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Genome-scale methylation assessment did not identify prognostic biomarkers in oral tongue carcinomas.
Published in:
Clinical Epigenetics, 2016, v. 8, p. 1, doi. 10.1186/s13148-016-0235-0
By:
- Lim, Annette M.;
- Wong, Nicholas C.;
- Pidsley, Ruth;
- Zotenko, Elena;
- Corry, June;
- Dobrovic, Alexander;
- Clark, Susan J.;
- Rischin, Danny;
- Solomon, Benjamin
Publication type:
Article
Epigenetic Studies of Schizophrenia: Progress, Predicaments, and Promises for the Future.
Published in:
2013
By:
- Dempster, Emma;
- Viana, Joana;
- Pidsley, Ruth;
- Mill, Jonathan
Publication type:
Journal Article
Epigenetic Studies of Schizophrenia: Progress, Predicaments, and Promises for the Future.
Published in:
Schizophrenia Bulletin, 2013, v. 39, n. 1, p. 11, doi. 10.1093/schbul/sbs139
By:
- Dempster, Emma;
- Viana, Joana;
- Pidsley, Ruth;
- Mill, Jonathan
Publication type:
Article
MethPanel: a parallel pipeline and interactive analysis tool for multiplex bisulphite PCR sequencing to assess DNA methylation biomarker panels for disease detection.
Published in:
Bioinformatics, 2021, v. 37, n. 15, p. 2198, doi. 10.1093/bioinformatics/btaa1060
By:
- Luu, Phuc-Loi;
- Ong, Phuc-Thinh;
- Loc, Tran Thai Huu;
- Lam, Dilys;
- Pidsley, Ruth;
- Stirzaker, Clare;
- Clark, Susan J
Publication type:
Article
Identification of DNA methylation biomarkers with potential to predict response to neoadjuvant chemotherapy in triple-negative breast cancer.
Published in:
Clinical Epigenetics, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13148-021-01210-6
By:
- Meyer, Braydon;
- Clifton, Samuel;
- Locke, Warwick;
- Luu, Phuc-Loi;
- Du, Qian;
- Lam, Dilys;
- Armstrong, Nicola J.;
- Kumar, Beena;
- Deng, Niantao;
- Harvey, Kate;
- Swarbrick, Alex;
- Ganju, Vinod;
- Clark, Susan J.;
- Pidsley, Ruth;
- Stirzaker, Clare
Publication type:
Article
Integrated Genetic and Epigenetic Analysis Identifies Haplotype-Specific Methylation in the FTO Type 2 Diabetes and Obesity Susceptibility Locus.
Published in:
PLoS ONE, 2010, v. 5, n. 11, p. 1, doi. 10.1371/journal.pone.0014040
By:
- Bell, Christopher G.;
- Finer, Sarah;
- Lindgren, Cecilia M.;
- Wilson, Gareth A.;
- Rakyan, Vardhman K.;
- Teschendorff, Andrew E.;
- Akan, Pelin;
- Stupka, Elia;
- Down, Thomas A.;
- Prokopenko, Inga;
- Morison, Ian M.;
- Mill, Jonathan;
- Pidsley, Ruth;
- Deloukas, Panos;
- Frayling, Timothy M.;
- Hattersley, Andrew T.;
- McCarthy, Mark I.;
- Beck, Stephan;
- Hitman, Graham A.
Publication type:
Article
Advances in Prognostic Methylation Biomarkers for Prostate Cancer.
Published in:
Cancers, 2020, v. 12, n. 10, p. 2993, doi. 10.3390/cancers12102993
By:
- Lam, Dilys;
- Clark, Susan;
- Stirzaker, Clare;
- Pidsley, Ruth
Publication type:
Article
Comprehensive methylome sequencing reveals prognostic epigenetic biomarkers for prostate cancer mortality.
