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Genomics, Exometabolomics, and Metabolic Probing Reveal Conserved Proteolytic Metabolism of Thermoflexus hugenholtzii and Three Candidate Species From China and Japan.
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- Frontiers in Microbiology, 2021, v. 11, p. N.PAG, doi. 10.3389/fmicb.2021.632731
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- Article
Draft Genome of Burkholderia cenocepacia TAtl-371, a Strain from the Burkholderia cepacia Complex Retains Antagonism in Different Carbon and Nitrogen Sources.
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- Current Microbiology, 2019, v. 76, n. 5, p. 566, doi. 10.1007/s00284-019-01657-0
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- Article
IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes.
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- Nucleic Acids Research, 2019, v. 47, n. D1, p. D666, doi. 10.1093/nar/gky901
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- Article
Draft genome of Paraburkholderia caballeronis TNe-841<sup>T</sup>, a free-living, nitrogen-fixing, tomato plant-associated bacterium.
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- Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0294-7
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- Article
Draft genome sequence of Actinotignum schaalii DSM 15541<sup>T</sup>: Genetic insights into the lifestyle, cell fitness and virulence.
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- PLoS ONE, 2017, v. 12, n. 12, p. 1, doi. 10.1371/journal.pone.0188914
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- Article
Draft genome sequence of Marinobacterium rhizophilum CL-YJ9<sup>T</sup> (DSM 18822<sup>T</sup>), isolated from the rhizosphere of the coastal tidal-flat plant Suaeda japonica.
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- Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0275-x
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Draft genome sequence of Dethiobacter alkaliphilus strain AHT1<sup>T</sup>, a gram-positive sulfidogenic polyextremophile.
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- Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0268-9
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- Article
High-quality genome sequence of the radioresistant bacterium Deinococcus ficus KS 0460.
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- Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0258-y
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- Article
High quality permanent draft genome sequence of Chryseobacterium bovis DSM 19482<sup>T</sup>, isolated from raw cow milk.
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- Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0242-6
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- Article
High-quality permanent draft genome sequence of the Bradyrhizobium elkanii type strain USDA 76<sup>T</sup>, isolated from Glycine max (L.) Merr.
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- Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0238-2
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- Article
High-quality-draft genome sequence of the fermenting bacterium Anaerobium acetethylicum type strain GluBS11T (DSM 29698).
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- Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0236-4
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- Article
Complete genome sequence of Jiangella gansuensis strain YIM 002<sup>T</sup> (DSM 44835<sup>T</sup>), the type species of the genus Jiangella and source of new antibiotic compounds.
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- Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0226-6
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- Article
Permanent draft genome of Thiobacillus thioparus DSM 505<sup>T</sup>, an obligately chemolithoautotrophic member of the Betaproteobacteria.
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- Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0229-3
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- Article
IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses.
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- Nucleic Acids Research, 2017, v. 45, n. D1, p. D457, doi. 10.1093/nar/gkw1030
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- Article
IMG/M: integrated genome and metagenome comparative data analysis system.
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- Nucleic Acids Research, 2017, v. 45, n. D1, p. D507, doi. 10.1093/nar/gkw929
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- Article
Permanent draft genome of Thermithiobacillus tepidarius DSM 3134T, a moderately thermophilic, obligately chemolithoautotrophic member of the Acidithiobacillia.
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- Standards in Genomic Sciences, 2016, p. 1, doi. 10.1186/s40793-016-0188-0
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- Article
Complete genome sequence of Desulfurivibrio alkaliphilus strain AHT2<sup>T</sup>, a haloalkaliphilic sulfidogen from Egyptian hypersaline alkaline lakes.
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- Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0184-4
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- Article
An improved high-quality draft genome sequence of Carnobacterium inhibens subsp. inhibens strain K1<sup>T</sup>.
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- Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0193-3
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- Article
Complete genome of Nitrosospira briensis C-128, an ammonia-oxidizing bacterium from agricultural soil.
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- Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0168-4
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High-quality permanent draft genome sequence of Ensifer sp. PC2, isolated from a nitrogen-fixing root nodule of the legume tree (Khejri) native to the Thar Desert of India.
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- Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0157-7
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High-quality draft genome sequence of Flavobacterium suncheonense GH29-5<sup>T</sup> (DSM 17707<sup>T</sup>) isolated from greenhouse soil in South Korea, and emended description of Flavobacterium suncheonense GH29-5<sup>T</sup>.
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- Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0159-5
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Supporting community annotation and user collaboration in the integrated microbial genomes (IMG) system.
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- BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-2629-y
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Erratum to: The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4).
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- Standards in Genomic Sciences, 2016, v. 11, n. 1, p. 1, doi. 10.1186/s40793-016-0148-8
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High-quality draft genome sequence of the Thermus amyloliquefaciens type strain YIM 77409 with an incomplete denitrification pathway.
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- Standards in Genomic Sciences, 2016, v. 11, n. 1, p. 1, doi. 10.1186/s40793-016-0140-3
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The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4).
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- Standards in Genomic Sciences, 2016, v. 11, n. 1, p. 1, doi. 10.1186/s40793-016-0138-x
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High quality permanent draft genome sequence of Phaseolibacter flectens ATCC 12775, a plant pathogen of French bean pods.
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- Standards in Genomic Sciences, 2016, v. 11, n. 1, p. 1, doi. 10.1186/s40793-015-0127-5
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- Article
The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4).
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- Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0077-y
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- Article
IMG 4 version of the integrated microbial genomes comparative analysis system.
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- Nucleic Acids Research, 2014, v. 42, n. D1, p. D560, doi. 10.1093/nar/gkt963
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IMG/M 4 version of the integrated metagenome comparative analysis system.
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- Nucleic Acids Research, 2014, v. 42, n. D1, p. D568, doi. 10.1093/nar/gkt919
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- Article
Plant MicroRNAs Display Differential 3′ Truncation and Tailing Modifications That Are ARGONAUTE1 Dependent and Conserved Across Species.
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- Plant Cell, 2013, v. 25, n. 7, p. 2417, doi. 10.1105/tpc.113.114603
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Global identification of microRNA–target RNA pairs by parallel analysis of RNA ends.
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- Nature Biotechnology, 2008, v. 26, n. 8, p. 941, doi. 10.1038/nbt1417
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An expression atlas of rice mRNAs and small RNAs.
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- Nature Biotechnology, 2007, v. 25, n. 4, p. 473, doi. 10.1038/nbt1291
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- Article