of transcription in cancer.

Published in:

2008

By:

Stransky, Nicolas;
Vallot, Céline;
Reyal, Fabien;
Bernard-Pierrot, Isabelle;
de Medina, Sixtina Gil Diez;
Segraves, Rick;
de Rycke, Yann;
Elvin, Paul;
Cassidy, Andrew;
Spraggon, Carolyn;
Graham, Alexander;
Southgate, Jennifer;
Asselain, Bernard;
Allory, Yves;
Abbou, Claude C;
Albertson, Donna G;
Thiery, Jean Paul;
Chopin, Dominique K;
Pinkel, Daniel;
Radvanyi, François

Publication type:

Correction Notice

Regional copy number–independent deregulation of transcription in cancer.

Published in:

Nature Genetics, 2006, v. 38, n. 12, p. 1386, doi. 10.1038/ng1923

By:

Stransky, Nicolas;
Vallot, Céline;
Reyal, Fabien;
Bernard-Pierrot, Isabelle;
de Medina, Sixtina Gil Diez;
Segraves, Rick;
de Rycke, Yann;
Elvin, Paul;
Cassidy, Andrew;
Spraggon, Carolyn;
Graham, Alexander;
Southgate, Jennifer;
Asselain, Bernard;
Allory, Yves;
Abbou, Claude C.;
Albertson, Donna G.;
Thiery, Jean Paul;
Chopin, Dominique K.;
Pinkel, Daniel;
Radvanyi, François

Publication type:

Article

Discovery of previously unidentified genomic disorders from the duplication architecture of the human genome.

Published in:

Nature Genetics, 2006, v. 38, n. 9, p. 1038, doi. 10.1038/ng1862

By:

Sharp, Andrew J.;
Hansen, Sierra;
Selzer, Rebecca R.;
Ze Cheng;
Regan, Regina;
Hurst, Jane A.;
Stewart, Helen;
Price, Sue M.;
Blair, Edward;
Hennekam, Raoul C.;
Fitzpatrick, Carrie A.;
Segraves, Rick;
Richmond, Todd A.;
Guiver, Cheryl;
Albertson, Donna G.;
Pinkel, Daniel;
Eis, Peggy S.;
Schwartz, Stuart;
Knight, Samantha J. L.;
Eichler, Evan E.

Publication type:

Article

Fine-scale structural variation of the human genome.

Published in:

Nature Genetics, 2005, v. 37, n. 7, p. 727, doi. 10.1038/ng1562

By:

Tuzun, Eray;
Sharp, Andrew J.;
Bailey, Jeffrey A.;
Kaul, Rajinder;
Morrison, V. Anne;
Pertz, Lisa M.;
Haugen, Eric;
Hayden, Hillary;
Albertson, Donna;
Pinkel, Daniel;
Olson, Maynard V.;
Eichler, Evan E.

Publication type:

Article

Array comparative genomic hybridization and its applications in cancer.

Published in:

Nature Genetics, 2005, v. 37, p. 11, doi. 10.1038/ng1569

By:

Pinkel, Daniel;
Albertson, Donna G

Publication type:

Article

Epigenome analyses using BAC microarrays identify evolutionary conservation of tissue-specific methylation of SHANK3.

Published in:

Nature Genetics, 2005, v. 37, n. 6, p. 645, doi. 10.1038/ng1563

By:

Tsui-Ting Ching;
Maunakea, Alika K.;
Jun, Peter;
Hong, Chibo;
Zardo, Giuseppe;
Pinkel, Daniel;
Albertson, Donna G.;
Fridlyand, Jane;
Jian-Hua Mao;
Shchors, Ksenya;
Weiss, William A.;
Costello, Joseph F.

Publication type:

Article

A tiling resolution DNA microarray with complete coverage of the human genome.

Published in:

Nature Genetics, 2004, v. 36, n. 3, p. 299, doi. 10.1038/ng1307

By:

Ishkanian, Adrian S.;
Malloff, Chad A.;
Watson, Spencer K.;
J de Leeuw, Ronald;
Chi, Bryan;
Coe, Bradley P.;
Snijders, Antoine;
Albertson, Donna G.;
Pinkel, Daniel;
Marra, Marco A.;
Ling, Victor;
MacAulay, Calum;
Lam, Wan L.

Publication type:

Article

Integrated genomic and epigenomic analyses pinpoint biallelic gene inactivation in tumors.

