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MODELLING VIRAL AND IMMUNE SYSTEM DYNAMICS.
- Published in:
- Nature Reviews Immunology, 2002, v. 2, n. 1, p. 28, doi. 10.1038/nri700
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- Article
Modeling and Estimation of Kinetic Parameters and Replicative Fitness of HIV-1 from Flow-Cytometry-Based Growth Competition Experiments.
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- Bulletin of Mathematical Biology, 2008, v. 70, n. 6, p. 1749, doi. 10.1007/s11538-008-9323-4
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- Article
Parameter Identifiability and Estimation of HIV/AIDS Dynamic Models.
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- Bulletin of Mathematical Biology, 2008, v. 70, n. 3, p. 785, doi. 10.1007/s11538-007-9279-9
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- Article
Modeling T Cell Proliferation and Death in Vitro Based on Labeling Data: Generalizations of the Smith-Martin Cell Cycle Model.
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- Bulletin of Mathematical Biology, 2008, v. 70, n. 1, p. 21, doi. 10.1007/s11538-007-9239-4
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- Article
Estimating Lymphocyte Division and Death Rates from CFSE Data.
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- Bulletin of Mathematical Biology, 2006, v. 68, n. 5, p. 1011, doi. 10.1007/s11538-006-9094-8
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- Article
Opportunistic infection as a cause of transient viremia in chronically infected HIV patients under treatment with HAART
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- Bulletin of Mathematical Biology, 2005, v. 67, n. 6, p. 1227, doi. 10.1016/j.bulm.2005.01.006
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- Article
Duration of an intermittent episode of viremia
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- Bulletin of Mathematical Biology, 2005, v. 67, n. 4, p. 885, doi. 10.1016/j.bulm.2004.11.003
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- Article
Optimal viral production
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- Bulletin of Mathematical Biology, 2003, v. 65, n. 6, p. 1003, doi. 10.1016/S0092-8240(03)00056-9
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- Article
The Distribution of Viral Blips Observed in HIV-1 Infected Patients Treated with Combination Antiretroviral Therapy
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- Bulletin of Mathematical Biology, 2003, v. 65, n. 2, p. 263, doi. 10.1016/S0092-8240(02)00095-2
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- Article
Modeling Deuterated Glucose Labeling of T-lymphocytes
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- Bulletin of Mathematical Biology, 2002, v. 64, n. 2, p. 385, doi. 10.1006/bulm.2001.0282
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- Article
HIV-1 Infection and Low Steady State Viral Loads
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- Bulletin of Mathematical Biology, 2002, v. 64, n. 1, p. 29, doi. 10.1006/bulm.2001.0266
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- Article
CD8<sup>+</sup> T cells control SIV infection using both cytolytic effects and non-cytolytic suppression of virus production.
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- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-42435-8
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- Article
Publisher Correction: Antiviral and clinical activity of bamlanivimab in a randomized trial of non-hospitalized adults with COVID-19.
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- 2023
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- Correction Notice
Prevalence of end of treatment RNA-positive/sustained viral response in HCV patients treated with sofosbuvir combination therapies.
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- Therapeutic Advances in Gastroenterology, 2017, v. 10, n. 1, p. 68, doi. 10.1177/1756283X16672392
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- Article
Immunological Correlates of the HIV-1 Replication-Competent Reservoir Size.
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- Clinical Infectious Diseases, 2021, v. 73, n. 8, p. 1528, doi. 10.1093/cid/ciab587
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- Article
Variant-Specific Viral Kinetics in Acute COVID-19.
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- Journal of Infectious Diseases, 2023, v. 288, p. S136, doi. 10.1093/infdis/jiad314
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- Article
Treatment with integrase inhibitor suggests a new interpretation of HIV RNA decay curves that reveals a subset of cells with slow integration.
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- PLoS Pathogens, 2017, v. 13, n. 7, p. 1, doi. 10.1371/journal.ppat.1006478
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- Article
NS5A inhibitors unmask differences in functional replicase complex half-life between different hepatitis C virus strains.
