Works by Pilsner, J. Richard

Results: 35

ITAS: Integrated Transcript Annotation for Small RNA.

Published in:

Non-Coding RNA, 2022, v. 8, n. 3, p. 30, doi. 10.3390/ncrna8030030

By:

Stupnikov, Alexey;
Bezuglov, Vitaly;
Skakov, Ivan;
Shtratnikova, Victoria;
Pilsner, J. Richard;
Suvorov, Alexander;
Sergeyev, Oleg

Publication type:

Article

Mechanistic target of rapamycin (mTOR) pathway in Sertoli cells regulates age-dependent changes in sperm DNA methylation.

Published in:

eLife, 2024, p. 1, doi. 10.7554/eLife.90992

By:

Amir, Saira;
Arowolo, Olatunbosun;
Mironova, Ekaterina;
McGaunn, Joseph;
Oluwayiose, Oladele;
Sergeyev, Oleg;
Pilsner, J. Richard;
Suvorov, Alexander

Publication type:

Article

Differential role of bovine serum albumin and HCO<sub>3</sub><sup>−</sup> in the regulation of GSK3 alpha during mouse sperm capacitation.

Published in:

Molecular Human Reproduction, 2024, v. 30, n. 3, p. 1, doi. 10.1093/molehr/gaae007

By:

Mohanty, Gayatri;
Sanchez-Cardenas, Claudia;
Paudel, Bidur;
Tourzani, Darya A;
Salicioni, Ana M;
Santi, Celia M;
Gervasi, María G;
Pilsner, J Richard;
Darszon, Alberto;
Visconti, Pablo E

Publication type:

Article

Sperm DNA methylation mediates the association of male age on reproductive outcomes among couples undergoing infertility treatment.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-020-80857-2

By:

Oluwayiose, Oladele A.;
Wu, Haotian;
Saddiki, Hachem;
Whitcomb, Brian W.;
Balzer, Laura B.;
Brandon, Nicole;
Suvorov, Alexander;
Tayyab, Rahil;
Sites, Cynthia K.;
Hill, Lisa;
Marcho, Chelsea;
Pilsner, J. Richard

Publication type:

Article

Associations of Plasma Selenium with Arsenic and Genomic Methylation of Leukocyte DNA in Bangladesh.

Published in:

Environmental Health Perspectives, 2011, v. 119, n. 1, p. 113, doi. 10.1289/ehp.1001937

By:

Pilsner, J. Richard;
Hall, Megan N.;
Liu, Xinhua;
Ahsan, Habibul;
Ilievski, Vesna;
Slavkovich, Vesna;
Levy, Diane;
Factor-Litvak, Pam;
Graziano, Joseph H.;
Gamble, Mary V.

Publication type:

Article

Influence of Prenatal Lead Exposure on Genomic Methylation of Cord Blood DNA.

Published in:

Environmental Health Perspectives, 2009, v. 117, n. 9, p. 1466, doi. 10.1289/ehp.0800497

By:

Pilsner, J. Richard;
Hu, Howard;
Ettinger, Adrienne;
Sáánchez, Brisa N.;
Wright, Robert O.;
Cantonwine, David;
Lazarus, Alicia;
Lamadrid-Figueroa, Héctor;
Mercado-García, Adriana;
Téllez-Rojo, Martha Maria;
Hernández-Avila, Mauricio

Publication type:

Article

Folate, Cobalamin, Cysteine, Homocysteine, and Arsenic Metabolism among Children in Bangladesh.

Published in:

Environmental Health Perspectives, 2009, v. 117, n. 5, p. 825, doi. 10.1289/ehp.0800164

By:

Hall, Megan N.;
Liu, Xinhua;
Slavkovich, Vesna;
Ilievski, Vesna;
Pilsner, J. Richard;
Alam, Shafiul;
Factor-Litvak, Pam;
Graziano, Joseph H.;
Gamble, Mary V.

Publication type:

Article

Folate Deficiency, Hyperhomocysteinemia, Low Urinary Creatinine, and Hypomethylation of Leukocyte DNA Are Risk Factors for Arsenic-Induced Skin Lesions.

Published in:

Environmental Health Perspectives, 2009, v. 117, n. 2, p. 254, doi. 10.1289/ehp.11872

By:

Pilsner, J. Richard;
Liu, Xinhua;
Ahsan, Habibul;
Ilievski, Vesna;
Slavkovich, Vesna;
Levy, Diane;
Factor-Litvak, Pam;
Graziano, Joseph H.;
Gamble, Mary V.