Published in:
Clinical & Translational Medicine, 2022, v. 12, n. 10, p. 1, doi. 10.1002/ctm2.1030
By:
- Pidsley, Ruth;
- Lam, Dilys;
- Qu, Wenjia;
- Peters, Timothy J.;
- Luu, Phuc‐Loi;
- Korbie, Darren;
- Stirzaker, Clare;
- Daly, Roger J.;
- Stricker, Phillip;
- Kench, James G.;
- Horvath, Lisa G.;
- Clark, Susan J.
Publication type:
Article
De novo identification of differentially methylated regions in the human genome.
Published in:
Epigenetics & Chromatin, 2015, v. 8, n. 1, p. 1, doi. 10.1186/1756-8935-8-6
By:
- Peters, Timothy J.;
- Buckley, Michael J.;
- Statham, Aaron L.;
- Pidsley, Ruth;
- Samaras, Katherine;
- Lord, Reginald V.;
- Clark, Susan J.;
- Molloy, Peter L.
Publication type:
Article
De novo identification of differentially methylated regions in the human genome.
Published in:
Epigenetics & Chromatin, 2015, v. 8, n. 1, p. 1, doi. 10.1186/1756-8935-8-6
By:
- Peters, Timothy J.;
- Buckley, Michael J.;
- Statham, Aaron L.;
- Pidsley, Ruth;
- Samaras, Katherine;
- Lord, Reginald V.;
- Clark, Susan J.;
- Molloy, Peter L.
Publication type:
Article
Schizophrenia is associated with dysregulation of a Cdk5 activator that regulates synaptic protein expression and cognition.
Published in:
Brain: A Journal of Neurology, 2011, v. 134, n. 8, p. 2408, doi. 10.1093/brain/awr155
By:
- Engmann, Olivia;
- Hortobágyi, Tibor;
- Pidsley, Ruth;
- Troakes, Claire;
- Bernstein, Hans-Gert;
- Kreutz, Michael R.;
- Mill, Jonathan;
- Nikolic, Margareta;
- Giese, Karl Peter
Publication type:
Article
Characterisation and reproducibility of the Human Methylation EPIC v2.0 Bead Chip for DNA methylation profling.
Published in:
BMC Genomics, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s12864-024-10027-5
By:
- Peters, Timothy J.;
- Meyer, Braydon;
- Ryan, Lauren;
- Achinger‑Kawecka, Joanna;
- Song, Jenny;
- Campbell, Elyssa M.;
- Wenjia Qu;
- Nair, Shalima;
- Loi‑Luu, Phuc;
- Stricker, Phillip;
- Lim, Elgene;
- Stirzaker, Clare;
- Clark, Susan J.;
- Pidsley, Ruth
Publication type:
Article
DNA methylation of oestrogen-regulated enhancers defines endocrine sensitivity in breast cancer.
Published in:
Nature Communications, 2015, v. 6, n. 7, p. 7758, doi. 10.1038/ncomms8758
By:
- Stone, Andrew;
- Zotenko, Elena;
- Locke, Warwick J.;
- Korbie, Darren;
- Millar, Ewan K. A.;
- Pidsley, Ruth;
- Stirzaker, Clare;
- Graham, Peter;
- Trau, Matt;
- Musgrove, Elizabeth A.;
- Nicholson, Robert I.;
- Gee, Julia M. W.;
- Clark, Susan J.
Publication type:
Article
Methylomic profiling of human brain tissue supports a neurodevelopmental origin for schizophrenia.
Published in:
Genome Biology, 2014, v. 15, n. 10, p. 1, doi. 10.1186/s13059-014-0483-2
By:
- Pidsley, Ruth;
- Viana, Joana;
- Hannon, Eilis;
- Spiers, Helen H.;
- Troakes, Claire;
- Al-Saraj, Safa;
- Mechawar, Naguib;
- Turecki, Gustavo;
- Schalkwyk, Leonard C.;
- Bray, Nicholas J.;
- Mill, Jonathan
Publication type:
Article
Functional annotation of the human brain methylome identifies tissue-specific epigenetic variation across brain and blood.
