Works by Peter M. Kasson

Results: 20

Refinement of Highly Flexible Protein Structures using Simulation‐Guided Spectroscopy.

Published in:

Angewandte Chemie, 2018, v. 130, n. 52, p. 17356, doi. 10.1002/ange.201810462

By:

Hays, Jennifer M.;
Kieber, Marissa K.;
Li, Jason Z.;
Han, Ji In;
Columbus, Linda;
Kasson, Peter M.

Publication type:

Article

Managing Coronavirus Disease 2019 Spread With Voluntary Public Health Measures: Sweden as a Case Study for Pandemic Control.

Published in:

Clinical Infectious Diseases, 2020, v. 71, n. 12, p. 3174, doi. 10.1093/cid/ciaa864

By:

Kamerlin, Shina C L;
Kasson, Peter M

Publication type:

Article

Structural prediction of chimeric immunogen candidates to elicit targeted antibodies against betacoronaviruses.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 2, p. 1, doi. 10.1371/journal.pcbi.1012812

By:

Simpson, Jamel;
Kasson, Peter M.

Publication type:

Article

Persistent voids: a new structural metric for membrane fusion.

Published in:

Bioinformatics, 2007, v. 23, n. 14, p. 1753, doi. 10.1093/bioinformatics/btm250

By:

Peter M. Kasson;
Afra Zomorodian;
Sanghyun Park;
Nina Singhal;
Leonidas J. Guibas;
Vijay S. Pande

Publication type:

Article

A hybrid machine-learning approach for segmentation of protein localization data.

Published in:

Bioinformatics, 2005, v. 21, n. 19, p. 3778, doi. 10.1093/bioinformatics/bti615

By:

Peter M. Kasson;
Johannes B. Huppa;
Mark M. Davis;
Axel T. Brunger

Publication type:

Article

gmxapi: A GROMACS-native Python interface for molecular dynamics with ensemble and plugin support.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 2, p. 1, doi. 10.1371/journal.pcbi.1009835

By:

Irrgang, M. Eric;
Davis, Caroline;
Kasson, Peter M.

Publication type:

Article

Development of COVID-19 vaccine using a dual Toll-like receptor ligand liposome adjuvant.

Published in:

NPJ Vaccines, 2021, v. 6, n. 1, p. 1, doi. 10.1038/s41541-021-00399-0

By:

Abhyankar, Mayuresh M.;
Mann, Barbara J.;
Sturek, Jeffrey M.;
Brovero, Savannah;
Moreau, G. Brett;
Sengar, Anjali;
Richardson, Crystal M.;
Agah, Sayeh;
Pomés, Anna;
Kasson, Peter M.;
Tomai, Mark A.;
Fox, Christopher B.;
Petri Jr, William A.

Publication type:

Article

Refinement of Highly Flexible Protein Structures using Simulation‐Guided Spectroscopy.

Published in:

Angewandte Chemie International Edition, 2018, v. 57, n. 52, p. 17110, doi. 10.1002/anie.201810462

By:

Hays, Jennifer M.;
Kieber, Marissa K.;
Li, Jason Z.;
Han, Ji In;
Columbus, Linda;
Kasson, Peter M.

Publication type:

Article

Key interaction networks: Identifying evolutionarily conserved non‐covalent interaction networks across protein families.

Published in:

Protein Science: A Publication of the Protein Society, 2024, v. 33, n. 3, p. 1, doi. 10.1002/pro.4911

By:

Yehorova, Dariia;
Crean, Rory M.;
Kasson, Peter M.;
Kamerlin, Shina C. L.

Publication type:

Article

Control of Membrane Fusion Mechanism by Lipid Composition: Predictions from Ensemble Molecular Dynamics.

Published in:

PLoS Computational Biology, 2007, v. 3, n. 11, p. e220, doi. 10.1371/journal.pcbi.0030220

By:

Kasson, Peter M.;
Pande, Vijay S.

Publication type:

Article

gmxapi: a high-level interface for advanced control and extension of molecular dynamics simulations.

Published in:

Bioinformatics, 2018, v. 34, n. 22, p. 3945, doi. 10.1093/bioinformatics/bty484

By:

Irrgang, M Eric;
Hays, Jennifer M;
Kasson, Peter M

Publication type:

Article

Excess positional mutual information predicts both local and allosteric mutations affecting beta lactamase drug resistance.

Published in:

Bioinformatics, 2016, v. 32, n. 22, p. 3420, doi. 10.1093/bioinformatics/btw492

By:

Cortina, George A.;
Kasson, Peter M.

Publication type:

Article

GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit.

Published in:

Bioinformatics, 2013, v. 29, n. 7, p. 845, doi. 10.1093/bioinformatics/btt055

By:

Pronk, Sander;
Páll, Szilárd;
Schulz, Roland;
Larsson, Per;
Bjelkmar, Pär;
Apostolov, Rossen;
Shirts, Michael R.;
Smith, Jeremy C.;
Kasson, Peter M.;
van der Spoel, David;
Hess, Berk;
Lindahl, Erik

Publication type:

Article

Lipid converter, a framework for lipid manipulations in molecular dynamics simulations.

Published in:

2014

By:

Larsson, Per;
Kasson, Peter M

Publication type:

journal article

Dynamic heterogeneity controls diffusion and viscosity near biological interfaces.

Published in:

Nature Communications, 2014, v. 5, n. 1, p. 3034, doi. 10.1038/ncomms4034

By:

Pronk, Sander;
Lindahl, Erik;
Kasson, Peter M.

Publication type:

Article

Lipid Tail Protrusion in Simulations Predicts Fusogenic Activity of Influenza Fusion Peptide Mutants and Conformational Models.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 3, p. 1, doi. 10.1371/journal.pcbi.1002950

By:

Larsson, Per;
Kasson, Peter M.

Publication type:

Article

Atomic-Resolution Simulations Predict a Transition State for Vesicle Fusion Defined by Contact of a Few Lipid Tails.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 6, p. 1, doi. 10.1371/journal.pcbi.1000829

By:

Kasson, Peter M.;
Lindahl, Erik;
Pande, Vijay S.

Publication type:

Article

Viral factors in influenza pandemic risk assessment.

Published in:

eLife, 2016, p. 1, doi. 10.7554/eLife.18491

By:

LIPSITCH, MARC;
BARCLAY, WENDY;
RAMAN, RAHUL;
RUSSELL, CHARLES J.;
BELSER, JESSICA A.;
COBEY, SARAH;
KASSON, PETER M.;
LLOYD-SMITH, JAMES O.;
MAURER-STROH, SEBASTIAN.;
RILEY, STEVEN;
BEAUCHEMIN, CATHERINE A. A.;
BEDFORD, TREVOR;
FRIEDRICH, THOMAS C.;
HANDEL, ANDREAS;
HERFST, SANDER;
MURCIA, PABLO R.;
ROCHE, BENJAMIN;
WILKE, CLAUS O.;
RUSSELL, COLIN A.

Publication type:

Article

Influenza viral membrane fusion is sensitive to sterol concentration but surprisingly robust to sterol chemical identity.

Published in:

Scientific Reports, 2016, p. 29842, doi. 10.1038/srep29842

By:

Zawada, Katarzyna E.;
Wrona, Dominik;
Rawle, Robert J.;
Kasson, Peter M.

Publication type:

Article

Computational methods to study enveloped viral entry.

Published in:

Biochemical Society Transactions, 2021, v. 49, n. 6, p. 2527, doi. 10.1042/BST20210190

By:

Tuerkova, Alzbeta;
Kasson, Peter M.

Publication type:

Article