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- PLoS Pathogens, 2017, v. 13, n. 6, p. 1, doi. 10.1371/journal.ppat.1006343
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- Article
Multiscale modeling of HBV infection integrating intra- and intercellular viral propagation to analyze extracellular viral markers.
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- PLoS Computational Biology, 2024, v. 20, n. 3, p. 1, doi. 10.1371/journal.pcbi.1011238
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- Article
Mathematical modeling of plus-strand RNA virus replication to identify broad-spectrum antiviral treatment strategies.
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- PLoS Computational Biology, 2023, v. 19, n. 4, p. 1, doi. 10.1371/journal.pcbi.1010423
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- Article
The complexity of complexes in signal transduction.
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- Biotechnology & Bioengineering, 2003, v. 84, n. 7, p. 783, doi. 10.1002/bit.10842
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- Article
Modelling how ribavirin improves interferon response rates in hepatitis C virus infection.
- Published in:
- Nature, 2004, v. 432, n. 7019, p. 922, doi. 10.1038/nature03153
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- Article
Modeling the Effects of Morphine-Altered Virus Specific Antibody Responses on HIV/SIV Dynamics.
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- Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-41751-8
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- Article
A direct-acting antiviral drug abrogates viremia in Zika virus–infected rhesus macaques.
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- Science Translational Medicine, 2020, v. 12, n. 547, p. 1, doi. 10.1126/scitranslmed.aau9135
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- Article
Proof-of-Principle for Immune Control of Global HIV-1 Reactivation In Vivo.
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- Clinical Infectious Diseases, 2015, v. 61, n. 1, p. 120, doi. 10.1093/cid/civ219
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- Article
Estimating time since infection in early homogeneous HIV-1 samples using a poisson model.
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- BMC Bioinformatics, 2010, v. 11, p. 532, doi. 10.1186/1471-2105-11-532
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- Article
Modeling the Effects of Vorinostat In Vivo Reveals both Transient and Delayed HIV Transcriptional Activation and Minimal Killing of Latently Infected Cells.
- Published in:
- PLoS Pathogens, 2015, v. 11, n. 10, p. 1, doi. 10.1371/journal.ppat.1005237
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- Article
Transmitted Virus Fitness and Host T Cell Responses Collectively Define Divergent Infection Outcomes in Two HIV-1 Recipients.
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- PLoS Pathogens, 2015, v. 11, n. 1, p. 1, doi. 10.1371/journal.ppat.1004565
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- Article
Kinetics of Coinfection with Influenza A Virus and Streptococcus pneumoniae.
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- PLoS Pathogens, 2013, v. 9, n. 3, p. 1, doi. 10.1371/journal.ppat.1003238
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- Article
Elucidation of Hepatitis C Virus Transmission and Early Diversification by Single Genome Sequencing.
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- PLoS Pathogens, 2012, v. 8, n. 8, p. 1, doi. 10.1371/journal.ppat.1002880
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- Article
Quantifying the Diversification of Hepatitis C Virus (HCV) during Primary Infection: Estimates of the In Vivo Mutation Rate.
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- PLoS Pathogens, 2012, v. 8, n. 8, p. 1, doi. 10.1371/journal.ppat.1002881
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- Article
Early Low-Titer Neutralizing Antibodies Impede HIV-1 Replication and Select for Virus Escape.
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- PLoS Pathogens, 2012, v. 8, n. 5, p. 1, doi. 10.1371/journal.ppat.1002721
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- Article
Antithetic effect of interferon-α on cell-free and cell-to-cell HIV-1 infection.
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- PLoS Computational Biology, 2022, v. 18, n. 4, p. 1, doi. 10.1371/journal.pcbi.1010053
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- Article
Nonlatching positive feedback enables robust bimodality by decoupling expression noise from the mean.