Publication type:

Article

Determinants of Arsenic Metabolism: Blood Arsenic Metabolites, Plasma Folate, Cobalamin, and Homocysteine Concentrations in Maternal-Newborn Pairs.

Published in:

Environmental Health Perspectives, 2007, v. 115, n. 10, p. 1503, doi. 10.1289/ehp.9906

By:

Hall, Marni;
Gamble, Mary;
Slavkovich, Vesna;
Xinhua Liu;
Levy, Diane;
Zhongqi Cheng;
Van Geen, Alexander;
Yunus, Mahammad;
Rahman, Mahfuzar;
Pilsner, J. Richard;
Graziano, Joseph

Publication type:

Article

Folate, Homocysteine, and Arsenic Metabolism in Arsenic-Exposed Individuals in Bangladesh.

Published in:

Environmental Health Perspectives, 2005, v. 113, n. 12, p. 1683, doi. 10.1289/ehp.8084

By:

Gamble, Mary V.;
Xinhua Liu;
Ahsan, Habibul;
Pilsner, J. Richard;
Ilievski, Vesna;
Slavkovich, Vesna;
Parvez, Faruque;
Levy, Diane;
Factor-Litvak, Pam;
Graziano, Joseph H.

Publication type:

Article

Exploring the internal exposome of seminal plasma with semen quality and live birth: A Pilot Study.

Published in:

Systems Biology in Reproductive Medicine, 2023, v. 69, n. 4, p. 296, doi. 10.1080/19396368.2023.2195964

By:

Houle, Emily;
Li, YuanYuan;
Schroder, Madison;
McRitchie, Susan L;
Rahil, Tayyab;
Sites, Cynthia K;
Jenkins Sumner, Susan;
Pilsner, J. Richard

Publication type:

Article

Optimization of small RNA extraction and comparative study of NGS library preparation from low count sperm samples.

Published in:

Systems Biology in Reproductive Medicine, 2021, v. 67, n. 3, p. 230, doi. 10.1080/19396368.2021.1912851

By:

Shtratnikova, Victoria;
Naumov, Vladimir;
Bezuglov, Vitaly;
Zheludkevich, Anna;
Smigulina, Luidmila;
Dikov, Yury;
Denisova, Tatiana;
Suvorov, Alexander;
Pilsner, J. Richard;
Hauser, Russ;
Krawetz, Stephen A.;
Sergeyev, Oleg

Publication type:

Article

Extracellular vesicle cargo of the male reproductive tract and the paternal preconception environment.

Published in:

Systems Biology in Reproductive Medicine, 2021, v. 67, n. 2, p. 103, doi. 10.1080/19396368.2020.1867665

By:

Ayaz, Ahmet;
Houle, Emily;
Pilsner, J. Richard

Publication type:

Article

Effects of preconception exposure to phthalates on mouse sperm capacitation parameters.

Published in:

Andrology, 2023, v. 11, n. 7, p. 1484, doi. 10.1111/andr.13423

By:

Mohanty, Gayatri;
Tourzani, Darya A.;
Gervasi, María G.;
Houle, Emily;
Oluwayiose, Oladele;
Suvorov, Alexander;
Pilsner, J. Richard;
Visconti, Pablo E.

Publication type:

Article

Altered non‐coding RNA profiles of seminal plasma extracellular vesicles of men with poor semen quality undergoing in vitro fertilization treatment.

Published in:

Andrology, 2023, v. 11, n. 4, p. 677, doi. 10.1111/andr.13295

By:

Oluwayiose, Oladele A.;
Houle, Emily;
Whitcomb, Brian W.;
Suvorov, Alexander;
Rahil, Tayyab;
Sites, Cynthia K.;
Krawetz, Stephen A.;
Visconti, Pablo;
Pilsner, J. Richard

Publication type:

Article

The preconception environment and sperm epigenetics.

Published in:

Andrology, 2020, v. 8, n. 4, p. 924, doi. 10.1111/andr.12753

By:

Marcho, Chelsea;
Oluwayiose, Oladele A.;
Pilsner, J. Richard

Publication type:

Article

White blood cell DNA methylation and risk of breast cancer in the Prostate, Lung, Colorectal, and Ovarian Cancer Screening Trial (PLCO).

