Works by Pillay, Manoj

Results: 32
    1

    High-quality-draft genome sequence of the fermenting bacterium Anaerobium acetethylicum type strain GluBS11T (DSM 29698).

    Published in:
    Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0236-4
    By:
    • Patil, Yogita;
    • Müller, Nicolai;
    • Schink, Bernhard;
    • Whitman, William B.;
    • Huntemann, Marcel;
    • Clum, Alicia;
    • Pillay, Manoj;
    • Palaniappan, Krishnaveni;
    • Varghese, Neha;
    • Mikhailova, Natalia;
    • Stamatis, Dimitrios;
    • Reddy, T. B. K.;
    • Daum, Chris;
    • Shapiro, Nicole;
    • Ivanova, Natalia;
    • Kyrpides, Nikos;
    • Woyke, Tanja;
    • Junghare, Madan
    Publication type:
    Article
    2

    High-quality permanent draft genome sequence of the Bradyrhizobium elkanii type strain USDA 76<sup>T</sup>, isolated from Glycine max (L.) Merr.

    Published in:
    Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0238-2
    By:
    • Reeve, Wayne;
    • van Berkum, Peter;
    • Ardley, Julie;
    • Tian, Rui;
    • Gollagher, Margaret;
    • Marinova, Dora;
    • Elia, Patrick;
    • Reddy, T. B. K.;
    • Pillay, Manoj;
    • Varghese, Neha;
    • Seshadri, Rekha;
    • Ivanova, Natalia;
    • Woyke, Tanja;
    • Baeshen, Mohamed N.;
    • Baeshen, Nabih A.;
    • Kyrpides, Nikos
    Publication type:
    Article
    3

    Complete genome sequence of Jiangella gansuensis strain YIM 002<sup>T</sup> (DSM 44835<sup>T</sup>), the type species of the genus Jiangella and source of new antibiotic compounds.

    Published in:
    Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0226-6
    By:
    • Jian-Yu Jiao;
    • Carro, Lorena;
    • Lan Liu;
    • Xiao-Yang Gao;
    • Xiao-Tong Zhang;
    • Hozzein, Wael N.;
    • Lapidus, Alla;
    • Huntemann, Marcel;
    • Reddy, T. B. K.;
    • Varghese, Neha;
    • Hadjithomas, Michalis;
    • Ivanova, Natalia N.;
    • Göker, Markus;
    • Pillay, Manoj;
    • Eisen, Jonathan A.;
    • Woyke, Tanja;
    • Klenk, Hans-Peter;
    • Kyrpides, Nikos C.;
    • Wen-Jun Li
    Publication type:
    Article
    4
    5

    Permanent draft genome of Thermithiobacillus tepidarius DSM 3134T, a moderately thermophilic, obligately chemolithoautotrophic member of the Acidithiobacillia.

    Published in:
    Standards in Genomic Sciences, 2016, p. 1, doi. 10.1186/s40793-016-0188-0
    By:
    • Boden, Rich;
    • Hutt, Lee P.;
    • Huntemann, Marcel;
    • Clum, Alicia;
    • Pillay, Manoj;
    • Palaniappan, Krishnaveni;
    • Varghese, Neha;
    • Mikhailova, Natalia;
    • Stamatis, Dimitrios;
    • Reddy, Tatiparthi;
    • Chew Yee Ngan;
    • Daum, Chris;
    • Shapiro, Nicole;
    • Markowitz, Victor;
    • Ivanova, Natalia;
    • Woyke, Tanja;
    • Kyrpides, Nikos
    Publication type:
    Article
    6
    7
    8

    Complete genome of Nitrosospira briensis C-128, an ammonia-oxidizing bacterium from agricultural soil.

    Published in:
    Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0168-4
    By:
    • Rice, Marlen C.;
    • Norton, Jeanette M.;
    • Valois, Frederica;
    • Bollmann, Annette;
    • Bottomley, Peter J.;
    • Klotz, Martin G.;
    • Laanbroek, Hendrikus J.;
    • Suwa, Yuichi;
    • Stein, Lisa Y.;
    • Sayavedra-Soto, Luis;
    • Woyke, Tanja;
    • Shapiro, Nicole;
    • Goodwin, Lynne A.;
    • Huntemann, Marcel;
    • Clum, Alicia;
    • Pillay, Manoj;
    • Kyrpides, Nikos;
    • Varghese, Neha;
    • Mikhailova, Natalia;
    • Markowitz, Victor
    Publication type:
    Article
    9

    High-quality permanent draft genome sequence of Ensifer sp. PC2, isolated from a nitrogen-fixing root nodule of the legume tree (Khejri) native to the Thar Desert of India.