Published in:

Nature Genetics, 2002, v. 32, n. 3, p. 453, doi. 10.1038/ng1007

By:

Zardo, Giuseppe;
Tiirikainen, Maarit I.;
Hong, Chibo;
Misra, Anjan;
Feuerstein, Burt G.;
Volik, Stanislav;
Collins, Colin C.;
Lamborn, Kathleen R.;
Bollen, Andrew;
Pinkel, Daniel;
Albertson, Donna G.;
Costello, Joseph F.

Publication type:

Article

Genome scanning with array CGH delineates regional alterations in mouse islet carcinomas.

Published in:

Nature Genetics, 2001, v. 29, n. 4, p. 459, doi. 10.1038/ng771

By:

Hodgson, Graeme;
Hager, Jeffrey H.;
Volik, Stas;
Hariono, Sujatmi;
Wernick, Meredith;
Moore, Dan;
Albertson, Donna G.;
Pinkel, Daniel;
Collins, Colin;
Hanahan, Douglas;
Gray, Joe W.

Publication type:

Article

Assembly of microarrays for genome-wide measurement of DNA copy number.

Published in:

Nature Genetics, 2001, v. 29, n. 3, p. 263, doi. 10.1038/ng754

By:

Snijders, Antoine M.;
Nowak, Norma;
Segraves, Richard;
Blackwood, Stephanie;
Brown, Nils;
Conroy, Jeffrey;
Hamilton, Greg;
Hindle, Anna Katherine;
Huey, Bing;
Kimura, Karen;
Law, Sindy;
Myambo, Ken;
Palmer, Joel;
Ylstra, Bauke;
Yue, Jingzhu Pearl;
Gray, Joe W.;
Jain, Ajay N.;
Pinkel, Daniel;
Albertson, Donna G.

Publication type:

Article

Quantitative mapping of amplicon structure by array CGH identifies CYP24 as a candidate oncogene.

Published in:

Nature Genetics, 2000, v. 25, n. 2, p. 144, doi. 10.1038/75985

By:

Albertson, Donna G.;
Ylstra, Bauke;
Segraves, Richard;
Collins, Colin;
Dairkee, Shanaz H.;
Kowbel, David;
Kuo, Wen-Lin;
Gray, Joe W.;
Pinkel, Daniel

Publication type:

Article

Cancer cells, chemotherapy and gene clusters.

Published in:

Nature Genetics, 2000, v. 24, n. 3, p. 208, doi. 10.1038/73400

By:

Pinkel, Daniel

Publication type:

Article

High-resolution assessment of DNA loss in RIP-Tag mouse pancreatic carcinomas using comparative genomic hybridization to microarrays.

Published in:

1999

By:

Hodgson, Graeme;
Hager, Jeff;
Collins, Colin;
Albertson, Donna;
Pinkel, Daniel;
Hanahan, Doug;
Gray, Joe W.

Publication type:

Abstract

PIK3CA is implicated as an oncogene in ovarian cancer.

Published in:

Nature Genetics, 1999, v. 21, n. 1, p. 99, doi. 10.1038/5042

By:

Shayesteh, Laleh;
Lu, Yiling;
Kuo, Wen-Lin;
Baldocchi, Russell;
Godfrey, Tony;
Collins, Colin;
Pinkel, Daniel;
Powell, Bethan;
Mills, Gordon B.;
Gray, Joe W.

Publication type:

Article

High resolution analysis of DNA copy number variation using comparative genomic hybridization to microarrays.

Published in:

Nature Genetics, 1998, v. 20, n. 2, p. 207, doi. 10.1038/2524

By:

Pinkel, Daniel;
Segraves, Richard;
Sudar, Damir;
Clark, Steven;
Poole, Ian;
Kowbel, David;
Collins, Colin;
Kuo, Wen-Lin;
Chen, Chira;
Zhai, Ye;
Dairkee, Shanaz H.;
Ljung, Britt-marie;
Gray, Joe W.;
Albertson, Donna G.

Publication type:

Article

Fluorescence In situ hybridization to Y chromosomes in decondensed human sperm nuclei.

Published in:

Molecular Reproduction & Development, 1990, v. 27, n. 3, p. 200, doi. 10.1002/mrd.1080270304

By:

Wyrobek, Andrew J.;
Alhborn, Thomas;
Balhorn, Rod;
Stanker, Larry;
Pinkel, Daniel

Publication type:

Article

Analytical Description of Mutational Effects in Competing Asexual Populations.

Published in:

Genetics, 2007, v. 177, n. 4, p. 2135, doi. 10.1534/genetics.107.075697

By:

Pinkel, Daniel

Publication type:

Article

Expanding the genetic spectrum of pigmentation.