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- PLoS Biology, 2017, v. 15, n. 10, p. 1, doi. 10.1371/journal.pbio.2000841
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- Article
Viral Load Kinetics of Severe Acute Respiratory Syndrome Coronavirus 2 in Hospitalized Individuals With Coronavirus Disease 2019.
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- Open Forum Infectious Diseases, 2021, v. 8, n. 8, p. 1, doi. 10.1093/ofid/ofab153
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- Article
Modeling hepatitis C virus kinetics during liver transplantation reveals the role of the liver in virus clearance.
- Published in:
- eLife, 2021, p. 1, doi. 10.7554/eLife.65297
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- Article
Preexisting compensatory amino acids compromise fitness costs of a HIV-1 T cell escape mutation.
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- Retrovirology, 2014, v. 11, n. 1, p. 101, doi. 10.1186/s12977-014-0101-0
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- Article
Impact of immune escape mutations on HIV-1 fitness in the context of the cognate transmitted/ founder genome.
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- Retrovirology, 2012, v. 9, n. 1, p. 89, doi. 10.1186/1742-4690-9-89
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- Article
How robust are estimates of key parameters in standard viral dynamic models?
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- PLoS Computational Biology, 2024, v. 20, n. 4, p. 1, doi. 10.1371/journal.pcbi.1011437
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- Article
Modeling resistance to the broadly neutralizing antibody PGT121 in people living with HIV-1.
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- PLoS Computational Biology, 2024, v. 20, n. 3, p. 1, doi. 10.1371/journal.pcbi.1011518
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- Article
Modeling the Effects of Morphine on Simian Immunodeficiency Virus Dynamics.
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- PLoS Computational Biology, 2016, v. 12, n. 9, p. 1, doi. 10.1371/journal.pcbi.1005127
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- Article
Residual Viremia in Treated HIV<sup>+</sup> Individuals.
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- PLoS Computational Biology, 2016, v. 12, n. 1, p. 1, doi. 10.1371/journal.pcbi.1004677
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- Article
Recombination Enhances HIV-1 Envelope Diversity by Facilitating the Survival of Latent Genomic Fragments in the Plasma Virus Population.
- Published in:
- PLoS Computational Biology, 2015, v. 11, n. 12, p. 1, doi. 10.1371/journal.pcbi.1004625
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- Article
A quantitative model used to compare within-host SARS-CoV-2, MERS-CoV, and SARS-CoV dynamics provides insights into the pathogenesis and treatment of SARS-CoV-2.
- Published in:
- PLoS Biology, 2021, v. 19, n. 3, p. 1, doi. 10.1371/journal.pbio.3001128
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- Article
HIV influences clustering and intracellular replication of hepatitis C virus.
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- Journal of Viral Hepatitis, 2021, v. 28, n. 2, p. 334, doi. 10.1111/jvh.13429
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- Article
Disentangling the lifespans of hepatitis C virus‐infected cells and intracellular vRNA replication‐complexes during direct‐acting anti‐viral therapy.
- Published in:
- Journal of Viral Hepatitis, 2020, v. 27, n. 3, p. 261, doi. 10.1111/jvh.13229
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- Article
Inferring Viral Dynamics in Chronically HCV Infected Patients from the Spatial Distribution of Infected Hepatocytes.
- Published in:
- PLoS Computational Biology, 2014, v. 10, n. 11, p. 1, doi. 10.1371/journal.pcbi.1003934
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- Article
Quantifying the Turnover of Transcriptional Subclasses of HIV-1-Infected Cells.
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- PLoS Computational Biology, 2014, v. 10, n. 10, p. 1, doi. 10.1371/journal.pcbi.1003871
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- Article
A Hepatitis C Virus Infection Model with Time-Varying Drug Effectiveness: Solution and Analysis.
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- PLoS Computational Biology, 2014, v. 10, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003769
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- Article
Antibody Responses during Hepatitis B Viral Infection.
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- PLoS Computational Biology, 2014, v. 10, n. 7, p. 1, doi. 10.1371/journal.pcbi.1003730
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- Article