Published in:
Genome Biology, 2012, v. 13, n. 6, p. 1, doi. 10.1186/gb-2012-13-6-r43
By:
- Davies, Matthew N.;
- Volta, Manuela;
- Pidsley, Ruth;
- Lunnon, Katie;
- Dixit, Abhishek;
- Lovestone, Simon;
- Coarfa, Cristian;
- Alan Harris, R.;
- Milosavljevic, Aleksandar;
- Troakes, Claire;
- Al-Sarraj, Safa;
- Dobson, Richard;
- Schalkwyk, Leonard C.;
- Mill, Jonathan
Publication type:
Article
Schizophrenia-associated methylomic variation: molecular signatures of disease and polygenic risk burden across multiple brain regions.
Published in:
Human Molecular Genetics, 2017, v. 26, n. 1, p. 210, doi. 10.1093/hmg/ddw373
By:
- Viana, Joana;
- Hannon, Eilis;
- Dempster, Emma;
- Pidsley, Ruth;
- Macdonald, Ruby;
- Knox, Olivia;
- Spiers, Helen;
- Troakes, Claire;
- Al-Saraj, Safa;
- Turecki, Gustavo;
- Schalkwyk, Leonard C.;
- Mill, Jonathan
Publication type:
Article
Disease-associated epigenetic changes in monozygotic twins discordant for schizophrenia and bipolar disorder.
Published in:
Human Molecular Genetics, 2011, v. 20, n. 24, p. 4786, doi. 10.1093/hmg/ddr416
By:
- Dempster, Emma L.;
- Pidsley, Ruth;
- Schalkwyk, Leonard C.;
- Owens, Sheena;
- Georgiades, Anna;
- Kane, Fergus;
- Kalidindi, Sridevi;
- Picchioni, Marco;
- Kravariti, Eugenia;
- Toulopoulou, Timothea;
- Murray, Robin M.;
- Mill, Jonathan
Publication type:
Article
Comprehensive evaluation of targeted multiplex bisulphite PCR sequencing for validation of DNA methylation biomarker panels.
Published in:
Clinical Epigenetics, 2020, v. 12, n. 1, p. 1, doi. 10.1186/s13148-020-00880-y
By:
- Lam, Dilys;
- Luu, Phuc-Loi;
- Song, Jenny Z.;
- Qu, Wenjia;
- Risbridger, Gail P.;
- Lawrence, Mitchell G.;
- Lu, Jennifer;
- Trau, Matt;
- Korbie, Darren;
- Clark, Susan J.;
- Pidsley, Ruth;
- Stirzaker, Clare
Publication type:
Article
Alterations in the methylome of the stromal tumour microenvironment signal the presence and severity of prostate cancer.
Published in:
Clinical Epigenetics, 2020, v. 12, n. 1, p. 1, doi. 10.1186/s13148-020-00836-2
By:
- Lawrence, Mitchell G.;
- Pidsley, Ruth;
- Niranjan, Birunthi;
- Papargiris, Melissa;
- Pereira, Brooke A.;
- Richards, Michelle;
- Teng, Linda;
- Norden, Sam;
- Ryan, Andrew;
- Frydenberg, Mark;
- Stirzaker, Clare;
- Taylor, Renea A.;
- Risbridger, Gail P.;
- Clark, Susan J.
Publication type:
Article
The Role of Tuba1a in Adult Hippocampal Neurogenesis and the Formation of the Dentate Gyrus.
Published in:
Developmental Neuroscience, 2010, v. 32, n. 4, p. 268, doi. 10.1159/000319663
By:
- Keays, David A.;
- Cleak, James;
- Huang, Guo-Jen;
- Edwards, Andrew;
- Braun, Andreas;
- Treiber, Christoph D.;
- Pidsley, Ruth;
- Flint, Jonathan
Publication type:
Article
DNA methylation at the Igf2/H19 imprinting control region is associated with cerebellum mass in outbred mice.