    Published in:
    Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0157-7
    By:
    • Gehlot, Hukam Singh;
    • Ardley, Julie;
    • Tak, Nisha;
    • Rui Tian;
    • Poonar, Neetu;
    • Meghwal, Raju R.;
    • Rathi, Sonam;
    • Tiwari, Ravi;
    • Adnawani, Wan;
    • Seshadri, Rekha;
    • Reddy, T. B. K.;
    • Pati, Amrita;
    • Woyke, Tanja;
    • Pillay, Manoj;
    • Markowitz, Victor;
    • Baeshen, Mohammed N.;
    • Al-Hejin, Ahmed M.;
    • Ivanova, Natalia;
    • Kyrpides, Nikos;
    • Reeve, Wayne
    Publication type:
    Article
    10

    High-quality draft genome sequence of Flavobacterium suncheonense GH29-5<sup>T</sup> (DSM 17707<sup>T</sup>) isolated from greenhouse soil in South Korea, and emended description of Flavobacterium suncheonense GH29-5<sup>T</sup>.

    Published in:
    Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0159-5
    By:
    • Tashkandy, Nisreen;
    • Sabban, Sari;
    • Fakieh, Mohammad;
    • Meier-Kolthoff, Jan P.;
    • Sixing Huang;
    • Tindall, Brian J.;
    • Rohde, Manfred;
    • Baeshen, Mohammed N.;
    • Baeshen, Nabih A.;
    • Lapidus, Alla;
    • Copeland, Alex;
    • Pillay, Manoj;
    • Reddy, T. B. K.;
    • Huntemann, Marcel;
    • Pati, Amrita;
    • Ivanova, Natalia;
    • Markowitz, Victor;
    • Woyke, Tanja;
    • Göker, Markus;
    • Klenk, Hans-Peter
    Publication type:
    Article
    11
    12

    High-quality draft genome sequence of the Thermus amyloliquefaciens type strain YIM 77409 with an incomplete denitrification pathway.

    Published in:
    Standards in Genomic Sciences, 2016, v. 11, n. 1, p. 1, doi. 10.1186/s40793-016-0140-3
    By:
    • Zhou, En-Min;
    • Murugapiran, Senthil;
    • Mefferd, Chrisabelle;
    • Liu, Lan;
    • Xian, Wen-Dong;
    • Yin, Yi-Rui;
    • Ming, Hong;
    • Yu, Tian-Tian;
    • Huntemann, Marcel;
    • Clum, Alicia;
    • Pillay, Manoj;
    • Palaniappan, Krishnaveni;
    • Varghese, Neha;
    • Mikhailova, Natalia;
    • Stamatis, Dimitrios;
    • Reddy, T.;
    • Ngan, Chew;
    • Daum, Chris;
    • Shapiro, Nicole;
    • Markowitz, Victor
    Publication type:
    Article
    13

    The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4).

    Published in:
    Standards in Genomic Sciences, 2016, v. 11, n. 1, p. 1, doi. 10.1186/s40793-016-0138-x
    By:
    • Huntemann, Marcel;
    • Ivanova, Natalia;
    • Mavromatis, Konstantinos;
    • Tripp, H.;
    • Paez-Espino, David;
    • Tennessen, Kristin;
    • Palaniappan, Krishnaveni;
    • Szeto, Ernest;
    • Pillay, Manoj;
    • Chen, I-Min;
    • Pati, Amrita;
    • Nielsen, Torben;
    • Markowitz, Victor;
    • Kyrpides, Nikos
    Publication type:
    Article
    14
    15
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    17
    18

    Draft genome of Paraburkholderia caballeronis TNe-841<sup>T</sup>, a free-living, nitrogen-fixing, tomato plant-associated bacterium.

    Published in:
    Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0294-7
    By:
    • Rojas-Rojas, Fernando Uriel;
    • Tapia-García, Erika Yanet;
    • Maymon, Maskit;
    • Humm, Ethan;
    • Huntemann, Marcel;
    • Clum, Alicia;
    • Pillay, Manoj;
    • Palaniappan, Krishnaveni;
    • Varghese, Neha;
    • Mikhailova, Natalia;
    • Stamatis, Dimitrios;
    • Reddy, T. B. K.;
    • Markowitz, Victor;
    • Ivanova, Natalia;
    • Kyrpides, Nikos;
    • Woyke, Tanja;
    • Shapiro, Nicole;
    • Hirsch, Ann M.;
    • Estrada-de los Santos, Paulina
    Publication type:
    Article
    19

    Draft genome sequence of Marinobacterium rhizophilum CL-YJ9<sup>T</sup> (DSM 18822<sup>T</sup>), isolated from the rhizosphere of the coastal tidal-flat plant Suaeda japonica.