Published in:

2017

By:

Sturgeon, Susan;
Pilsner, J.;
Arcaro, Kathleen;
Ikuma, Kaoru;
Wu, Haotian;
Kim, Soon-Mi;
Chopra-Tandon, Nayha;
Karpf, Adam;
Ziegler, Regina;
Schairer, Catherine;
Balasubramanian, Raji;
Reckhow, David;
Sturgeon, Susan R;
Pilsner, J Richard;
Arcaro, Kathleen F;
Karpf, Adam R;
Ziegler, Regina G;
Reckhow, David A

Publication type:

journal article

Associations between Sperm Epigenetic Age and Semen Parameters: An Evaluation of Clinical and Non-Clinical Cohorts.

Published in:

Current Issues in Molecular Biology, 2024, v. 46, n. 2, p. 1567, doi. 10.3390/cimb46020101

By:

Sawant, Savni;
Oluwayiose, Oladele A.;
Nowak, Karolina;
Maxwell, DruAnne L.;
Houle, Emily;
Paskavitz, Amanda L.;
Saddiki, Hachem;
Bertolla, Ricardo P.;
Pilsner, J. Richard

Publication type:

Article

Approaches for sRNA Analysis of Human RNA-Seq Data: Comparison, Benchmarking.

Published in:

International Journal of Molecular Sciences, 2023, v. 24, n. 4, p. 4195, doi. 10.3390/ijms24044195

By:

Bezuglov, Vitalik;
Stupnikov, Alexey;
Skakov, Ivan;
Shtratnikova, Victoria;
Pilsner, J. Richard;
Suvorov, Alexander;
Sergeyev, Oleg

Publication type:

Article

Mechanisms of Male Reproductive Toxicity of Polybrominated Diphenyl Ethers.

Published in:

International Journal of Molecular Sciences, 2022, v. 23, n. 22, p. 14229, doi. 10.3390/ijms232214229

By:

Arowolo, Olatunbosun;
Pilsner, J. Richard;
Sergeyev, Oleg;
Suvorov, Alexander

Publication type:

Article

Aging Induces Profound Changes in sncRNA in Rat Sperm and These Changes Are Modified by Perinatal Exposure to Environmental Flame Retardant.

Published in:

International Journal of Molecular Sciences, 2020, v. 21, n. 21, p. 8252, doi. 10.3390/ijms21218252

By:

Suvorov, Alexander;
Pilsner, J. Richard;
Naumov, Vladimir;
Shtratnikova, Victoria;
Zheludkevich, Anna;
Gerasimov, Evgeny;
Logacheva, Maria;
Sergeyev, Oleg

Publication type:

Article

Aclust2.0: a revamped unsupervised R tool for Infinium methylation beadchips data analyses.

Published in:

Bioinformatics, 2022, v. 38, n. 20, p. 4820, doi. 10.1093/bioinformatics/btac583

By:

Oluwayiose, Oladele A;
Wu, Haotian;
Gao, Feng;
Baccarelli, Andrea A;
Sofer, Tamar;
Pilsner, J Richard

Publication type:

Article

What human sperm RNA-Seq tells us about the microbiome.

Published in:

Journal of Assisted Reproduction & Genetics, 2020, v. 37, n. 2, p. 359, doi. 10.1007/s10815-019-01672-x

By:

Swanson, Grace M.;
Moskovtsev, Sergey;
Librach, Clifford;
Pilsner, J. Richard;
Goodrich, Robert;
Krawetz, Stephen A.

Publication type:

Article

Age-associated epigenetic changes in mammalian sperm: implications for offspring health and development.

Published in:

Human Reproduction Update, 2023, v. 29, n. 1, p. 24, doi. 10.1093/humupd/dmac033

By:

Ashapkin, Vasily;
Suvorov, Alexander;
Pilsner, J Richard;
Krawetz, Stephen A;
Sergeyev, Oleg

Publication type:

Article

Sperm epigenetic clock associates with pregnancy outcomes in the general population.

Published in:

2022

By:

Pilsner, J Richard;
Saddiki, Hachem;
Whitcomb, Brian W;
Suvorov, Alexander;
Louis, Germaine M Buck;
Mumford, Sunni L;
Schisterman, Enrique F;
Oluwayiose, Oladele A;
Balzer, Laura B;
Buck Louis, Germaine M

Publication type:

journal article

Sperm mitochondrial DNA biomarkers and couple fecundity.

Published in:

2020

By:

Rosati, Allyson J;
Whitcomb, Brian W;
Brandon, Nicole;
Louis, Germaine M Buck;
Mumford, Sunni L;
Schisterman, Enrique F;
Pilsner, J Richard;
Buck Louis, Germaine M

Publication type:

journal article

Creatinine, Arsenic Metabolism, and Renal Function in an Arsenic-Exposed Population in Bangladesh.