Published in:

Pigment Cell & Melanoma Research, 2008, v. 21, n. 5, p. 507, doi. 10.1111/j.1755-148X.2008.00490.x

By:

Bastian, Boris C.;
Pinkel, Daniel

Publication type:

Article

Molecular cytogenetics in human cancer diagnosis.

Published in:

Cancer (0008543X), 1992, v. 69, n. S6, p. 1536, doi. 10.1002/1097-0142(19920315)69:6+<1536::AID-CNCR2820691306>3.0.CO;2-J

By:

Gray, Joe W.;
Pinkel, Daniel

Publication type:

Article

Breast tumor copy number aberration phenotypes and genomic instability.

Published in:

BMC Cancer, 2006, v. 6, p. 96, doi. 10.1186/1471-2407-6-96

By:

Fridlyand, Jane;
Snijders, Antoine M;
Ylstra, Bauke;
Hua Li;
Olshen, Adam;
Segraves, Richard;
Dairkee, Shanaz;
Tokuyasu, Taku;
Ljung, Britt Marie;
Jain, Ajay N;
McLennan, Jane;
Ziegler, John;
Koei Chin;
Devries, Sandy;
Feiler, Heidi;
Gray, Joe W;
Waldman, Frederic;
Pinkel, Daniel;
Albertson, Donna G

Publication type:

Article

Chromosomal aberrations in angioimmunoblastic T‐cell lymphoma and peripheral T‐cell lymphoma unspecified: A matrix‐based CGH approach.

Published in:

Genes, Chromosomes & Cancer, 2007, v. 46, n. 1, p. 37, doi. 10.1002/gcc.20386

By:

Christoph Thorns;
Boris Bastian;
Daniel Pinkel;
Ritu Roydasgupta;
Jane Fridlyand;
Hartmut Merz;
Manuela Krokowski;
Heinz‐Wolfram Bernd;
Alfred Christian Feller

Publication type:

Article

Evaluation of genetic patterns in different tumor areas of intermediate-grade prostatic adenocarcinomas by high-resolution genomic array analysis ( The UCSF and Erasmus MC groups contributed equally to the study.).

Published in:

Genes, Chromosomes & Cancer, 2004, v. 39, n. 3, p. 249, doi. 10.1002/gcc.20001

By:

Herman van Dekken;
Pamela L. Paris;
Donna G. Albertson;
Janneke C. Alers;
Armann Andaya;
David Kowbel;
Theodorus H. van der Kwast;
Daniel Pinkel;
Fritz H. Schröder;
Kees J. Vissers;
Mark F. Wildhagen;
Colin Collins

Publication type:

Article

High-resolution genomic profiling of occult micrometastatic tumor cells.

Published in:

Genes, Chromosomes & Cancer, 2003, v. 36, n. 2, p. 159, doi. 10.1002/gcc.10160

By:

Kraus, Jürgen;
Pantel, Klaus;
Pinkel, Daniel;
Albertson, Donna G.;
Speicher, Michael R.

Publication type:

Article

Analyses of brain tumor cell lines confirm a simple model of relationships among fluorescence in situ hybridization, DNA index, and comparative genomic hybridization.

Published in:

Genes, Chromosomes & Cancer, 1997, v. 20, n. 4, p. 311, doi. 10.1002/(SICI)1098-2264(199712)20:4<311::AID-GCC1>3.0.CO;2-4

By:

Mohapatra, Gayatry;
Moore, Dan H.;
Kim, Dong H.;
Grewal, Lovedeep;
Hyun, William C.;
Waldman, Frederic M.;
Pinkel, Daniel;
Feuerstein, Burt G.

Publication type:

Article

DNA copy number changes associated with characteristic LOH in islet cell carcinomas of transgenic mice.

Published in:

Genes, Chromosomes & Cancer, 1997, v. 19, n. 2, p. 104, doi. 10.1002/(SICI)1098-2264(199706)19:2<104::AID-GCC6>3.0.CO;2-2

By:

Shi, Yu Ping;
Naik, Paul;
Dietrich, William F.;
Gray, Joe W.;
Hanahan, Douglas;
Pinkel, Daniel

Publication type:

Article

Current status and future prospects of array-based comparative genomic hybridisation.

Published in:

Briefings in Functional Genomics & Proteomics, 2003, v. 2, n. 1, p. 37, doi. 10.1093/bfgp/2.1.37

By:

Snijders, Antoine M.;
Pinkel, Daniel;
Albertson, Donna G.

Publication type:

Article

Detection of a human chromosomal translocation t(8;9) in a baby with multiple malformations using two-color fluorescence in situ hybridization.