    Published in:
    Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0275-x
    By:
    • Dong Han Choi;
    • Gwang II Jang;
    • Lapidus, Alla;
    • Copeland, Alex;
    • Reddy, T. B. K.;
    • Mukherjee, Supratim;
    • Huntemann, Marcel;
    • Varghese, Neha;
    • Ivanova, Natalia;
    • Pillay, Manoj;
    • Tindall, Brian J.;
    • Göker, Markus;
    • Woyke, Tanja;
    • Klenk, Hans-Peter;
    • Kyrpides, Nikos C.;
    • Byung Cheol Cho
    Publication type:
    Article
    20
    21

    High-quality genome sequence of the radioresistant bacterium Deinococcus ficus KS 0460.

    Published in:
    Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0258-y
    By:
    • Matrosova, Vera Y.;
    • Gaidamakova, Elena K.;
    • Makarova, Kira S.;
    • Grichenko, Olga;
    • Klimenkova, Polina;
    • Volpe, Robert P.;
    • Tkavc, Rok;
    • Ertem, Gözen;
    • Conze, Isabel H.;
    • Brambilla, Evelyne;
    • Huntemann, Marcel;
    • Clum, Alicia;
    • Pillay, Manoj;
    • Palaniappan, Krishnaveni;
    • Varghese, Neha;
    • Mikhailova, Natalia;
    • Stamatis, Dimitrios;
    • Reddy, T. B. K.;
    • Daum, Chris;
    • Shapiro, Nicole
    Publication type:
    Article
    22

    High quality permanent draft genome sequence of Chryseobacterium bovis DSM 19482<sup>T</sup>, isolated from raw cow milk.

    Published in:
    Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0242-6
    By:
    • Laviad-Shitrit, Sivan;
    • Göker, Markus;
    • Huntemann, Marcel;
    • Clum, Alicia;
    • Pillay, Manoj;
    • Palaniappan, Krishnaveni;
    • Varghese, Neha;
    • Mikhailova, Natalia;
    • Stamatis, Dimitrios;
    • Reddy, T. B. K.;
    • Daum, Chris;
    • Shapiro, Nicole;
    • Markowitz, Victor;
    • Ivanova, Natalia;
    • Woyke, Tanja;
    • Klenk, Hans-Peter;
    • Kyrpides, Nikos C.;
    • Halpern, Malka
    Publication type:
    Article
    23
    24

    IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes.

    Published in:
    Nucleic Acids Research, 2019, v. 47, n. D1, p. D666, doi. 10.1093/nar/gky901
    By:
    • Chen, I-Min A;
    • Chu, Ken;
    • Palaniappan, Krishna;
    • Pillay, Manoj;
    • Ratner, Anna;
    • Huang, Jinghua;
    • Huntemann, Marcel;
    • Varghese, Neha;
    • White, James R;
    • Seshadri, Rekha;
    • Smirnova, Tatyana;
    • Kirton, Edward;
    • Jungbluth, Sean P;
    • Woyke, Tanja;
    • Eloe-Fadrosh, Emiley A;
    • Ivanova, Natalia N;
    • Kyrpides, Nikos C
    Publication type:
    Article
    25

    IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses.

    Published in:
    Nucleic Acids Research, 2017, v. 45, n. D1, p. D457, doi. 10.1093/nar/gkw1030
    By:
    • Paez-Espino, David;
    • Chen, I.-Min A.;
    • Palaniappan, Krishna;
    • Ratner, Anna;
    • Ken Chu;
    • Szeto, Ernest;
    • Pillay, Manoj;
    • Jinghua Huang;
    • Markowitz, Victor M.;
    • Nielsen, Torben;
    • Huntemann, Marcel;
    • Reddy, T. B. K.;
    • Pavlopoulos, Georgios A.;
    • Sullivan, Matthew B.;
    • Campbell, Barbara J.;
    • Feng Chen;
    • McMahon, Katherine;
    • Hallam, Steve J.;
    • Denef, Vincent;
    • Cavicchioli, Ricardo
    Publication type:
    Article
    26

    IMG/M: integrated genome and metagenome comparative data analysis system.

    Published in:
    Nucleic Acids Research, 2017, v. 45, n. D1, p. D507, doi. 10.1093/nar/gkw929
    By:
    • Chen, I.-Min A.;
    • Markowitz, Victor M.;
    • Ken Chu;
    • Palaniappan, Krishna;
    • Szeto, Ernest;
    • Pillay, Manoj;
    • Ratner, Anna;
    • Jinghua Huang;
    • Andersen, Evan;
    • Huntemann, Marcel;
    • Varghese, Neha;
    • Hadjithomas, Michalis;
    • Tennessen, Kristin;
    • Nielsen, Torben;
    • Ivanova, Natalia N.;
    • Kyrpides, Nikos C.
    Publication type:
    Article
    27

    IMG 4 version of the integrated microbial genomes comparative analysis system.