Published in:

PLoS ONE, 2014, v. 9, n. 12, p. 1, doi. 10.1371/journal.pone.0113760

By:

Peters, Brandilyn A.;
Hall, Megan N.;
Liu, Xinhua;
Neugut, Y. Dana;
Pilsner, J. Richard;
Levy, Diane;
Ilievski, Vesna;
Slavkovich, Vesna;
Islam, Tariqul;
Factor-Litvak, Pam;
Graziano, Joseph H.;
Gamble, Mary V.

Publication type:

Article

Social Factors and Leukocyte DNA Methylation of Repetitive Sequences: The Multi-Ethnic Study of Atherosclerosis.

Published in:

PLoS ONE, 2013, v. 8, n. 1, p. 1, doi. 10.1371/journal.pone.0054018

By:

Subramanyam, Malavika A.;
Diez-Roux, Ana V.;
Pilsner, J. Richard;
Villamor, Eduardo;
Donohue, Kathleen M.;
Liu, Yongmei;
Jenny, Nancy S.

Publication type:

Article

Influence of Prenatal Arsenic Exposure and Newborn Sex on Global Methylation of Cord Blood DNA.

Published in:

PLoS ONE, 2012, v. 7, n. 5, p. 1, doi. 10.1371/journal.pone.0037147

By:

Pilsner, J. Richard;
Hall, Megan N.;
Liu, Xinhua;
Ilievski, Vesna;
Slavkovich, Vesna;
Levy, Diane;
Factor-Litvak, Pam;
Yunus, Mahammad;
Rahman, Mahfuzar;
Graziano, Joseph H.;
Gamble, Mary V.

Publication type:

Article

Dysregulation of BDNF-TrkB Signaling in Developing Hippocampal Neurons by Pb2+: Implications for an Environmental Basis of Neurodevelopmental Disorders.

Published in:

Toxicological Sciences, 2012, v. 127, n. 1, p. 277, doi. 10.1093/toxsci/kfs090

By:

Stansfield, Kirstie H.;
Pilsner, J. Richard;
Lu, Quan;
Wright, Robert O.;
Guilarte, Tomás R.

Publication type:

Article

Associations of sperm mitochondrial DNA copy number and deletion rate with fertilization and embryo development in a clinical setting.

Published in:

2019

By:

Wu, Haotian;
Whitcomb, Brian W;
Huffman, Alexandra;
Brandon, Nicole;
Labrie, Suzanne;
Tougias, Ellen;
Lynch, Kelly;
Rahil, Tayyab;
Sites, Cynthia K;
Pilsner, J Richard

Publication type:

journal article

Preconception urinary phthalate concentrations and sperm DNA methylation profiles among men undergoing IVF treatment: a cross-sectional study.

Published in:

2017

By:

Haotian Wu;
Estill, Molly S.;
Shershebnev, Alexander;
Suvorov, Alexander;
Krawetz, Stephen A.;
Whitcomb, Brian W.;
Dinnie, Holly;
Rahil, Tayyab;
Sites, Cynthia K.;
Pilsner, J. Richard;
Wu, Haotian

Publication type:

journal article

Parental contributions to early embryo development: influences of urinary phthalate and phthalate alternatives among couples undergoing IVF treatment.

Published in:

Human Reproduction, 2017, v. 32, n. 1, p. 65, doi. 10.1093/humrep/dew301

By:

Haotian Wu;
Ashcraft, Lisa;
Whitcomb, Brian W.;
Rahil, Tayyab;
Tougias, Ellen;
Sites, Cynthia K.;
Pilsner, J. Richard

Publication type:

Article

Semen Quality Parameters Among U.S. Veterans of Operation Enduring Freedom, Operation Iraqi Freedom, and Operation New Dawn.

Published in:

2017

By:

Lindaman, Luke A.;
Pilsner, J. Richard;
Kroll-Desrosiers, Aimee R.;
Mattocks, Kristin M.;
Haskell, Sally;
Brandt, Cynthia A.

Publication type:

journal article

Mercury-associated DNA hypomethylation in polar bear brains via the LUminometric Methylation Assay: a sensitive method to study epigenetics in wildlife.

Published in:

Molecular Ecology, 2010, v. 19, n. 2, p. 307, doi. 10.1111/j.1365-294X.2009.04452.x

By:

RICHARD PILSNER, J.;
LAZARUS, ALICIA L.;
NAM, DONG-HA;
LETCHER, ROBERT J.;
SONNE, CHRISTIAN;
DIETZ, RUNE;
BASU, NILADRI

Publication type:

Article