Published in:

Pathology International, 1994, v. 44, n. 2, p. 145, doi. 10.1111/j.1440-1827.1994.tb01699.x

By:

Sasaki, Kohsuke;
Pinkel, Daniel;
Tsukahara, Masato;
Murano, Ichiro;
Gray, Joe W

Publication type:

Article

Rare amplicons implicate frequent deregulation of cell fate specification pathways in oral squamous cell carcinoma.

Published in:

Oncogene, 2005, v. 24, n. 26, p. 4232, doi. 10.1038/sj.onc.1208601

By:

Snijders, Antoine M;
Schmidt, Brian L;
Fridlyand, Jane;
Dekker, Nusi;
Pinkel, Daniel;
Jordan, Richard C K;
Albertson, Donna G

Publication type:

Article

Centromeric chromosomal translocations show tissue-specific differences between squamous cell carcinomas and adenocarcinomas.

Published in:

Oncogene, 2005, v. 24, n. 9, p. 1571, doi. 10.1038/sj.onc.1208294

By:

Hermsen, Mario;
Snijders, Antoine;
Guervós, Marta Alonso;
Tænzer, Simone;
Koerner, Ulrike;
Baak, Jan;
Pinkel, Daniel;
Albertson, Donna;
van Diest, Paul;
Meijer, Gerrit;
Schrock, Evelin

Publication type:

Article

Integration of high-resolution array comparative genomic hybridization analysis of chromosome 16q with expression array data refines common regions of loss at 16q23-qter and identifies underlying candidate tumor suppressor genes in prostate cancer.

Published in:

Oncogene, 2004, v. 23, n. 19, p. 3487, doi. 10.1038/sj.onc.1207474

By:

Doggett, Norman A.;
Albertson, Donna G.;
Andaya, Armann;
Chinnaiyan, Arul;
van Dekken, Herman;
Ginzinger, David;
Haqq, Christopher;
James, Karen;
Kamkar, Sherwin;
Kowbel, David;
Pinkel, Daniel;
Schmitt, Lars;
Simko, Jeffry P.;
Volik, Stanislav;
Weinberg, Vivian K.;
Paris, Pamela L.;
Collins, Colin;
Watson, J. E. Vivienne

Publication type:

Article

Whole genome scanning identifies genotypes associated with recurrence and metastasis in prostate tumors.

Published in:

Human Molecular Genetics, 2004, v. 13, n. 13, p. 1303, doi. 10.1093/hmg/ddh155

By:

Paris, Pamela L.;
Andaya, Armann;
Fridlyand, Jane;
Jain, Ajay N.;
Weinberg, Vivian;
Kowbel, David;
Brebner, John H.;
Simko, Jeff;
Watson, J.E. Vivienne;
Volik, Stas;
Albertson, Donna G.;
Pinkel, Daniel;
Alers, Janneke C.;
van der Kwast, Theodorus H.;
Vissers, Kees J.;
Schroder, Fritz H.;
Wildhagen, Mark F.;
Febbo, Phillip G.;
Chinnaiyan, Arul M.;
Pienta, Kenneth J.

Publication type:

Article

Genomic microarrays in human genetic disease and cancer.

Published in:

Human Molecular Genetics, 2003, v. 12, n. 2, p. 145, doi. 10.1093/hmg/ddg261

By:

Albertson, Donna G.;
Pinkel, Daniel

Publication type:

Article

Genomic microarrays in human genetic disease and cancer.

Published in:

Human Molecular Genetics, 2003, v. 12, n. suppl_2, p. R145, doi. 10.1093/hmg/ddg261

By:

Albertson, Donna G.;
Pinkel, Daniel

Publication type:

Article

Distribution and Significance of Occult Intraepidermal Tumor Cells Surrounding Primary Melanoma.

Published in:

Journal of Investigative Dermatology, 2008, v. 128, n. 8, p. 2024, doi. 10.1038/jid.2008.41

By:

North, Jeffrey P.;
Kageshita, Toshiro;
Pinkel, Daniel;
LeBoit, Philip E.;
Bastian, Boris C.

Publication type:

Article

Absence of PDGFRA Mutations in Primary Melanoma.

Published in:

2008

By:

Curtin, John A.;
Pinkel, Daniel;
Bastian, Boris C.

Publication type:

Letter

PI3-Kinase Subunits Are Infrequent Somatic Targets in Melanoma.

Published in:

Journal of Investigative Dermatology, 2006, v. 126, n. 7, p. 1660, doi. 10.1038/sj.jid.5700311

By:

Curtin, John A.;
Stark, Mitchell S.;
Pinkel, Daniel;
Hayward, Nicholas K.;
Bastian, Boris C.

Publication type:

Article