    Published in:
    Nucleic Acids Research, 2014, v. 42, n. D1, p. D560, doi. 10.1093/nar/gkt963
    By:
    • Markowitz, Victor M.;
    • Chen, I-Min A.;
    • Palaniappan, Krishna;
    • Chu, Ken;
    • Szeto, Ernest;
    • Pillay, Manoj;
    • Ratner, Anna;
    • Huang, Jinghua;
    • Woyke, Tanja;
    • Huntemann, Marcel;
    • Anderson, Iain;
    • Billis, Konstantinos;
    • Varghese, Neha;
    • Mavromatis, Konstantinos;
    • Pati, Amrita;
    • Ivanova, Natalia N.;
    • Kyrpides, Nikos C.
    Publication type:
    Article
    28

    IMG/M 4 version of the integrated metagenome comparative analysis system.

    Published in:
    Nucleic Acids Research, 2014, v. 42, n. D1, p. D568, doi. 10.1093/nar/gkt919
    By:
    • Markowitz, Victor M.;
    • Chen, I-Min A.;
    • Chu, Ken;
    • Szeto, Ernest;
    • Palaniappan, Krishna;
    • Pillay, Manoj;
    • Ratner, Anna;
    • Huang, Jinghua;
    • Pagani, Ioanna;
    • Tringe, Susannah;
    • Huntemann, Marcel;
    • Billis, Konstantinos;
    • Varghese, Neha;
    • Tennessen, Kristin;
    • Mavromatis, Konstantinos;
    • Pati, Amrita;
    • Ivanova, Natalia N.;
    • Kyrpides, Nikos C.
    Publication type:
    Article
    29

    Genomics, Exometabolomics, and Metabolic Probing Reveal Conserved Proteolytic Metabolism of Thermoflexus hugenholtzii and Three Candidate Species From China and Japan.

    Published in:
    Frontiers in Microbiology, 2021, v. 11, p. N.PAG, doi. 10.3389/fmicb.2021.632731
    By:
    • Thomas, Scott C.;
    • Payne, Devon;
    • Tamadonfar, Kevin O.;
    • Seymour, Cale O.;
    • Jiao, Jian-Yu;
    • Murugapiran, Senthil K.;
    • Lai, Dengxun;
    • Lau, Rebecca;
    • Bowen, Benjamin P.;
    • Silva, Leslie P.;
    • Louie, Katherine B.;
    • Huntemann, Marcel;
    • Clum, Alicia;
    • Spunde, Alex;
    • Pillay, Manoj;
    • Palaniappan, Krishnaveni;
    • Varghese, Neha;
    • Mikhailova, Natalia;
    • Chen, I-Min;
    • Stamatis, Dimitrios
    Publication type:
    Article
    30
    31

    An expression atlas of rice mRNAs and small RNAs.

    Published in:
    Nature Biotechnology, 2007, v. 25, n. 4, p. 473, doi. 10.1038/nbt1291
    By:
    • Nobuta, Kan;
    • Venu, R. C.;
    • Cheng Lu;
    • Beló, André;
    • Vemaraju, Kalyan;
    • Kulkarni, Karthik;
    • Wenzhong Wang;
    • Pillay, Manoj;
    • Green, Pamela J.;
    • Guo-liang Wang;
    • Meyers, Blake C.
    Publication type:
    Article
    32

    Draft Genome of Burkholderia cenocepacia TAtl-371, a Strain from the Burkholderia cepacia Complex Retains Antagonism in Different Carbon and Nitrogen Sources.

    Published in:
    Current Microbiology, 2019, v. 76, n. 5, p. 566, doi. 10.1007/s00284-019-01657-0
    By:
    • Rojas-Rojas, Fernando Uriel;
    • Sánchez-López, David;
    • Tapia-García, Erika Yanet;
    • Arroyo-Herrera, Ivan;
    • Maymon, Maskit;
    • Humm, Ethan;
    • Huntemann, Marcel;
    • Clum, Alicia;
    • Pillay, Manoj;
    • Palaniappan, Krishnaveni;
    • Varghese, Neha;
    • Mikhailova, Natalia;
    • Stamatis, Dimitrios;
    • Reddy, T. B. K.;
    • Ivanova, Natalia;
    • Kyrpides, Nikos;
    • Woyke, Tanja;
    • Shapiro, Nicole;
    • Hirsch, Ann M.;
    • Ibarra, J. Antonio
    Publication type:
    Article