Published in:
Molecular Brain, 2012, v. 5, n. 1, p. 42, doi. 10.1186/1756-6606-5-42
By:
- Pidsley, Ruth;
- Fernandes, Cathy;
- Viana, Joana;
- Paya-Cano, Jose L.;
- Lin Liu;
- Smith, Rebecca G.;
- Schalkwyk, Leonard C.;
- Mill, Jonathan
Publication type:
Article
Critical evaluation of the Illumina MethylationEPIC BeadChip microarray for whole-genome DNA methylation profiling.
Published in:
Genome Biology, 2016, v. 17, p. 1, doi. 10.1186/s13059-016-1066-1
By:
- Pidsley, Ruth;
- Zotenko, Elena;
- Peters, Timothy J.;
- Lawrence, Mitchell G.;
- Risbridger, Gail P.;
- Molloy, Peter;
- Van Djik, Susan;
- Muhlhausler, Beverly;
- Stirzaker, Clare;
- Clark, Susan J.
Publication type:
Article
Mutation of the Diamond-Blackfan Anemia Gene Rps7 in Mouse Results in Morphological and Neuroanatomical Phenotypes.
Published in:
PLoS Genetics, 2013, v. 9, n. 1, p. 1, doi. 10.1371/journal.pgen.1003094
By:
- Watkins-Chow, Dawn E.;
- Cooke, Joanna;
- Pidsley, Ruth;
- Edwards, Andrew;
- Slotkin, Rebecca;
- Leeds, Karen E.;
- Mullen, Raymond;
- Baxter, Laura L.;
- Campbell, Thomas G.;
- Salzer, Marion C.;
- Biondini, Laura;
- Gibney, Gretchen;
- Dinh Tuy, Françoise Phan;
- Chelly, Jamel;
- Morris, H. Douglas;
- Riegler, Johannes;
- Lythgoe, Mark F.;
- Arkell, Ruth M.;
- Loreni, Fabrizio;
- Flint, Jonathan
Publication type:
Article
Epigenome-Wide Scans Identify Differentially Methylated Regions for Age and Age-Related Phenotypes in a Healthy Ageing Population.
Published in:
PLoS Genetics, 2012, v. 8, n. 4, p. 1, doi. 10.1371/journal.pgen.1002629
By:
- Bell, Jordana T.;
- Pei-Chien Tsai;
- Tsun-Po Yang;
- Pidsley, Ruth;
- Nisbet, James;
- Glass, Daniel;
- Mangino, Massimo;
- Guangju Zhai;
- Feng Zhang;
- Valdes, Ana;
- So-Youn Shin;
- Dempster, Emma L.;
- Murray, Robin M.;
- Grundberg, Elin;
- Hedman, Asa K.;
- Nica, Alexandra;
- Small, Kerrin S.;
- Dermitzakis, Emmanouil T.;
- McCarthy, Mark I.;
- Mill, Jonathan
Publication type:
Article
A data-driven approach to preprocessing Illumina 450K methylation array data.
Published in:
BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/10.1186/1471-2164-14-293
By:
- Volta, Manuela;
- Schalkwyk, Leonard C.;
- Pidsley, Ruth;
- Mill, Jonathan;
- Lunnon, Katie;
- Chloe C. Y. Wong
Publication type:
Article
Evaluation of cross-platform and interlaboratory concordance via consensus modelling of genomic measurements.
Published in:
Bioinformatics, 2019, v. 35, n. 4, p. 560, doi. 10.1093/bioinformatics/bty675
By:
- Peters, Timothy J;
- Pidsley, Ruth;
- Nair, Shalima;
- Qu, Wenjia;
- Song, Jenny;
- Giles, Katherine A;
- Statham, Aaron L;
- French, Hugh J;
- Bradford, Stephen T;
- Stirzaker, Clare;
- Clark, Susan J;
- Varinli, Hilal;
- Speirs, Helen;
- Speed, Terence P
Publication type:
Article

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